Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_021539.2 Length=38275 Score E Sequences producing significant alignments: (Bits) Value seq158858 104 6e-18 seq1367 104 6e-18 seq121411 96.9 8e-16 >seq158858 Length=235449 Score = 104 bits (114), Expect = 6e-18 Identities = 173/247 (70%), Gaps = 5/247 (2%) Strand=Plus/Plus Query 16500 ATGAAGGCaaaaaaaaTCACTGTACACAATACGTACAATGATGCTACAGCACAAAATGAG 16559 ||||| ||| | | || || || || || || || |||||||| | || | || ||| Sbjct 160045 ATGAAAGCAGAGTACATTACAGTGCATAACACTTATAATGATGCGCCTGCTAAGAACGAG 160104 Query 16560 ACGGATTAC-TGTAAGAACAACAATAATGAAGTTAGTTTCCATGTCGCAGTAGATGATAA 16618 ||||| || | | || | ||| || ||| ||||| ||||||||||||||| Sbjct 160105 GTAAATTACATGATCGGA-AATACTAACGAGGTTTCATTCCACTTCGCAGTAGATGATAT 160163 Query 16619 AGAAGCTATTCAAGTCGTTCCTTTTAATAGAAATGCGTGGCACTGTGGCGATGGTGGAAA 16678 |||| |||||||| |||| || || | ||||| ||||| ||||| |||||||| Sbjct 160164 CGAAGTTATTCAAGGTATTCCGGTTGATCGTAATGCTTGGCATTGTGGTGATGGTGG--- 160220 Query 16679 TGGATATGGAAACAGGAATACCGTCGGTGTAGAAATCTGTTACAGCAAATCTGGAGGCTC 16738 ||| | |||||| | || | ||||||| |||||||||||| |||||| || | Sbjct 160221 TGGTAACGGAAACCGAAAATCTATCGGTGTTGAAATCTGTTACTCATTATCTGGTGGTCC 160280 Query 16739 CAGATAT 16745 |||||| Sbjct 160281 AAGATAT 160287 >seq1367 Length=293 Score = 104 bits (114), Expect = 6e-18 Identities = 195/283 (69%), Gaps = 4/283 (1%) Strand=Plus/Minus Query 34595 GAATTTGAATTCACGCCAGAATTCAAAATCTGGATGGCAACCAACCACAAACCAATTATT 34654 || || ||||||| |||||||||||| | ||| || |||| |||||||| ||||||||| Sbjct 282 GAGTTCGAATTCAAACCAGAATTCAAACTTTGGCTGTCAACTAACCACAAGCCAATTATT 223 Query 34655 CGAGGGAGAGATGATGGAATTTGGCGTCGATTACATTTAGTACCTTTCACAGTAAAAATT 34714 |||| | ||||||||| || ||||| |||| | | || || || || | Sbjct 222 AGAGGAACAGATGATGGTATCTGGCGGAGATTGATGCTGATTCCATTTACTCATCAAGTA 163 Query 34715 CCTGACGAAAAAGTAGATAAACAGCTAAAATATAAACTCCGCAGTGAATTAACTGGGATA 34774 || | || | ||||| ||| || | ||| |||||| |||||| || || || Sbjct 162 CCAGTGGATCAGGTAGACAAAAGACTCACATACAAACTCGAACGTGAATCAATCGGAATC 103 Query 34775 TTGAACTGGGCTGTAGAAGGCTTCCTTAAATGGCAAAAGGAAGGCTTGGGGATGCCGAAA 34834 | || ||||| || || || ||||||||||| ||||| || | | |||| | Sbjct 102 CTAAATTGGGCCGTTGATGGAGCACTTAAATGGCAGCGTGAAGGATTAGAGCCGCCGCA- 44 Query 34835 GCAGT-TGAAA-ATGCTAGCTCTGAATATAAATCAGAAATGGA 34875 ||| ||||| |||| ||| ||| ||| | |||||||||| Sbjct 43 -GAGTGTGAAAGATGCAAGCAATGAGTATCGAACAGAAATGGA 2 >seq121411 Length=390 Score = 96.9 bits (106), Expect = 8e-16 Identities = 137/191 (72%), Gaps = 9/191 (5%) Strand=Plus/Plus Query 31815 GAAGGATTCGATGTTCCAGACTGTTCTACTGTGATTATGCTAAGACCAACTCAATCTCTA 31874 ||||| || |||||||| || ||| ||| || ||||| || |||||| ||||| Sbjct 11 GAAGGCTTTGATGTTCCCGAATGTGGCGTTGTCATCATGCTGAGGCCAACTGCTTCTCTT 70 Query 31875 TCCCTGTATATTCAGCAATCAATGCGAGGTATGCGATA----CCGAACTGGTAAAACAGC 31930 ||| | ||||||||||| |||||||| ||||| || |||||| |||| ||| Sbjct 71 GTCCTTGACATTCAGCAATCGATGCGAGGAATGCGCTATAGGCCGAAC----AAAAGAGC 126 Query 31931 TATTATTATTGACCACGTTGGAAATGTCAATCGCTTTGGTTTGCCAGACATGGAACGAAA 31990 || |||||||| || |||| || || ||||||||||| | || || || || | Sbjct 127 AATCATTATTGATCATGTTGCGAACGTTTATCGCTTTGGTCTTCCTGATGCTGACCGTGA 186 Query 31991 ATGGTC-CTTA 32000 |||||| |||| Sbjct 187 ATGGTCGCTTA 197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 121970116112632