Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_021559.1
Length=179063
Score E
Sequences producing significant alignments: (Bits) Value
seq28607 547 8e-151
>seq28607
Length=83266
Score = 547 bits (606), Expect = 8e-151
Identities = 725/1001 (72%), Gaps = 4/1001 (0%)
Strand=Plus/Minus
Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294
|| ||| | ||| |||| |||||| ||||| | ||| |||| ||||||||||| ||
Sbjct 1502 TTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 1443
Query 72295 ATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCC 72353
|||||||| | ||| | || || || | ||| ||| | |||||||| ||||||||
Sbjct 1442 ATGATCCC-TACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 1384
Query 72354 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT-TTCTTATATGGTAACA 72412
|||||| ||||| || || || | ||||| ||| | || ||| ||||| || || ||||
Sbjct 1383 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTT-TACGGAAACA 1325
Query 72413 ACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCA 72472
| || || || ||||| | |||| |||| || || || || || || || || |
Sbjct 1324 ATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGA 1265
Query 72473 TCTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTA 72532
|||||||||| || | | || || ||| | || ||||| |||||||| | || ||
Sbjct 1264 TCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTG 1205
Query 72533 TTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACA 72592
|| | ||||| | |||| | || || |||||| | |||||||||| | |
Sbjct 1204 TTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 1145
Query 72593 GACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTG 72652
| || || ||| | |||||||| ||| ||||| ||||| ||||| | || ||| ||
Sbjct 1144 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTG 1085
Query 72653 CAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTA 72712
| || ||| | | || ||| | ||||| || || |||||||||||||| ||||| |
Sbjct 1084 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 1025
Query 72713 TCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACC 72772
|||| ||||| |||||||| ||| | || ||||| || || |||||||| || |||||||
Sbjct 1024 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACC 965
Query 72773 CCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACG 72832
| || || ||| ||||||||| ||| | ||||| || || || ||||| ||||| |
Sbjct 964 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATG 905
Query 72833 GTTCACTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACG 72892
|||| | || ||||| | | ||||| || || ||||| || || | || | |
Sbjct 904 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 845
Query 72893 GCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCG 72952
| || || |||||||||||||||||||| || |||||||| ||||||||||| || || |
Sbjct 844 GTTACAAATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTG 785
Query 72953 GTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCG 73012
| |||| |||||||| ||||| |||||||| |||||||| ||||| |||||| | |
Sbjct 784 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 725
Query 73013 CTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCA 73072
| | | || ||||| || | ||||| || | | ||||| | || ||||| ||||
Sbjct 724 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACCATGGCTTTCA 665
Query 73073 ACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAA 73132
|||| || || ||||| |||||||||||||| || ||| | ||| || | |
Sbjct 664 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATA 605
Query 73133 CATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATG 73192
| |||| ||| || ||||| | || |||||||| |||||||||||||||||| | ||||
Sbjct 604 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 545
Query 73193 CACACAACTTCCCACTAGACCTAGCATCTGCTGAGTCTACA 73233
| ||||||||||| ||||||||||| ||| |||| || ||
Sbjct 544 CTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGGCTCCA 504
Score = 342 bits (378), Expect = 6e-89
Identities = 705/1049 (67%), Gaps = 21/1049 (2%)
Strand=Plus/Plus
Query 73353 AAAGAGAATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCG 73412
||| ||| | ||||| || | ||||| |||||| ||| || || ||||| || | |
Sbjct 32393 AAAAAGATTTATTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAG 32452
Query 73413 GATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAG 73472
| ||||||||||| || || || |||||||| || | || | || ||||||||| ||
Sbjct 32453 GTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAG 32512
Query 73473 GAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAG 73532
| || || || || || |||||||| || ||||| | || || ||| | || ||
Sbjct 32513 GTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTT 32572
Query 73533 CAAATTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGT 73592
||||||||||| || || || || || |||| | || | | | ||| | | ||||
Sbjct 32573 GCAATTTTTTAACCGCTGCCGTTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGT 32632
Query 73593 TCCTTTGGGGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTAT 73652
| || ||||| || || |||||||||||| || || |||| ||||||||| || || |
Sbjct 32633 TACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGT 32692
Query 73653 GGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTG 73712
|| ||||| || | || || | || | | | |||||||| ||| | | || ||||
Sbjct 32693 GGGCTTTTGTTGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTG 32752
Query 73713 AGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCG 73772
| |||| || ||| | || ||||| || ||| | || || || | || |
Sbjct 32753 AACTTGCTCGATCCGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTG 32812
Query 73773 CAGTATTCACGAGCATCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCAC 73832
| || || |||| ||||| ||||| | || || | |||||||||| || |
Sbjct 32813 CTGTTTTTGTTTCTGTCTTCCTAATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGC 32872
Query 73833 CTTCATTCGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATA 73892
|| || ||||| || || || ||||| | || | || | || || || || |||
Sbjct 32873 CTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATT 32932
Query 73893 TAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTAT 73952
|| | || ||||||||||||||||| || || ||| |||| || | || | ||||
Sbjct 32933 GGACATTGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCCGCTCTGCTAT 32992
Query 73953 GTGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTG 74012
| || || |||||||| || ||| | || || || | |||||| ||
Sbjct 32993 GCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGA---------------TG 33037
Query 74013 AAGGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTT 74072
| | | | ||| |||| ||| | || || | || || || | ||||| ||||
Sbjct 33038 --GTGATGGTGCAA-ATACA---TTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTT 33091
Query 74073 ATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACA 74132
|| ||| | || |||||| | || |||||||| || ||||| | || ||||| || |
Sbjct 33092 ATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATA 33151
Query 74133 AAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTA 74192
|| | | ||||| ||| ||||||| || ||||| || | ||| | |||| ||
Sbjct 33152 AACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGCTC 33211
Query 74193 TAGGTATCGTAGGTCTAGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAA 74252
| || | || || ||||| | ||||| | || || ||||| || || || || ||
Sbjct 33212 TTGGAGTAGTCGGCCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCC 33271
Query 74253 GAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAG 74312
| ||||| ||||| || || ||||| || ||||| ||||| || |||||| | || ||||
Sbjct 33272 GTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAG 33331
Query 74313 GTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAG 74372
|||| | || |||||| | || ||||| || ||||| ||| || | ||||| || |
Sbjct 33332 GTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGG 33391
Query 74373 AAGTCTTGCCACGAGGCAACGCACTATAA 74401
| || | ||||| || ||||| || |||
Sbjct 33392 AGGTTCTACCACGTGGAAACGCTCTTTAA 33420
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570960001670240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |