Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq27195 138 1e-26
seq146431 114 2e-19
>seq27195
Length=13093
Score = 138 bits (152), Expect = 1e-26
Identities = 197/274 (72%), Gaps = 4/274 (1%)
Strand=Plus/Minus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
|| ||||| ||||| || ||||||||||| ||||| || || | | | || | |||||
Sbjct 8931 GAATGGATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCTTCAGAGACTTGT 8872
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
|| || |||||| || || || ||||| ||||| ||||| ||||||||
Sbjct 8871 ACATCTGACATGAATCGAGAAGCGAGATTCTCTAGAACGATTCCGTCAGATGCGGCGAAG 8812
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGT--GGA 869810
||||| |||||||| ||||| ||||| || || ||||| |||| | |||||| |
Sbjct 8811 AAAGCGAGGACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAGATTCTCCCAGTCACGT 8752
Query 869811 CGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870
| || | | | | || || || || ||||||||||||| ||| || ||||| || ||||
Sbjct 8751 CCGTCT-TGTGAT-AGATCTACTTCTTCGGCGGTCCAGAACGATGCTTCGGCTTTCTTGT 8694
Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904
|||||||||| | || ||||| | || || ||
Sbjct 8693 ACATCTCCCAGATCTGTGGGTAGTGAATCGGAAA 8660
>seq146431
Length=15796
Score = 114 bits (126), Expect = 2e-19
Identities = 193/274 (70%), Gaps = 4/274 (1%)
Strand=Plus/Plus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
|| ||||| ||||| || ||||| || || ||||| || || | | | || | |||||
Sbjct 4428 GAATGGATATTCTCAATCGCGATTTGAAATCCGTAGAATGCACGCGCTTCGGAGACTTGT 4487
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
|| || |||||| || || || || ||| ||||| ||||| ||||||||
Sbjct 4488 ACATCTGACATGAATCGAGAAGCGAGATTTTCGAGGACGATTCCGTCAGATGCGGCGAAG 4547
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812
|| || |||||||| ||||| ||||| || || ||||| |||| |||||| |||
Sbjct 4548 AAGGCGAGGACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAGATTTTCCCAGTC-ACG 4606
Query 869813 GT-GTCG-GCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870
||| | | | || || || || ||||||||||||| || || ||||| || ||||
Sbjct 4607 TCCGTCTTGTGAT-AGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTTTCTTGT 4665
Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904
|||||||||| | || ||||| | || || ||
Sbjct 4666 ACATCTCCCAGATCTGTGGGTAGTGAATCGGAAA 4699
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6085209218891276
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |