Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_022761.1 Length=146193 Score E Sequences producing significant alignments: (Bits) Value seq206067 125 7e-24 >seq206067 Length=18993 Score = 125 bits (138), Expect = 7e-24 Identities = 537/840 (64%), Gaps = 53/840 (6%) Strand=Plus/Plus Query 36686 CGCATGGATCTTGTTAAGAAAGCATATTGGGTTCTCAGTAATCTTTACATTACTGTAGCT 36745 || || ||||| || || || | || |||| || || || || || || || || Sbjct 11574 CGGATCGATCTCGTCAAAGAATCGTACTGGGCACTTTCGAACCTGTATATGACGGTTGCG 11633 Query 36746 ACACCCACAATGGGGAATGCAGGTAGACCAGATGGTCAGTTAAGCTCGTGTTTCATTGGA 36805 ||||| ||| || |||||| |||| | | | ||||| | || |||||||| | Sbjct 11634 ACACCGACATTGTCGAATGCCGGTAAATCGTACGGTCAACTCTCGTCATGTTTCATCGAT 11693 Query 36806 ACAGTAGAAGATTCCCTAGACAATATCTATGATAATAACAAAGATTCAGCTATGGTGTCT 36865 || || || || || ||| |||||||| || | ||| || | |||| Sbjct 11694 ACGGTCGATGACTCACTACGGGGCATCTATGACTCGAATACGGATGTCGCGACCTTGTCA 11753 Query 36866 AAGTTTGGTGGGGGTATCGGGGTTTACATGGGTAAAATCCGTTCACTC--AACAGTTACA 36923 || || || || ||||| || |||||||| ||||||||||| | | | ||| ||| Sbjct 11754 AAAGGCGGCGGCGGAATCGGTGTCTACATGGGAAAAATCCGTTCGCGCGGATCAG--ACA 11811 Query 36924 TCCGTGGTATGAAAGGTAAGTCTCAA--GGTGTTATCCCTTGGATCAAAGGGCTTGAA-A 36980 || || | || ||| || |||| ||||| || |||||||| ||| ||||| | Sbjct 11812 TCAAAGGATTCAAGGGT--GTATCAAGCGGTGTCATTCCTTGGAT-GAAGCAGTTGAACA 11868 Query 36981 ATACAGCAAATAGTGTAGACCAGCTAGGTCAGCGTAAAGGTGCTATTGCAGTTTACCTAG 37040 ||||||| || || || ||||| || |||| |||| | || || ||||| || | Sbjct 11869 ATACAGCGGTCAGCGTTGATCAGCTCGGCATGCGTCAAGGATCAATCGCCGTTTATCTGG 11928 Query 37041 ACATCTGGCATAAGGATGTTATGGAATTCC----TGCAAATTGGTACTAATAACGGGGAT 37096 | |||||||| |||||| | | ||||||| ||| || | | ||||||||||| Sbjct 11929 ATATCTGGCACAAGGATATCCTCGAATTCCTCGATGCGAAGTTG----AATAACGGGGAC 11984 Query 37097 GAGAGACGTAAAG--CACGTGACGTATTCCCAGGCTTATGTGTACCAGACCTTTTCATGG 37154 ||| | || | ||| ||| ||||| ||||| | | | || || | ||||||| Sbjct 11985 GAGCG--GTTGCGGACACATGATTTATTCACAGGCGTCAGCCTGCCGGATCATTTCATGC 12042 Query 37155 AGAAACTACAGCCAAACCCTGAAACAGGTAAGGTTGATCCAGATGCTAAATGGTATCTGT 37214 | || | | ||| || | ||| | |||||| ||| Sbjct 12043 GG-----ACCGTC-------GAAGCACG--AGG-------------CGACTGGTATTTGT 12075 Query 37215 TTGACCCTCATGAAGTTAGAATGGTGATGGGGTATAGCCTTGAAGACTCCTATGACGAGG 37274 |||| || |||||| | | | ||||||||| | || || ||||| || | ||| || Sbjct 12076 TTGATCCACATGAAATCCGGACGGTGATGGGCTTCAGTCTGGAAGATTCGTTTGATGAAA 12135 Query 37275 AAGAGGGAGCAGGTACTTTCCGAAAGAGATACATGGAG--TGTGTGAACAGTCCTCTGCT 37332 ||| || || | ||| | |||| | ||| || ||||| || || | || Sbjct 12136 CGGAGCAAGGCGGCAGCTTC--ACGGAGAAATATGAAGCATGTGTCAATGAACCCCGTCT 12193 Query 37333 ATCACGTACAGAAGTACTAGTAAAAGATGTGGCTAAGGCTTTCATGGTGTCTCTTATGGA 37392 || || |||||| | | ||| | | || || |||| ||| | | || Sbjct 12194 GAGCCGGACGAAAGTACCGGCCATCGATCTCGTCAAACGTTACATGCGGTCACAGCTCGA 12253 Query 37393 AACAGGAATGCCGTTTATGTTCTTCCGTGATGAAGTAAACAGAAAGAACCCTAATAAACA 37452 ||| || | |||| ||||||||||| |||| |||||| | ||||| || ||||| Sbjct 12254 AACCGGCACACCGTACATGTTCTTCCGCGATGCGGTAAACCGCGCCAACCCAAACAAACA 12313 Query 37453 TGCTGGAATGATCTACTGCTCTAATTTATGTACTGAGATCACCCAAAACATGAGTCCTAC 37512 ||| || |||||||||| || || | ||| | || || | |||||||||||||| || Sbjct 12314 TGCGGGCATGATCTACTCGTCGAACCTCTGTTCAGAAATTATGCAAAACATGAGTCCGAC 12373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466127353044640