Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_021802.1
Length=53664
Score E
Sequences producing significant alignments: (Bits) Value
seq541 132 2e-26
seq155643 111 5e-20
>seq541
Length=763
Score = 132 bits (146), Expect = 2e-26
Identities = 192/268 (72%), Gaps = 10/268 (4%)
Strand=Plus/Plus
Query 32517 TTATAAACGAGTATAAACTAATGGAATACTCTTTTCTATCTAGTTGGGCTGCTAATGAAT 32576
|||| |||||||| ||| ||||||| || || ||| | || ||||||| || || ||||
Sbjct 1 TTATCAACGAGTACAAATTAATGGAGTATTCATTTTTGTCAAGTTGGGGAGCAAACGAAT 60
Query 32577 TAAGCACCGTTCAAGATGTAAAAGGAATACAAACCCATTACGGTATACTTGAATTAATTG 32636
|||| || || |||| | ||| | || ||| |||||||||||| | ||||||||||
Sbjct 61 TAAGTACTGTACAAGGACTTAAAAGCATCAAAAGCCATTACGGTATTATGGAATTAATTG 120
Query 32637 aaaaaaaaTACAATTTACCTTATTCTGATACTAGACTAAGAGAGATTGAAACAATATTAA 32696
| ||| || || ||| |||| ||| ||| ||||| | || ||| | ||||||
Sbjct 121 AGAAAGCTTATAACTTAGATTATAGCGATCAAAGATTAAGAAATATCGAAGAATTATTAA 180
Query 32697 AAGCACTTTCAAGTAACGAGCCGTTAGACATACTTAACACTCCCAAAGACGAGCCGCTTA 32756
|| ||||||| | |||||| ||| | || |||| || || |||||| |||
Sbjct 181 AATCACTTTC---GGATGAGCCGGCAGA---AATTGTCACTTTGAACGAGGAGCCGATTA 234
Query 32757 TATT--AGACACTTTAAAATCATTTACA 32782
|||| | |||||| ||||| ||||||
Sbjct 235 TATTGAATACACTTAAAAAT--TTTACA 260
>seq155643
Length=347
Score = 111 bits (122), Expect = 5e-20
Identities = 85/101 (84%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 33794 CTGTTTACAAGGCTTCTTGGATGGCTGCTAATAAATACTATGTTGGTGACTTCTCAAGAG 33853
|||||||||| ||| | ||| |||||||||| ||||| | |||||| |||| |||||||
Sbjct 223 CTGTTTACAAAGCTACATGGTTGGCTGCTAACAAATATTTTGTTGGAGACTGGTCAAGAG 282
Query 33854 TTAAGAAAATTGTTACAGAAGGTTTATCTTTAGAATTCTCT 33894
|||| ||| | ||||| |||||||||||||||| ||||||
Sbjct 283 TTAACAAAGTAGTTACTCAAGGTTTATCTTTAGAGTTCTCT 323
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 171058645988336
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |