Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq27195 138 1e-26 seq146431 114 2e-19 >seq27195 Length=13093 Score = 138 bits (152), Expect = 1e-26 Identities = 197/274 (72%), Gaps = 4/274 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || ||||| ||||| || ||||||||||| ||||| || || | | | || | ||||| Sbjct 8931 GAATGGATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCTTCAGAGACTTGT 8872 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||| || || || ||||| ||||| ||||| |||||||| Sbjct 8871 ACATCTGACATGAATCGAGAAGCGAGATTCTCTAGAACGATTCCGTCAGATGCGGCGAAG 8812 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGT--GGA 869810 ||||| |||||||| ||||| ||||| || || ||||| |||| | |||||| | Sbjct 8811 AAAGCGAGGACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAGATTCTCCCAGTCACGT 8752 Query 869811 CGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 | || | | | | || || || || ||||||||||||| ||| || ||||| || |||| Sbjct 8751 CCGTCT-TGTGAT-AGATCTACTTCTTCGGCGGTCCAGAACGATGCTTCGGCTTTCTTGT 8694 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 |||||||||| | || ||||| | || || || Sbjct 8693 ACATCTCCCAGATCTGTGGGTAGTGAATCGGAAA 8660 >seq146431 Length=15796 Score = 114 bits (126), Expect = 2e-19 Identities = 193/274 (70%), Gaps = 4/274 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || ||||| ||||| || ||||| || || ||||| || || | | | || | ||||| Sbjct 4428 GAATGGATATTCTCAATCGCGATTTGAAATCCGTAGAATGCACGCGCTTCGGAGACTTGT 4487 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||| || || || || ||| ||||| ||||| |||||||| Sbjct 4488 ACATCTGACATGAATCGAGAAGCGAGATTTTCGAGGACGATTCCGTCAGATGCGGCGAAG 4547 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || |||||||| ||||| ||||| || || ||||| |||| |||||| ||| Sbjct 4548 AAGGCGAGGACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAGATTTTCCCAGTC-ACG 4606 Query 869813 GT-GTCG-GCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 ||| | | | || || || || ||||||||||||| || || ||||| || |||| Sbjct 4607 TCCGTCTTGTGAT-AGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTTTCTTGT 4665 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 |||||||||| | || ||||| | || || || Sbjct 4666 ACATCTCCCAGATCTGTGGGTAGTGAATCGGAAA 4699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6085209218891276