Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_022094.1 Length=14319 Score E Sequences producing significant alignments: (Bits) Value seq925 367 1e-97 seq243569 347 1e-91 seq15950 338 6e-89 seq70767 288 9e-74 seq49706 221 1e-53 seq119555 183 3e-42 >seq925 Length=345 Score = 367 bits (406), Expect = 1e-97 Identities = 282/332 (85%), Gaps = 3/332 (1%) Strand=Plus/Plus Query 922 AATCGTTTATTGAAAAACAATACTATAGATATATTAAGTAGAACAGAAGAGTTCAAACAA 981 || |||||||| |||||| | || |||||||| ||||||| ||||||| || ||||| Sbjct 15 AAGCGTTTATTAAAAAACGACACAATAGATATCATAAGTAGGTCAGAAGAATTTAAACAG 74 Query 982 TTTATTGGTAGAGGTAAAAAACCACCAAAGCATATGATTAAAGATATTAAACGAATAAAT 1041 | ||||| | ||| ||| ||||||||| |||||||||| ||||||||||| || ||| Sbjct 75 ATCATTGGGAAAGGCAAAGTGCCACCAAAGTATATGATTAATGATATTAAACGCATTAAT 134 Query 1042 AAATTCATGGGAGCAAGTCCGAACGGACAGCCAGGTTTATTTGTTGTAAGGGAAATGTAC 1101 ||| ||||||| ||||| || | |||| | || ||||| ||||||||||||||||||||| Sbjct 135 AAAATCATGGGTGCAAGCCCAAGCGGAAAACCTGGTTTTTTTGTTGTAAGGGAAATGTAC 194 Query 1102 ATCAATGGTTTGACTGAATTAGAAGCTATTGAACTTATAAAGGACAGGCAAAGTCCAGTT 1161 |||||||| ||||| |||| |||||||||||||||||||| || ||||||||||||||| Sbjct 195 ATCAATGGGTTGACAGAATCAGAAGCTATTGAACTTATAAGAGAGAGGCAAAGTCCAGTT 254 Query 1162 GATAAAGATACGGTTTTTTATAGTTGATT--AAAAATCACAGTGAAGGTGGAATAAAATA 1219 ||||||||||| ||||||||||||| ||| |||||||| ||| ||| |||||||| || Sbjct 255 GATAAAGATACCGTTTTTTATAGTTAATTAAAAAAATCATAGTAGAGG-GGAATAAAGTA 313 Query 1220 TGATGAATGATACAGAGAAAACTATTTTTAAT 1251 ||||||| |||||||| ||||||||||||||| Sbjct 314 TGATGAACGATACAGAAAAAACTATTTTTAAT 345 >seq243569 Length=357 Score = 347 bits (384), Expect = 1e-91 Identities = 291/357 (82%), Gaps = 0/357 (0%) Strand=Plus/Minus Query 13486 CATTTAAAACTTTAGATACCCCTATACTTTCACCATTGCCGATATCTAATTCTATAATGG 13545 |||| || |||||||| || || |||||||||||||| |||||||||||||| ||||| | Sbjct 357 CATTCAACACTTTAGAAACACCGATACTTTCACCATTACCGATATCTAATTCAATAATAG 298 Query 13546 GAGGTTCTGTCCACGAACCACTTTTCTTATGAAATTTTCCGTTTATACCTTTTAAAACTC 13605 | ||||||||||||| ||||| || |||||||| |||||||||||||| || ||||||| Sbjct 297 GGGGTTCTGTCCACGTCCCACTCTTTTTATGAAACTTTCCGTTTATACCCTTCAAAACTC 238 Query 13606 TTTGGAATATTTTCACCTGTTCATCTTGTTCTAAGTATTTTCTTTTCATTAATAACTTTA 13665 | || ||| | | || ||||| ||||| ||| | ||| | || |||||| ||||| | Sbjct 237 TCTGAAATGTCGTTACTTGTTCGTCTTGAGATAATTTTTTACATTCCATTAACAACTTCA 178 Query 13666 AAATAAGGATTGATTCAATTTCATTAAAGTGACAAATAATTTTATTATTAAAATGACAAT 13725 |||||| || ||||||||||| | |||||||||||| || || || ||||||||||||| Sbjct 177 GAATAAGAATGGATTCAATTTCGTCAAAGTGACAAATGATCTTGTTGTTAAAATGACAAT 118 Query 13726 CTTTAATGATATTTTTCAGCATGTAAATAACCGATAAATCCATATCCTTTTCGTTTTCCC 13785 |||||||||| | || | ||||| || | | ||||||||||| ||||| ||||| | Sbjct 117 CTTTAATGATGCTCTTTAACATGTTGATGATTGTAAAATCCATATCTTTTTCATTTTCTC 58 Query 13786 GATAAATATAGTGATATCCGTTTTTCTTTGTCACAGGATTGTACGAGCAAAAACCAA 13842 ||||||||| ||||| || || ||||| || | ||||||||||||||||||||||| Sbjct 57 TATAAATATAATGATAACCATTCTTCTTAGTTATAGGATTGTACGAGCAAAAACCAA 1 >seq15950 Length=319 Score = 338 bits (374), Expect = 6e-89 Identities = 262/312 (84%), Gaps = 0/312 (0%) Strand=Plus/Minus Query 12179 TAATACACTATCAAAACAATGATCCAAATAATCATATGCTGGTCTTTCTGTGTTAGGCAT 12238 ||| | |||||||||||||| ||| ||||||||||| || ||||| | || | || | Sbjct 312 TAAAATACTATCAAAACAATTATCTAAATAATCATAAGCCGGTCTATTTGAATCTGGTGT 253 Query 12239 TTCGAACTTAACACAATCTGTTAAAATGGAAATTACCTTACCGCCATTTCTTTCTATGTT 12298 |||||| ||||| |||||||||||||| ||||| || |||| ||||| ||||||| || Sbjct 252 TTCGAATTTAACGCAATCTGTTAAAATTGAAATAACTCTACCACCATTCTTTTCTATATT 193 Query 12299 TAACGCTCCTTCTTGCACTCTTATTCTACCGAATGCGGTTATCATAGACGATACAATCGG 12358 || || |||||||| ||||||||||| |||||||| ||||||||||| || ||||| || Sbjct 192 CAAAGCACCTTCTTGAACTCTTATTCTTCCGAATGCTGTTATCATAGAAGAAACAATTGG 133 Query 12359 ATTAAACATATAACCTACATCGAATCCAGCGAAATATATTTCCTGCTCACCATCTTCATT 12418 |||||||||||| |||||||| || || || |||||||||||||| ||||||||||| || Sbjct 132 ATTAAACATATATCCTACATCAAAACCCGCAAAATATATTTCCTGTTCACCATCTTCGTT 73 Query 12419 TTCTGAACAAGCATACTGTTGAAAGGCTTGAAAGAACTTTCCGTATATAGCATTCGTAAT 12478 ||| |||||||| || ||||| || ||||||||||||||||| || || |||||| | || Sbjct 72 TTCCGAACAAGCGTATTGTTGGAAAGCTTGAAAGAACTTTCCATAAATTGCATTCATGAT 13 Query 12479 TAATTTAACAAT 12490 |||||||||||| Sbjct 12 TAATTTAACAAT 1 >seq70767 Length=496 Score = 288 bits (318), Expect = 9e-74 Identities = 303/395 (77%), Gaps = 3/395 (1%) Strand=Plus/Minus Query 1534 AATAGAACAAAAAGAATAATTTAATTCTAAAGACTAAC-TTTCAGGTTAGTCTTTTTT-A 1591 ||||||| |||| || |||||||| | |||| || ||| ||||| ||||||||| | Sbjct 496 AATAGAAAGAAAAACATCATTTAATTTTCG-GACTGACCTTTTAGGTTGGTCTTTTTTTA 438 Query 1592 TTTACCTAAAAATGTCACATTGTGTCACAGTACACTATATATTGTGTTTTATTTTTTAGT 1651 ||| | | ||||||| |||||||| | ||||||||||||||||| | || Sbjct 437 TTTGTGTTTTATTGTCACAATGTGTCACGTCATACTATATATTGTGTTTTGCGATAGTGT 378 Query 1652 TATATACTAAATGTAGAAAAACAAAAGGGGTGTAACAAATGAAAATCCATGATAAGAAAT 1711 |||| ||| || |||||||||||||||||||||| || ||||| | |||||||| ||| Sbjct 377 TATACACTGTATTTAGAAAAACAAAAGGGGTGTAAGAAGTGAAAGTTCATGATAAAGAAT 318 Query 1712 TTGAAATTGATAAAGAATTATCGGATGCAATTTGTTGGGAGTTGTCGGAATATCAAACAA 1771 | ||| | ||||||| || |||||||| |||||||| || | ||||||||||||| Sbjct 317 TCAAAACAAGTCAAGAATTGTCTGATGCAATCTGTTGGGAATTAGCTGAATATCAAACAA 258 Query 1772 TAATAACTTTAGCTTTGACTAATTGTAGCAAAGATGAAGTTTTGAAAATATCACAATTGG 1831 |||| ||||||||||| | ||||||||| || || ||||||| ||||||| | || ||| Sbjct 257 TAATCACTTTAGCTTTAAGTAATTGTAGTAAGGAAGAAGTTTCTAAAATATTAAAAGTGG 198 Query 1832 TTGATAGAAATGAACGTTTTTCTGAAACAACTAAAGAATGGTTGAAAGAAACTATAAATA 1891 |||| ||| || ||||||||| || || || |||||||| ||| ||| |||| | | Sbjct 197 TTGAAAGAGGAGAGCGTTTTTCTAGTACTACAAAGGAATGGTTAAAACAAAATATAGAAA 138 Query 1892 AATTCCATAAACCTATATGGGAGATGGAATTAAAA 1926 |||||| ||||| | |||||| | ||| ||||| Sbjct 137 CATTCCACAAACCAAAATGGGATAAGGAGGTAAAA 103 >seq49706 Length=331 Score = 221 bits (244), Expect = 1e-53 Identities = 250/336 (74%), Gaps = 10/336 (3%) Strand=Plus/Plus Query 301 ATTGATTACTTTGAAAAAGCTGATGATAAGCTATTCATTGAGTTGCATGATTTCTTTTAT 360 |||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 3 ATTGATTACTTTGAGAAAGCTGATGACAAGCTATTTATTGAGTTGCATGATTTCTTTTAT 62 Query 361 GAAACGATGAAAAGCAAATACGAGGATAGTTAGGTATGGCTAAAATCCACCCTTACCCTC 420 |||| ||| || ||||| |||||||||||| ||||||||||| | || ||| | Sbjct 63 AAAACAATGCAACAGAAATATGAGGATAGTTAGACATGGCTAAAATATATCCATACATAC 122 Query 421 AATACGTTAGGAAAATTATTTGTACAGATTGTGGATGTATAATAGaaaaaaaCATTAATT 480 ||||| ||||||||||||| ||||||||| ||||| | ||||||| ||||||| Sbjct 123 AATACAAACAAAAAATTATTTGTAAAGATTGTGGGTGTATCAACGAAAAAATAATTAATT 182 Query 481 ATAAACCGCCTAAAAATAATTATTTTCAGAAGTGCAATGAAYGCCAAAGTCCAAACACTA 540 |||| || ||| ||||||||||| | || || | || || || |||||| Sbjct 183 ATAATCCTAGAAAACATAATTATTTTTTGTGTTGTCCGGAGTGTGAAGGTTCAGACACTA 242 Query 541 TTGTTTCTTA--CAAAGAGAANNNNNNNNNNNNNNNNACATAATATGGAGTGATT-TAAT 597 |||||||||| |||||||| |||| | ||| |||||| || Sbjct 243 TTGTTTCTTATTCAAAGAGA------GAAAGAGAGAAACATTA-ATGAGGTGATTGTATG 295 Query 598 TTGAAGAAGAAGAAGACACTTTATAAAGAGATAAGA 633 ||||||||| |||||||||||||| ||||||| Sbjct 296 AAGAAGAAGAAAAAGACACTTTATAAGACGATAAGA 331 >seq119555 Length=485 Score = 183 bits (202), Expect = 3e-42 Identities = 214/284 (75%), Gaps = 19/284 (7%) Strand=Plus/Plus Query 11235 TTTGTCGCTTTATAAAGTGACTTCTTCTTCTTC---GACTCGCTAATAGCGGGTCttttt 11291 ||| ||| |||||||||||||| ||||||||| ||||||||||||||| |||||||| Sbjct 211 TTTATCGTCTTATAAAGTGACTTTTTCTTCTTCTTTGACTCGCTAATAGCGAGTCTTTTT 270 Query 11292 tt-tGTTCATA---AAAAAGAGAGTAGACATTCGTGGTATCTACTCTCTTTGCATCAAGC 11347 || |||| | | ||| | | || |||| | ||| | || || | |||| Sbjct 271 TTATGTTTAAATATAAACAAAAAGCGGACAACTG------CTATTGTCC--GCTTTAAGC 322 Query 11348 TGCTGGTTTTATTCCCCTTTCATTT--AATAGGTCACGCATTTTTTCGATTCCGTAATCC 11405 | |||| ||| ||| |||| |||| |||||||| ||||| ||||| |||||| Sbjct 323 TATAGGTTCTATATT--TTTGATTTTCAATAAATCACGCATCTTTTCAATTCCATAATCC 380 Query 11406 CTTGCGTTGTGACCTCCATTGCTGCCTTCCTTCATTGTGAATTTATCAAATGGAAATAAA 11465 |||||||||||||| ||||| || || || ||||| || || ||||| || | |||||| Sbjct 381 CTTGCGTTGTGACCGCCATTACTACCCTCTTTCATCGTAAACTTATCGAAAGAGAATAAA 440 Query 11466 TTTATATTTTCTTTTATTTGTTTTTGTAAGACTGATAATATTTC 11509 | ||||||||||||||||| ||||| || ||||||||||||| Sbjct 441 TCAATATTTTCTTTTATTTGCTTTTGCAAAGCTGATAATATTTC 484 Lambda K H 0.634 0.408 0.913 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 45561187639048