Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_022763.1
Length=164297
Score E
Sequences producing significant alignments: (Bits) Value
seq149378 113 5e-20
seq214244 86.0 7e-12
>seq149378
Length=35185
Score = 113 bits (124), Expect = 5e-20
Identities = 154/207 (74%), Gaps = 10/207 (5%)
Strand=Plus/Plus
Query 43404 GAATATATGGCAAGTTTAGCTAACCAAACTGTCCAATCGGCAAATACCGTGT--ACTTCA 43461
|| |||||||||| | || || ||||| || || | | || |||| | | |||
Sbjct 32785 GACTATATGGCAACACTTGCAAAGCAAACGGTTGAAACCGGTAA--CCGTATTTATATCA 32842
Query 43462 TGATTAAGAACGTTCCGATTGCCCGCGCTCAATCTATCAGCT-CTGAACGTTCATTCGGT 43520
|||||||||||| |||| || |||||||| || | || ||| || |||||||||
Sbjct 32843 TGATTAAGAACGAAGTTATTGGTCGTGCTCAATC-ATTAACTGGTGACCGCTCATTCGGT 32901
Query 43521 ACTCAAGGTGTTTACCAAATTGGTTCAATCATGCCACAGGAACACGTATACTT-ACGT-T 43578
|| |||||||| || || ||||||||||||||||||| |||||||||| ||| | || |
Sbjct 32902 ACCCAAGGTGTGTATGAACTTGGTTCAATCATGCCACATGAACACGTATTCTTAAAGTAT 32961
Query 43579 ACGAAGGTTCTGTAACGGTAGAACGTT 43605
||| ||| | ||| | || |||||||
Sbjct 32962 ACG--GGTACGGTATCAGTTGAACGTT 32986
Score = 82.4 bits (90), Expect = 8e-11
Identities = 242/369 (66%), Gaps = 8/369 (2%)
Strand=Plus/Plus
Query 36755 AAATCTATCGAGTGGGCTATCTTCTACGGTGACGCAGCATTAGCAGCAGAAGCAGACAAC 36814
||| |||| || |||||||||||||| |||||| | | ||| | || | || ||
Sbjct 26068 AAAACTATTGAATGGGCTATCTTCTATGGTGACTCTGACTTAACTGC---TGGTGAAAAG 26124
Query 36815 CAAGCTGGTATCGAGTTTGATGGTTTAACGAAGCTTATTGACGAAGCTACTAACGTTATC 36874
| |||| | || |||||||| || ||||||||| || ||| |||| ||
Sbjct 26125 GGCGATGGTCTGGAATTTGATGGCTTGCAAAAGCTTATT---GATGCTCATAACCACATT 26181
Query 36875 GACCTTAAAGGTGAACGTTTAGATGAGGCTACT-TTAAACAAAGCGGCTGTAATCGTAGG 36933
|||||| |||||| | ||| | | | | | | |||||||| ||||| | | ||
Sbjct 26182 GACCTTGAAGGTGGAGAATTA-ACGCCACAAGTGCTTAACAAAGCCGCTGTTAAGATTGG 26240
Query 36934 TAAAGGTTATGGACGAGCTACAGATGCGTTTATGCCGATTGGTGTGCAAGCCGATTTTAC 36993
| |||||| || || || ||||| | |||||| |||||||| | || || ||||
Sbjct 26241 TGAAGGTTTCGGTGTTGCAACTGATGCTTATATGCCTATTGGTGTTAAGGCTGACTTTAT 26300
Query 36994 TAACAATCTATTAGACCGTCAACGTGTAATTCAACCATCACAAGCTGGTGGATTCTCTAC 37053
||| | | |||| |||||| | || | || ||| ||||||| | ||
Sbjct 26301 CAACCAACACTTAGGTGCACAACGTATTATGCTTCCCGGTCAAACTGGTGGTATGGAAAC 26360
Query 37054 TGGATTCTCTATCAACCAGTTCTTATCTACTCGTGGTGCTATCAACTTACACGGTTCTAC 37113
||| || || ||| |||||||| | |||||| || || || || ||||| ||
Sbjct 26361 TGGTTTAGACATTGACCGTTTCTTATCAGCACGTGGTAACATTAAGTTGCATGGTTCAAC 26420
Query 37114 AATCATGGA 37122
|| |||||
Sbjct 26421 TATTATGGA 26429
>seq214244
Length=1107
Score = 86.0 bits (94), Expect = 7e-12
Identities = 139/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 17512 ATTACTAATTTAGGAAGCTCTCGTGGTTCATTTAATATTTGTTCCTTCGCCTGTTCAATA 17571
|| ||||||||||| || | | || ||| || ||||| || || ||||||
Sbjct 75 ATGACTAATTTAGGTAGTTTTTTAGGAGATCTTAGTACTTGTTTTTTTGCTAATTCAATG 134
Query 17572 TGGTTAAGGTATAAATGAACGTCACCGCCGTTGTAAATCAAGTCTCCTACTTCTAACCCA 17631
|| ||| |||| ||| || ||||| || | | | || ||||| |||||||| ||
Sbjct 135 TGATTATTATATAGATGGACATCACCTCCTGTCCATAAAAATTCTCCAACTTCTAAATCA 194
Query 17632 CATTCTAAAGCGATTAAATGTAAGAGTAATGCGTAACTAGCAATATTAAAAGCTAGTCCT 17691
|||| | || || | ||| | |||| ||| |||||||| |||||||||| || |||
Sbjct 195 CATTGTTGTGCTATCATATGAATAAGTATTGCATAACTAGCTATATTAAAAGGTAATCCA 254
Query 17692 AAAAATCCGTCATTAGAACG 17711
| |||| | ||| ||||||
Sbjct 255 AGAAATACATCACAAGAACG 274
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 523866637216160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |