Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_021539.2
Length=38275
Score E
Sequences producing significant alignments: (Bits) Value
seq158858 104 6e-18
seq1367 104 6e-18
seq121411 96.9 8e-16
>seq158858
Length=235449
Score = 104 bits (114), Expect = 6e-18
Identities = 173/247 (70%), Gaps = 5/247 (2%)
Strand=Plus/Plus
Query 16500 ATGAAGGCaaaaaaaaTCACTGTACACAATACGTACAATGATGCTACAGCACAAAATGAG 16559
||||| ||| | | || || || || || || || |||||||| | || | || |||
Sbjct 160045 ATGAAAGCAGAGTACATTACAGTGCATAACACTTATAATGATGCGCCTGCTAAGAACGAG 160104
Query 16560 ACGGATTAC-TGTAAGAACAACAATAATGAAGTTAGTTTCCATGTCGCAGTAGATGATAA 16618
||||| || | | || | ||| || ||| ||||| |||||||||||||||
Sbjct 160105 GTAAATTACATGATCGGA-AATACTAACGAGGTTTCATTCCACTTCGCAGTAGATGATAT 160163
Query 16619 AGAAGCTATTCAAGTCGTTCCTTTTAATAGAAATGCGTGGCACTGTGGCGATGGTGGAAA 16678
|||| |||||||| |||| || || | ||||| ||||| ||||| ||||||||
Sbjct 160164 CGAAGTTATTCAAGGTATTCCGGTTGATCGTAATGCTTGGCATTGTGGTGATGGTGG--- 160220
Query 16679 TGGATATGGAAACAGGAATACCGTCGGTGTAGAAATCTGTTACAGCAAATCTGGAGGCTC 16738
||| | |||||| | || | ||||||| |||||||||||| |||||| || |
Sbjct 160221 TGGTAACGGAAACCGAAAATCTATCGGTGTTGAAATCTGTTACTCATTATCTGGTGGTCC 160280
Query 16739 CAGATAT 16745
||||||
Sbjct 160281 AAGATAT 160287
>seq1367
Length=293
Score = 104 bits (114), Expect = 6e-18
Identities = 195/283 (69%), Gaps = 4/283 (1%)
Strand=Plus/Minus
Query 34595 GAATTTGAATTCACGCCAGAATTCAAAATCTGGATGGCAACCAACCACAAACCAATTATT 34654
|| || ||||||| |||||||||||| | ||| || |||| |||||||| |||||||||
Sbjct 282 GAGTTCGAATTCAAACCAGAATTCAAACTTTGGCTGTCAACTAACCACAAGCCAATTATT 223
Query 34655 CGAGGGAGAGATGATGGAATTTGGCGTCGATTACATTTAGTACCTTTCACAGTAAAAATT 34714
|||| | ||||||||| || ||||| |||| | | || || || || |
Sbjct 222 AGAGGAACAGATGATGGTATCTGGCGGAGATTGATGCTGATTCCATTTACTCATCAAGTA 163
Query 34715 CCTGACGAAAAAGTAGATAAACAGCTAAAATATAAACTCCGCAGTGAATTAACTGGGATA 34774
|| | || | ||||| ||| || | ||| |||||| |||||| || || ||
Sbjct 162 CCAGTGGATCAGGTAGACAAAAGACTCACATACAAACTCGAACGTGAATCAATCGGAATC 103
Query 34775 TTGAACTGGGCTGTAGAAGGCTTCCTTAAATGGCAAAAGGAAGGCTTGGGGATGCCGAAA 34834
| || ||||| || || || ||||||||||| ||||| || | | |||| |
Sbjct 102 CTAAATTGGGCCGTTGATGGAGCACTTAAATGGCAGCGTGAAGGATTAGAGCCGCCGCA- 44
Query 34835 GCAGT-TGAAA-ATGCTAGCTCTGAATATAAATCAGAAATGGA 34875
||| ||||| |||| ||| ||| ||| | ||||||||||
Sbjct 43 -GAGTGTGAAAGATGCAAGCAATGAGTATCGAACAGAAATGGA 2
>seq121411
Length=390
Score = 96.9 bits (106), Expect = 8e-16
Identities = 137/191 (72%), Gaps = 9/191 (5%)
Strand=Plus/Plus
Query 31815 GAAGGATTCGATGTTCCAGACTGTTCTACTGTGATTATGCTAAGACCAACTCAATCTCTA 31874
||||| || |||||||| || ||| ||| || ||||| || |||||| |||||
Sbjct 11 GAAGGCTTTGATGTTCCCGAATGTGGCGTTGTCATCATGCTGAGGCCAACTGCTTCTCTT 70
Query 31875 TCCCTGTATATTCAGCAATCAATGCGAGGTATGCGATA----CCGAACTGGTAAAACAGC 31930
||| | ||||||||||| |||||||| ||||| || |||||| |||| |||
Sbjct 71 GTCCTTGACATTCAGCAATCGATGCGAGGAATGCGCTATAGGCCGAAC----AAAAGAGC 126
Query 31931 TATTATTATTGACCACGTTGGAAATGTCAATCGCTTTGGTTTGCCAGACATGGAACGAAA 31990
|| |||||||| || |||| || || ||||||||||| | || || || || |
Sbjct 127 AATCATTATTGATCATGTTGCGAACGTTTATCGCTTTGGTCTTCCTGATGCTGACCGTGA 186
Query 31991 ATGGTC-CTTA 32000
|||||| ||||
Sbjct 187 ATGGTCGCTTA 197
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 121970116112632
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |