Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq213658 136 6e-26 seq134582 123 4e-22 seq146431 118 2e-20 seq27195 111 2e-18 >seq213658 Length=375 Score = 136 bits (150), Expect = 6e-26 Identities = 176/243 (72%), Gaps = 10/243 (4%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || |||||||| || || ||||| |||||| |||||| ||| ||| ||| Sbjct 283 TGTACTTGGTCACAGCCTTGGTGCCTTCAGAGACAGCGTGCTTGGCCAATTCTCCGGGCA 224 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587 || || || || |||||||||||||| || | | ||| || | ||||| |||| Sbjct 223 GGAGGAGACGGACAGCGGTCTGGATCTCCCGAGAGGTGATGGTCGCCCTCTTGTTGTAGT 164 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | | |||||| | | |||| | ||| ||||||| || || ||||| Sbjct 163 GTCGTCTTGGCGGC--------GCGGCGATCCTCTCGCAGGTGTCGTTCACGAATGAGTT 112 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| | ||| | |||| ||||| | || ||||||||| ||||||||||| ||||| Sbjct 111 CATGATGGGCATGGCTTTGCTGGAGGTACCAGTGTCGGGGTGGACCTGCTTGAGGACCTT 52 Query 1485708 GTA 1485710 ||| Sbjct 51 GTA 49 >seq134582 Length=1467 Score = 123 bits (136), Expect = 4e-22 Identities = 172/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| ||||||||||| || || |||||||||| |||||| ||| ||| ||| Sbjct 1043 TGTACTTGGTCACGGCCTTGGTGCCTTCACTGACGGCGTGCTTGGCCAATTCACCGGGCA 1102 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || | ||||| || ||||| || ||| || ||| || |||||||| | Sbjct 1103 ACAAAAGCCTGACGGCTGTTTGGATTTCCCGGCTGGTGATGGTCGAACGCTTGTTGTAGT 1162 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| || | || |||| | ||||||| |||| || |||||||| || ||||| Sbjct 1163 GGGCCAGACGACTGGATTCGGCGGCGATGCGCTCGAACAGATCGTTGACGAAACTGTTCA 1222 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| || | || |||||| || || ||||| | ||| |||| Sbjct 1223 TGATGCTCATGGCTTTGGATGACACACCGGTGTCGGGATGTACTTGCTTCAACACTTTGT 1282 Query 1485710 A 1485710 | Sbjct 1283 A 1283 >seq146431 Length=15796 Score = 118 bits (130), Expect = 2e-20 Identities = 166/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 || |||| ||||| || || |||||| || || || || || ||||| ||| Sbjct 4473 GCTTCGGAGACTTGTACATCTGACATGAATCGAGAAGCGAGATTTTCGAGGACGATTCCG 4532 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || |||||||| |||||||||||||| ||||| |||||||| || ||||| |||| Sbjct 4533 TCAGATGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAGA 4592 Query 796270 GAGACCCAGTG--GACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGG 796327 |||||| | |||| | | || || || || ||||||||||| ||||| | Sbjct 4593 TTTTCCCAGTCACGTCCGTCTTGTGATAGA--TCTACTTCTTCGGCGGTCCAGAAGGATG 4650 Query 796328 CCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 | ||||| || |||||||||||||| ||| || ||||| | || || |||| Sbjct 4651 CTTCGGCTTTCTTGTACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACA 4701 >seq27195 Length=13093 Score = 111 bits (122), Expect = 2e-18 Identities = 159/222 (72%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 796159 ACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCG 796218 ||||| || || |||||| || || || ||||| ||||| ||||| ||| Sbjct 8877 ACTTGTACATCTGACATGAATCGAGAAGCGAGATTCTCTAGAACGATTCCGTCAGATGCG 8818 Query 796219 GCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGCGAGACCCAG 796278 ||||| || ||||||||||| ||||| |||||||| || ||||| |||| ||||| Sbjct 8817 GCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAGATTCTCCCAG 8758 Query 796279 TG--GACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCT 796336 | | |||| | | || || || || ||||||||||| || || || ||||| | Sbjct 8757 TCACGTCCGTCTTGTGATAGA--TCTACTTCTTCGGCGGTCCAGAACGATGCTTCGGCTT 8700 Query 796337 TTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 | |||||||||||||| ||| || ||||| | || || |||| Sbjct 8699 TCTTGTACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACA 8658 Score = 100 bits (110), Expect = 4e-15 Identities = 221/328 (67%), Gaps = 9/328 (3%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTT-GCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 |||||||| || ||| || ||||| | |||| | || |||||||| || || || Sbjct 9210 CCTTCGTCTCGTGAGATTAACTCGTTTGAGAAAGTTAAC-CCAGGCATGAGCCCTCGTTT 9152 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 |||||||| || || | |||||| || || ||||| ||||| || |||||| || || Sbjct 9151 TTTGAGCCAGAAAATCGAACAGAAGCTACCGGAGAAGAAGATACCTTCGACGCACGCGAA 9092 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 |||||| || || || ||||| | || || |||||| |||| ||||| Sbjct 9091 AGCGACGATTCGTTCAGCGAAAGTCTGAGATCCATC------GATCCATGTCATAGCCCA 9038 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 | || || || || | || | || ||||| ||||| ||||| || || |||| Sbjct 9037 TTGAGCTTTCTTAGCGACGCAAGGGATTGTTTCGATTGCGCGGAAGAGATGATCTCTCTC 8978 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 || |||| ||| || || | ||||| || |||| || ||||| || || Sbjct 8977 TTTGTTATCTTTGATGTATGTATCCAGAAGGAGACTATACATCTCAGAATGGATATTCTC 8918 Query 794640 GATGGCGATCTGGAAGCCATA-AAAGCA 794666 || ||||||||||| || || |||||| Sbjct 8917 AATCGCGATCTGGAATCCGTAGAAAGCA 8890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7887820138813092