Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_022096.1
Length=258139
Score E
Sequences producing significant alignments: (Bits) Value
seq249645 156 7e-33
seq252826 91.5 2e-13
seq134546 84.2 4e-11
>seq249645
Length=476466
Score = 156 bits (172), Expect = 7e-33
Identities = 219/308 (71%), Gaps = 6/308 (2%)
Strand=Plus/Plus
Query 35454 GTCACACCCGTCTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATTTCGCAGTCC 35513
|||||||| ||| || || || ||||| || ||||| ||||| | ||||| |
Sbjct 450758 GTCACACCGCGCTGACCTTGATACTTACCACCACGATCTTTGTAACTCGTCTCGCACACA 450817
Query 35514 TCGTCA------CTCTCGAAAAACAGCATCTGCGCCACACCTTCGTTCGCGTACACACGC 35567
|||||| || | ||| |||| ||| || || || ||||| ||| || | ||||
Sbjct 450818 TCGTCAGCATCACTTTGGAAGAACAACATTTGTGCTACGCCTTCCCCCGCATAAATACGC 450877
Query 35568 GCCGGCAGGTTGGTAGTGTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCC 35627
|| || | ||||| ||||| || ||||| | || || || |||||||| ||||| ||
Sbjct 450878 GCTGGTAAATTGGTTGTGTTACTAAACTCTAAGGTGACGTGTCCTTCCCATTCAGGCTCA 450937
Query 35628 AGCGGCGTCACGTTGACGATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACC 35687
|||||||| ||||||||||||||||| ||||||||||| || || || | ||| |
Sbjct 450938 AGCGGCGTGACGTTGACGATGATACCGCAGCGCGCGTACGTTGATTTGCCAAGACAAATA 450997
Query 35688 ACGAGGACGTTGCGCGGAATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTC 35747
| |||| ||| ||||| ||||| || || | ||| ||||| || || || |||
Sbjct 450998 GTTAATACGTCGCGTGGAATACGGAAATACTCCATCGTACGTGCTAGCGCAAACGAGTTA 451057
Query 35748 GGCGGAAT 35755
||||| ||
Sbjct 451058 GGCGGGAT 451065
>seq252826
Length=193385
Score = 91.5 bits (100), Expect = 2e-13
Identities = 62/70 (89%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 120235 TAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGATCCCTGATG 120294
|||||||| |||||||||||||||||||||||||||||||| | |||||||||| | |
Sbjct 191954 TAGCTCAGTTGGTAGAGCAACTGACTTGTAATCAGTAGGTCGCCAGTTCGATCCCGGCAG 192013
Query 120295 CCGGCACCAT 120304
|||||||||
Sbjct 192014 TCGGCACCAT 192023
>seq134546
Length=526
Score = 84.2 bits (92), Expect = 4e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 120227 TGCCGGTATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGAT 120286
|||||| ||||||||| || |||||||||||||||||||||||||||| | |||||||
Sbjct 518 TGCCGGCTTAGCTCAGCAGGCAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGAT 459
Query 120287 CCCTGATGCCGGCA 120300
|| | |||||||
Sbjct 458 TCCGGTAGCCGGCA 445
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 823157948817120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |