Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_021781.2 Length=135281 Score E Sequences producing significant alignments: (Bits) Value seq78791 107 2e-18 seq151743 95.1 1e-14 seq206067 84.2 2e-11 >seq78791 Length=51567 Score = 107 bits (118), Expect = 2e-18 Identities = 233/338 (69%), Gaps = 18/338 (5%) Strand=Plus/Plus Query 97467 GGAGCACCCATTAGAGGAGTTCTC-GGTGCTAGTGGAGGAACAGTACCTTGGATTAAACA 97525 || || || ||| | ||| ||| | || || || || ||| |||||||||||| ||| Sbjct 45980 GGTGCTCCTATTCGTGGA-TTCGCTGGAGCAAGCGGTGGAGTTGTACCTTGGATTCGACA 46038 Query 97526 GTTGAATAACACGGCTGTTAGTGTAGACCAATTAGG--AGCAAGAAAAGGTGCTATAACT 97583 | || ||||| ||||| |||||||||||||| ||| || || ||| || | Sbjct 46039 ACTAAACAACACAGCTGTCTCAGTAGACCAATTAGGTAAGC--GATCTGGAGCTGTAGCG 46096 Query 97584 GTAACGTTAGACGTTTTCCACAAAGATATAGAAGCCTTTCTGGATTTAAGACTAAACAAC 97643 || | ||| | ||||||||||| | ||||||| || || || |||| | |||| Sbjct 46097 GTTTATCTTGACATCTTCCACAAAGACGTGCAAGCCTTCCTAGACCTACGACTTAGCAAC 46156 Query 97644 GGAGACCAACGTTTACGGGCTCATGACATT----TTTACTTCTGTTTCTATTCCTGATTT 97699 |||||| || ||| |||||||| ||| || ||| || |||||| ||||| Sbjct 46157 GGAGACGAAAAAGAACGAGCTCATGAGATTCACCTTGGCTTATG----TATTCCAGATTT 46212 Query 97700 ATTTATG-GAA-GCAGTAGAGAATAGAGGAGAATGGTATTTATTTGACCCTTACGAGGTT 97757 ||||||| ||| || | |||||| | ||||| ||| || ||||| || || || || Sbjct 46213 ATTTATGAGAACGCTG-AGAGAAGA-CGGAGAGTGGCATCTATTTTGTCCGTATGAAGTA 46270 Query 97758 AAACAGAAAAAAGGTTGGTACCTACAAGACTACTACGA 97795 || || | || ||| | |||||||| | |||||| Sbjct 46271 GAAAAGTTTATGGGATGGAAACTACAAGATTGCTACGA 46308 >seq151743 Length=442 Score = 95.1 bits (104), Expect = 1e-14 Identities = 80/95 (84%), Gaps = 4/95 (4%) Strand=Plus/Plus Query 44466 CCGTGCTAAATCAGG-CGCA--AGCTTGTAAATGCCTAACGACTAAATTTCTAGGTAGCT 44522 |||||||||||||| || | |||| ||||||||||||||||||||||||| ||||||| Sbjct 309 CCGTGCTAAATCAGCTCGTATGAGCT-GTAAATGCCTAACGACTAAATTTCTGGGTAGCT 367 Query 44523 AACCAAATGGGGTTAGTGAGAACTAGATAAGAAAA 44557 |||||| |||||||||| ||||||||||| Sbjct 368 GGTAAAATGGTACTAGTGAGAACCAGATAAGAAAA 402 >seq206067 Length=18993 Score = 84.2 bits (92), Expect = 2e-11 Identities = 194/291 (67%), Gaps = 6/291 (2%) Strand=Plus/Plus Query 98508 ATTCAAGTTAGGATGCTAGACAATGTAATTGAGTTAAACAAACTACCTGTACCACAAGCT 98567 |||||| | ||||||| || || || || || | |||| | ||| || ||||| Sbjct 12510 ATTCAAATGCGGATGCTCGATAACGTCATCGATCTCAACACGATTGATGTGCCGCAAGCA 12569 Query 98568 CTAATTACTAACCAGAAGTATAGGGCAGTGGGATTAGGAACTTTTGGGTGGCACCACCTA 98627 | || || |||||||| || ||||||| ||| | || || || || ||||| ||||| Sbjct 12570 CAGATCACGAACCAGAAATACCGGGCAGTTGGACTCGGGACATTCGGCTGGCATCACCTG 12629 Query 98628 CTAGCTAAAAAAGGTATTCATTGGGACAGTGAAGAGGCTACTAATTTTGCAGATAGCCTA 98687 || || |||| || | |||||| | |||||| | | | || ||| | || Sbjct 12630 CTCGCACTCGAAGGCATCCGTTGGGAATCGGTCGAGGCTGTTCAGTACGCCGATCGTCTC 12689 Query 98688 TATGAAAGAATTGCTTTTCACACTATCGAAGCAAGTATGAAACTAGCCGAGGAAAAAGGA 98747 || |||| ||| || | || || || ||| ||| |||| || | |||||||| Sbjct 12690 TACGAAAAAATCGCATACTTGACGATTGATGCATCAATGCAACTGGCGAAAGAAAAAGGG 12749 Query 98748 GCTTACCCATACTTTAAAGACAGTTCG---TGGGATACAGGGGAGTACTTC 98795 ||||||| |||| ||| | ||| ||| | |||||||||||| || Sbjct 12750 GCTTACCGTCTCTTTGAAG---GATCGGAGTGGCAAACAGGGGAGTACATC 12797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 431364922482136