Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_021781.2
Length=135281
Score E
Sequences producing significant alignments: (Bits) Value
seq78791 107 2e-18
seq151743 95.1 1e-14
seq206067 84.2 2e-11
>seq78791
Length=51567
Score = 107 bits (118), Expect = 2e-18
Identities = 233/338 (69%), Gaps = 18/338 (5%)
Strand=Plus/Plus
Query 97467 GGAGCACCCATTAGAGGAGTTCTC-GGTGCTAGTGGAGGAACAGTACCTTGGATTAAACA 97525
|| || || ||| | ||| ||| | || || || || ||| |||||||||||| |||
Sbjct 45980 GGTGCTCCTATTCGTGGA-TTCGCTGGAGCAAGCGGTGGAGTTGTACCTTGGATTCGACA 46038
Query 97526 GTTGAATAACACGGCTGTTAGTGTAGACCAATTAGG--AGCAAGAAAAGGTGCTATAACT 97583
| || ||||| ||||| |||||||||||||| ||| || || ||| || |
Sbjct 46039 ACTAAACAACACAGCTGTCTCAGTAGACCAATTAGGTAAGC--GATCTGGAGCTGTAGCG 46096
Query 97584 GTAACGTTAGACGTTTTCCACAAAGATATAGAAGCCTTTCTGGATTTAAGACTAAACAAC 97643
|| | ||| | ||||||||||| | ||||||| || || || |||| | ||||
Sbjct 46097 GTTTATCTTGACATCTTCCACAAAGACGTGCAAGCCTTCCTAGACCTACGACTTAGCAAC 46156
Query 97644 GGAGACCAACGTTTACGGGCTCATGACATT----TTTACTTCTGTTTCTATTCCTGATTT 97699
|||||| || ||| |||||||| ||| || ||| || |||||| |||||
Sbjct 46157 GGAGACGAAAAAGAACGAGCTCATGAGATTCACCTTGGCTTATG----TATTCCAGATTT 46212
Query 97700 ATTTATG-GAA-GCAGTAGAGAATAGAGGAGAATGGTATTTATTTGACCCTTACGAGGTT 97757
||||||| ||| || | |||||| | ||||| ||| || ||||| || || || ||
Sbjct 46213 ATTTATGAGAACGCTG-AGAGAAGA-CGGAGAGTGGCATCTATTTTGTCCGTATGAAGTA 46270
Query 97758 AAACAGAAAAAAGGTTGGTACCTACAAGACTACTACGA 97795
|| || | || ||| | |||||||| | ||||||
Sbjct 46271 GAAAAGTTTATGGGATGGAAACTACAAGATTGCTACGA 46308
>seq151743
Length=442
Score = 95.1 bits (104), Expect = 1e-14
Identities = 80/95 (84%), Gaps = 4/95 (4%)
Strand=Plus/Plus
Query 44466 CCGTGCTAAATCAGG-CGCA--AGCTTGTAAATGCCTAACGACTAAATTTCTAGGTAGCT 44522
|||||||||||||| || | |||| ||||||||||||||||||||||||| |||||||
Sbjct 309 CCGTGCTAAATCAGCTCGTATGAGCT-GTAAATGCCTAACGACTAAATTTCTGGGTAGCT 367
Query 44523 AACCAAATGGGGTTAGTGAGAACTAGATAAGAAAA 44557
|||||| |||||||||| |||||||||||
Sbjct 368 GGTAAAATGGTACTAGTGAGAACCAGATAAGAAAA 402
>seq206067
Length=18993
Score = 84.2 bits (92), Expect = 2e-11
Identities = 194/291 (67%), Gaps = 6/291 (2%)
Strand=Plus/Plus
Query 98508 ATTCAAGTTAGGATGCTAGACAATGTAATTGAGTTAAACAAACTACCTGTACCACAAGCT 98567
|||||| | ||||||| || || || || || | |||| | ||| || |||||
Sbjct 12510 ATTCAAATGCGGATGCTCGATAACGTCATCGATCTCAACACGATTGATGTGCCGCAAGCA 12569
Query 98568 CTAATTACTAACCAGAAGTATAGGGCAGTGGGATTAGGAACTTTTGGGTGGCACCACCTA 98627
| || || |||||||| || ||||||| ||| | || || || || ||||| |||||
Sbjct 12570 CAGATCACGAACCAGAAATACCGGGCAGTTGGACTCGGGACATTCGGCTGGCATCACCTG 12629
Query 98628 CTAGCTAAAAAAGGTATTCATTGGGACAGTGAAGAGGCTACTAATTTTGCAGATAGCCTA 98687
|| || |||| || | |||||| | |||||| | | | || ||| | ||
Sbjct 12630 CTCGCACTCGAAGGCATCCGTTGGGAATCGGTCGAGGCTGTTCAGTACGCCGATCGTCTC 12689
Query 98688 TATGAAAGAATTGCTTTTCACACTATCGAAGCAAGTATGAAACTAGCCGAGGAAAAAGGA 98747
|| |||| ||| || | || || || ||| ||| |||| || | ||||||||
Sbjct 12690 TACGAAAAAATCGCATACTTGACGATTGATGCATCAATGCAACTGGCGAAAGAAAAAGGG 12749
Query 98748 GCTTACCCATACTTTAAAGACAGTTCG---TGGGATACAGGGGAGTACTTC 98795
||||||| |||| ||| | ||| ||| | |||||||||||| ||
Sbjct 12750 GCTTACCGTCTCTTTGAAG---GATCGGAGTGGCAAACAGGGGAGTACATC 12797
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 431364922482136
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |