Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_022763.1 Length=164297 Score E Sequences producing significant alignments: (Bits) Value seq149378 113 5e-20 seq214244 86.0 7e-12 >seq149378 Length=35185 Score = 113 bits (124), Expect = 5e-20 Identities = 154/207 (74%), Gaps = 10/207 (5%) Strand=Plus/Plus Query 43404 GAATATATGGCAAGTTTAGCTAACCAAACTGTCCAATCGGCAAATACCGTGT--ACTTCA 43461 || |||||||||| | || || ||||| || || | | || |||| | | ||| Sbjct 32785 GACTATATGGCAACACTTGCAAAGCAAACGGTTGAAACCGGTAA--CCGTATTTATATCA 32842 Query 43462 TGATTAAGAACGTTCCGATTGCCCGCGCTCAATCTATCAGCT-CTGAACGTTCATTCGGT 43520 |||||||||||| |||| || |||||||| || | || ||| || ||||||||| Sbjct 32843 TGATTAAGAACGAAGTTATTGGTCGTGCTCAATC-ATTAACTGGTGACCGCTCATTCGGT 32901 Query 43521 ACTCAAGGTGTTTACCAAATTGGTTCAATCATGCCACAGGAACACGTATACTT-ACGT-T 43578 || |||||||| || || ||||||||||||||||||| |||||||||| ||| | || | Sbjct 32902 ACCCAAGGTGTGTATGAACTTGGTTCAATCATGCCACATGAACACGTATTCTTAAAGTAT 32961 Query 43579 ACGAAGGTTCTGTAACGGTAGAACGTT 43605 ||| ||| | ||| | || ||||||| Sbjct 32962 ACG--GGTACGGTATCAGTTGAACGTT 32986 Score = 82.4 bits (90), Expect = 8e-11 Identities = 242/369 (66%), Gaps = 8/369 (2%) Strand=Plus/Plus Query 36755 AAATCTATCGAGTGGGCTATCTTCTACGGTGACGCAGCATTAGCAGCAGAAGCAGACAAC 36814 ||| |||| || |||||||||||||| |||||| | | ||| | || | || || Sbjct 26068 AAAACTATTGAATGGGCTATCTTCTATGGTGACTCTGACTTAACTGC---TGGTGAAAAG 26124 Query 36815 CAAGCTGGTATCGAGTTTGATGGTTTAACGAAGCTTATTGACGAAGCTACTAACGTTATC 36874 | |||| | || |||||||| || ||||||||| || ||| |||| || Sbjct 26125 GGCGATGGTCTGGAATTTGATGGCTTGCAAAAGCTTATT---GATGCTCATAACCACATT 26181 Query 36875 GACCTTAAAGGTGAACGTTTAGATGAGGCTACT-TTAAACAAAGCGGCTGTAATCGTAGG 36933 |||||| |||||| | ||| | | | | | | |||||||| ||||| | | || Sbjct 26182 GACCTTGAAGGTGGAGAATTA-ACGCCACAAGTGCTTAACAAAGCCGCTGTTAAGATTGG 26240 Query 36934 TAAAGGTTATGGACGAGCTACAGATGCGTTTATGCCGATTGGTGTGCAAGCCGATTTTAC 36993 | |||||| || || || ||||| | |||||| |||||||| | || || |||| Sbjct 26241 TGAAGGTTTCGGTGTTGCAACTGATGCTTATATGCCTATTGGTGTTAAGGCTGACTTTAT 26300 Query 36994 TAACAATCTATTAGACCGTCAACGTGTAATTCAACCATCACAAGCTGGTGGATTCTCTAC 37053 ||| | | |||| |||||| | || | || ||| ||||||| | || Sbjct 26301 CAACCAACACTTAGGTGCACAACGTATTATGCTTCCCGGTCAAACTGGTGGTATGGAAAC 26360 Query 37054 TGGATTCTCTATCAACCAGTTCTTATCTACTCGTGGTGCTATCAACTTACACGGTTCTAC 37113 ||| || || ||| |||||||| | |||||| || || || || ||||| || Sbjct 26361 TGGTTTAGACATTGACCGTTTCTTATCAGCACGTGGTAACATTAAGTTGCATGGTTCAAC 26420 Query 37114 AATCATGGA 37122 || ||||| Sbjct 26421 TATTATGGA 26429 >seq214244 Length=1107 Score = 86.0 bits (94), Expect = 7e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 17512 ATTACTAATTTAGGAAGCTCTCGTGGTTCATTTAATATTTGTTCCTTCGCCTGTTCAATA 17571 || ||||||||||| || | | || ||| || ||||| || || |||||| Sbjct 75 ATGACTAATTTAGGTAGTTTTTTAGGAGATCTTAGTACTTGTTTTTTTGCTAATTCAATG 134 Query 17572 TGGTTAAGGTATAAATGAACGTCACCGCCGTTGTAAATCAAGTCTCCTACTTCTAACCCA 17631 || ||| |||| ||| || ||||| || | | | || ||||| |||||||| || Sbjct 135 TGATTATTATATAGATGGACATCACCTCCTGTCCATAAAAATTCTCCAACTTCTAAATCA 194 Query 17632 CATTCTAAAGCGATTAAATGTAAGAGTAATGCGTAACTAGCAATATTAAAAGCTAGTCCT 17691 |||| | || || | ||| | |||| ||| |||||||| |||||||||| || ||| Sbjct 195 CATTGTTGTGCTATCATATGAATAAGTATTGCATAACTAGCTATATTAAAAGGTAATCCA 254 Query 17692 AAAAATCCGTCATTAGAACG 17711 | |||| | ||| |||||| Sbjct 255 AGAAATACATCACAAGAACG 274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 523866637216160