Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_021802.1 Length=53664 Score E Sequences producing significant alignments: (Bits) Value seq541 132 2e-26 seq155643 111 5e-20 >seq541 Length=763 Score = 132 bits (146), Expect = 2e-26 Identities = 192/268 (72%), Gaps = 10/268 (4%) Strand=Plus/Plus Query 32517 TTATAAACGAGTATAAACTAATGGAATACTCTTTTCTATCTAGTTGGGCTGCTAATGAAT 32576 |||| |||||||| ||| ||||||| || || ||| | || ||||||| || || |||| Sbjct 1 TTATCAACGAGTACAAATTAATGGAGTATTCATTTTTGTCAAGTTGGGGAGCAAACGAAT 60 Query 32577 TAAGCACCGTTCAAGATGTAAAAGGAATACAAACCCATTACGGTATACTTGAATTAATTG 32636 |||| || || |||| | ||| | || ||| |||||||||||| | |||||||||| Sbjct 61 TAAGTACTGTACAAGGACTTAAAAGCATCAAAAGCCATTACGGTATTATGGAATTAATTG 120 Query 32637 aaaaaaaaTACAATTTACCTTATTCTGATACTAGACTAAGAGAGATTGAAACAATATTAA 32696 | ||| || || ||| |||| ||| ||| ||||| | || ||| | |||||| Sbjct 121 AGAAAGCTTATAACTTAGATTATAGCGATCAAAGATTAAGAAATATCGAAGAATTATTAA 180 Query 32697 AAGCACTTTCAAGTAACGAGCCGTTAGACATACTTAACACTCCCAAAGACGAGCCGCTTA 32756 || ||||||| | |||||| ||| | || |||| || || |||||| ||| Sbjct 181 AATCACTTTC---GGATGAGCCGGCAGA---AATTGTCACTTTGAACGAGGAGCCGATTA 234 Query 32757 TATT--AGACACTTTAAAATCATTTACA 32782 |||| | |||||| ||||| |||||| Sbjct 235 TATTGAATACACTTAAAAAT--TTTACA 260 >seq155643 Length=347 Score = 111 bits (122), Expect = 5e-20 Identities = 85/101 (84%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 33794 CTGTTTACAAGGCTTCTTGGATGGCTGCTAATAAATACTATGTTGGTGACTTCTCAAGAG 33853 |||||||||| ||| | ||| |||||||||| ||||| | |||||| |||| ||||||| Sbjct 223 CTGTTTACAAAGCTACATGGTTGGCTGCTAACAAATATTTTGTTGGAGACTGGTCAAGAG 282 Query 33854 TTAAGAAAATTGTTACAGAAGGTTTATCTTTAGAATTCTCT 33894 |||| ||| | ||||| |||||||||||||||| |||||| Sbjct 283 TTAACAAAGTAGTTACTCAAGGTTTATCTTTAGAGTTCTCT 323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 171058645988336