Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_022096.1 Length=258139 Score E Sequences producing significant alignments: (Bits) Value seq249645 156 7e-33 seq252826 91.5 2e-13 seq134546 84.2 4e-11 >seq249645 Length=476466 Score = 156 bits (172), Expect = 7e-33 Identities = 219/308 (71%), Gaps = 6/308 (2%) Strand=Plus/Plus Query 35454 GTCACACCCGTCTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATTTCGCAGTCC 35513 |||||||| ||| || || || ||||| || ||||| ||||| | ||||| | Sbjct 450758 GTCACACCGCGCTGACCTTGATACTTACCACCACGATCTTTGTAACTCGTCTCGCACACA 450817 Query 35514 TCGTCA------CTCTCGAAAAACAGCATCTGCGCCACACCTTCGTTCGCGTACACACGC 35567 |||||| || | ||| |||| ||| || || || ||||| ||| || | |||| Sbjct 450818 TCGTCAGCATCACTTTGGAAGAACAACATTTGTGCTACGCCTTCCCCCGCATAAATACGC 450877 Query 35568 GCCGGCAGGTTGGTAGTGTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCC 35627 || || | ||||| ||||| || ||||| | || || || |||||||| ||||| || Sbjct 450878 GCTGGTAAATTGGTTGTGTTACTAAACTCTAAGGTGACGTGTCCTTCCCATTCAGGCTCA 450937 Query 35628 AGCGGCGTCACGTTGACGATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACC 35687 |||||||| ||||||||||||||||| ||||||||||| || || || | ||| | Sbjct 450938 AGCGGCGTGACGTTGACGATGATACCGCAGCGCGCGTACGTTGATTTGCCAAGACAAATA 450997 Query 35688 ACGAGGACGTTGCGCGGAATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTC 35747 | |||| ||| ||||| ||||| || || | ||| ||||| || || || ||| Sbjct 450998 GTTAATACGTCGCGTGGAATACGGAAATACTCCATCGTACGTGCTAGCGCAAACGAGTTA 451057 Query 35748 GGCGGAAT 35755 ||||| || Sbjct 451058 GGCGGGAT 451065 >seq252826 Length=193385 Score = 91.5 bits (100), Expect = 2e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 120235 TAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGATCCCTGATG 120294 |||||||| |||||||||||||||||||||||||||||||| | |||||||||| | | Sbjct 191954 TAGCTCAGTTGGTAGAGCAACTGACTTGTAATCAGTAGGTCGCCAGTTCGATCCCGGCAG 192013 Query 120295 CCGGCACCAT 120304 ||||||||| Sbjct 192014 TCGGCACCAT 192023 >seq134546 Length=526 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 120227 TGCCGGTATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGAT 120286 |||||| ||||||||| || |||||||||||||||||||||||||||| | ||||||| Sbjct 518 TGCCGGCTTAGCTCAGCAGGCAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGAT 459 Query 120287 CCCTGATGCCGGCA 120300 || | ||||||| Sbjct 458 TCCGGTAGCCGGCA 445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 823157948817120