Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq28607 547 8e-151 >seq28607 Length=83266 Score = 547 bits (606), Expect = 8e-151 Identities = 725/1001 (72%), Gaps = 4/1001 (0%) Strand=Plus/Minus Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294 || ||| | ||| |||| |||||| ||||| | ||| |||| ||||||||||| || Sbjct 1502 TTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 1443 Query 72295 ATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCC 72353 |||||||| | ||| | || || || | ||| ||| | |||||||| |||||||| Sbjct 1442 ATGATCCC-TACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 1384 Query 72354 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT-TTCTTATATGGTAACA 72412 |||||| ||||| || || || | ||||| ||| | || ||| ||||| || || |||| Sbjct 1383 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTT-TACGGAAACA 1325 Query 72413 ACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCA 72472 | || || || ||||| | |||| |||| || || || || || || || || | Sbjct 1324 ATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGA 1265 Query 72473 TCTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTA 72532 |||||||||| || | | || || ||| | || ||||| |||||||| | || || Sbjct 1264 TCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTG 1205 Query 72533 TTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACA 72592 || | ||||| | |||| | || || |||||| | |||||||||| | | Sbjct 1204 TTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 1145 Query 72593 GACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTG 72652 | || || ||| | |||||||| ||| ||||| ||||| ||||| | || ||| || Sbjct 1144 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTG 1085 Query 72653 CAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTA 72712 | || ||| | | || ||| | ||||| || || |||||||||||||| ||||| | Sbjct 1084 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 1025 Query 72713 TCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACC 72772 |||| ||||| |||||||| ||| | || ||||| || || |||||||| || ||||||| Sbjct 1024 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACC 965 Query 72773 CCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACG 72832 | || || ||| ||||||||| ||| | ||||| || || || ||||| ||||| | Sbjct 964 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATG 905 Query 72833 GTTCACTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACG 72892 |||| | || ||||| | | ||||| || || ||||| || || | || | | Sbjct 904 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 845 Query 72893 GCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCG 72952 | || || |||||||||||||||||||| || |||||||| ||||||||||| || || | Sbjct 844 GTTACAAATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTG 785 Query 72953 GTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCG 73012 | |||| |||||||| ||||| |||||||| |||||||| ||||| |||||| | | Sbjct 784 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 725 Query 73013 CTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCA 73072 | | | || ||||| || | ||||| || | | ||||| | || ||||| |||| Sbjct 724 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACCATGGCTTTCA 665 Query 73073 ACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAA 73132 |||| || || ||||| |||||||||||||| || ||| | ||| || | | Sbjct 664 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATA 605 Query 73133 CATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATG 73192 | |||| ||| || ||||| | || |||||||| |||||||||||||||||| | |||| Sbjct 604 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 545 Query 73193 CACACAACTTCCCACTAGACCTAGCATCTGCTGAGTCTACA 73233 | ||||||||||| ||||||||||| ||| |||| || || Sbjct 544 CTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGGCTCCA 504 Score = 342 bits (378), Expect = 6e-89 Identities = 705/1049 (67%), Gaps = 21/1049 (2%) Strand=Plus/Plus Query 73353 AAAGAGAATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCG 73412 ||| ||| | ||||| || | ||||| |||||| ||| || || ||||| || | | Sbjct 32393 AAAAAGATTTATTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAG 32452 Query 73413 GATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAG 73472 | ||||||||||| || || || |||||||| || | || | || ||||||||| || Sbjct 32453 GTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAG 32512 Query 73473 GAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAG 73532 | || || || || || |||||||| || ||||| | || || ||| | || || Sbjct 32513 GTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTT 32572 Query 73533 CAAATTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGT 73592 ||||||||||| || || || || || |||| | || | | | ||| | | |||| Sbjct 32573 GCAATTTTTTAACCGCTGCCGTTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGT 32632 Query 73593 TCCTTTGGGGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTAT 73652 | || ||||| || || |||||||||||| || || |||| ||||||||| || || | Sbjct 32633 TACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGT 32692 Query 73653 GGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTG 73712 || ||||| || | || || | || | | | |||||||| ||| | | || |||| Sbjct 32693 GGGCTTTTGTTGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTG 32752 Query 73713 AGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCG 73772 | |||| || ||| | || ||||| || ||| | || || || | || | Sbjct 32753 AACTTGCTCGATCCGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTG 32812 Query 73773 CAGTATTCACGAGCATCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCAC 73832 | || || |||| ||||| ||||| | || || | |||||||||| || | Sbjct 32813 CTGTTTTTGTTTCTGTCTTCCTAATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGC 32872 Query 73833 CTTCATTCGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATA 73892 || || ||||| || || || ||||| | || | || | || || || || ||| Sbjct 32873 CTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATT 32932 Query 73893 TAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTAT 73952 || | || ||||||||||||||||| || || ||| |||| || | || | |||| Sbjct 32933 GGACATTGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCCGCTCTGCTAT 32992 Query 73953 GTGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTG 74012 | || || |||||||| || ||| | || || || | |||||| || Sbjct 32993 GCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGA---------------TG 33037 Query 74013 AAGGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTT 74072 | | | | ||| |||| ||| | || || | || || || | ||||| |||| Sbjct 33038 --GTGATGGTGCAA-ATACA---TTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTT 33091 Query 74073 ATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACA 74132 || ||| | || |||||| | || |||||||| || ||||| | || ||||| || | Sbjct 33092 ATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATA 33151 Query 74133 AAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTA 74192 || | | ||||| ||| ||||||| || ||||| || | ||| | |||| || Sbjct 33152 AACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGCTC 33211 Query 74193 TAGGTATCGTAGGTCTAGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAA 74252 | || | || || ||||| | ||||| | || || ||||| || || || || || Sbjct 33212 TTGGAGTAGTCGGCCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCC 33271 Query 74253 GAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAG 74312 | ||||| ||||| || || ||||| || ||||| ||||| || |||||| | || |||| Sbjct 33272 GTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAG 33331 Query 74313 GTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAG 74372 |||| | || |||||| | || ||||| || ||||| ||| || | ||||| || | Sbjct 33332 GTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGG 33391 Query 74373 AAGTCTTGCCACGAGGCAACGCACTATAA 74401 | || | ||||| || ||||| || ||| Sbjct 33392 AGGTTCTACCACGTGGAAACGCTCTTTAA 33420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570960001670240