Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq213658 136 6e-26
seq134582 123 4e-22
seq146431 118 2e-20
seq27195 111 2e-18
>seq213658
Length=375
Score = 136 bits (150), Expect = 6e-26
Identities = 176/243 (72%), Gaps = 10/243 (4%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||| || |||||||| || || ||||| |||||| |||||| ||| ||| |||
Sbjct 283 TGTACTTGGTCACAGCCTTGGTGCCTTCAGAGACAGCGTGCTTGGCCAATTCTCCGGGCA 224
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587
|| || || || |||||||||||||| || | | ||| || | ||||| ||||
Sbjct 223 GGAGGAGACGGACAGCGGTCTGGATCTCCCGAGAGGTGATGGTCGCCCTCTTGTTGTAGT 164
Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647
| | |||||| | | |||| | ||| ||||||| || || |||||
Sbjct 163 GTCGTCTTGGCGGC--------GCGGCGATCCTCTCGCAGGTGTCGTTCACGAATGAGTT 112
Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707
|||||| | ||| | |||| ||||| | || ||||||||| ||||||||||| |||||
Sbjct 111 CATGATGGGCATGGCTTTGCTGGAGGTACCAGTGTCGGGGTGGACCTGCTTGAGGACCTT 52
Query 1485708 GTA 1485710
|||
Sbjct 51 GTA 49
>seq134582
Length=1467
Score = 123 bits (136), Expect = 4e-22
Identities = 172/241 (71%), Gaps = 0/241 (0%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||| ||||||||||| || || |||||||||| |||||| ||| ||| |||
Sbjct 1043 TGTACTTGGTCACGGCCTTGGTGCCTTCACTGACGGCGTGCTTGGCCAATTCACCGGGCA 1102
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| || | ||||| || ||||| || ||| || ||| || |||||||| |
Sbjct 1103 ACAAAAGCCTGACGGCTGTTTGGATTTCCCGGCTGGTGATGGTCGAACGCTTGTTGTAGT 1162
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
| ||||| || | || |||| | ||||||| |||| || |||||||| || |||||
Sbjct 1163 GGGCCAGACGACTGGATTCGGCGGCGATGCGCTCGAACAGATCGTTGACGAAACTGTTCA 1222
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | |||| || | || |||||| || || ||||| | ||| ||||
Sbjct 1223 TGATGCTCATGGCTTTGGATGACACACCGGTGTCGGGATGTACTTGCTTCAACACTTTGT 1282
Query 1485710 A 1485710
|
Sbjct 1283 A 1283
>seq146431
Length=15796
Score = 118 bits (130), Expect = 2e-20
Identities = 166/231 (72%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209
|| |||| ||||| || || |||||| || || || || || ||||| |||
Sbjct 4473 GCTTCGGAGACTTGTACATCTGACATGAATCGAGAAGCGAGATTTTCGAGGACGATTCCG 4532
Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269
|| |||||||| |||||||||||||| ||||| |||||||| || ||||| ||||
Sbjct 4533 TCAGATGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAGA 4592
Query 796270 GAGACCCAGTG--GACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGG 796327
|||||| | |||| | | || || || || ||||||||||| ||||| |
Sbjct 4593 TTTTCCCAGTCACGTCCGTCTTGTGATAGA--TCTACTTCTTCGGCGGTCCAGAAGGATG 4650
Query 796328 CCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378
| ||||| || |||||||||||||| ||| || ||||| | || || ||||
Sbjct 4651 CTTCGGCTTTCTTGTACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACA 4701
>seq27195
Length=13093
Score = 111 bits (122), Expect = 2e-18
Identities = 159/222 (72%), Gaps = 4/222 (2%)
Strand=Plus/Minus
Query 796159 ACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCG 796218
||||| || || |||||| || || || ||||| ||||| ||||| |||
Sbjct 8877 ACTTGTACATCTGACATGAATCGAGAAGCGAGATTCTCTAGAACGATTCCGTCAGATGCG 8818
Query 796219 GCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGCGAGACCCAG 796278
||||| || ||||||||||| ||||| |||||||| || ||||| |||| |||||
Sbjct 8817 GCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAGATTCTCCCAG 8758
Query 796279 TG--GACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCT 796336
| | |||| | | || || || || ||||||||||| || || || ||||| |
Sbjct 8757 TCACGTCCGTCTTGTGATAGA--TCTACTTCTTCGGCGGTCCAGAACGATGCTTCGGCTT 8700
Query 796337 TTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378
| |||||||||||||| ||| || ||||| | || || ||||
Sbjct 8699 TCTTGTACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACA 8658
Score = 100 bits (110), Expect = 4e-15
Identities = 221/328 (67%), Gaps = 9/328 (3%)
Strand=Plus/Minus
Query 794341 CCTTCGTCGCGACTGATCAATTCGTT-GCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399
|||||||| || ||| || ||||| | |||| | || |||||||| || || ||
Sbjct 9210 CCTTCGTCTCGTGAGATTAACTCGTTTGAGAAAGTTAAC-CCAGGCATGAGCCCTCGTTT 9152
Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459
|||||||| || || | |||||| || || ||||| ||||| || |||||| || ||
Sbjct 9151 TTTGAGCCAGAAAATCGAACAGAAGCTACCGGAGAAGAAGATACCTTCGACGCACGCGAA 9092
Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519
|||||| || || || ||||| | || || |||||| |||| |||||
Sbjct 9091 AGCGACGATTCGTTCAGCGAAAGTCTGAGATCCATC------GATCCATGTCATAGCCCA 9038
Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579
| || || || || | || | || ||||| ||||| ||||| || || ||||
Sbjct 9037 TTGAGCTTTCTTAGCGACGCAAGGGATTGTTTCGATTGCGCGGAAGAGATGATCTCTCTC 8978
Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639
|| |||| ||| || || | ||||| || |||| || ||||| || ||
Sbjct 8977 TTTGTTATCTTTGATGTATGTATCCAGAAGGAGACTATACATCTCAGAATGGATATTCTC 8918
Query 794640 GATGGCGATCTGGAAGCCATA-AAAGCA 794666
|| ||||||||||| || || ||||||
Sbjct 8917 AATCGCGATCTGGAATCCGTAGAAAGCA 8890
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7887820138813092
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |