Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_022767.1
Length=81656
Score E
Sequences producing significant alignments: (Bits) Value
seq206067 127 1e-24
>seq206067
Length=18993
Score = 127 bits (140), Expect = 1e-24
Identities = 411/628 (65%), Gaps = 34/628 (5%)
Strand=Plus/Minus
Query 64087 TGAGGATCGAATAAATACCAATCTCCACGCGATTCAACTTTCTCCATGAATAAATCAGGG 64146
|| ||||| || |||||||| || || || | ||| || || |||||| ||| ||
Sbjct 12085 TGTGGATCAAACAAATACCAGTCGCCTCGTGCTTCGACGGTCCGCATGAAATGATCCGGC 12026
Query 64147 ATACAAACACCGGTAAAAATGTCACGAGCGCGTTTTCTTTCATCACCTGTATTTAA--TC 64204
| | || || || || | ||| | | || | || || || |||| || ||
Sbjct 12025 AGGCTGACGCCTGTGAATAAATCATGTGTCCGCAACCGCTCGTCCCCGTTATTCAACTTC 11966
Query 64205 GAAGGTCAAGGAATGAGAAAATGTCTTGATGCCATACGTCTAAATAGACCGCCATTGCAC 64264
| | || |||||| || || || | ||||| | || | ||| || || |||| |
Sbjct 11965 GCA--TCGAGGAATTCGAGGATATCCTTGTGCCAGATATCCAGATAAACGGCGATTGATC 11908
Query 64265 CTTGACGTTGACCTAACTGATCCACACTGATAGCAGTTTCGTTAACAAGTTTAGTCCACG 64324
||||||| || | |||||| || |||| || || | ||| | | || |||| |
Sbjct 11907 CTTGACGCATGCCGAGCTGATCAACGCTGACCGCTGTATTGTTCAACTGCTTCATCCAAG 11848
Query 64325 GTACTGTTCCACCAC---AAACACCTTTGAATCCTTTGATATCTGAACCTAATGAACGTA 64381
| | | |||| | | ||||| |||||||||||||| ||||| || ||||| |
Sbjct 11847 GAA---TGACACCGCTTGATACACCCTTGAATCCTTTGATGTCTGATCCGCGCGAACGGA 11791
Query 64382 CGTGGCCCATGTAAATTCCGATACCGCCGCCG--TTTTTACTTAATTGAGCGATAT---T 64436
| |||||||| | ||||| ||||||||| |||| || || |||| || |
Sbjct 11790 TTTTTCCCATGTAGACACCGATTCCGCCGCCGCCTTTTGAC--AAGGTCGCGACATCCGT 11733
Query 64437 AT-CAAGTGTTCCATAGATAGCTTTAAGA---TCATCGCCCATTGTATCGATAAAGCAGC 64492
|| | ||| ||||||| | || |||||| || |||||||| || ||
Sbjct 11732 ATTCGAGT----CATAGATGCCCCGTAGTGAGTCATCGACC---GTATCGATGAAACATG 11680
Query 64493 TTGATAACTGTCCATAGCTCTTACCAGCATTAGCTAAAGTCGGTGTAGCAACGGTCATAT 64552
|| | || || || ||||| ||||| | || |||||||| ||||| |||||||
Sbjct 11679 ACGAGAGTTGACCGTACGATTTACCGGCATTCGACAATGTCGGTGTCGCAACCGTCATAT 11620
Query 64553 ACAGGCTAGATAAGGCCCAATAAGCTTCTTGGACTAATGCGACACGTTGTTCAGCTTT-- 64610
||||| | || | ||||| || | ||||| ||| | ||| || | | ||||
Sbjct 11619 ACAGGTTCGAAAGTGCCCAGTACGATTCTTTGACGAGATCGATCCGACGGT---CTTTCG 11563
Query 64611 -TTCTTTAACCATCAACGTCATTGCAATAATCATAAAACGTTCTTGTGGCAATTCGTACT 64669
|||| | |||||||||||| || || ||||| ||||| || || |||| |||||||
Sbjct 11562 GTTCTGTCTGCATCAACGTCATCGCGATGATCATGAAACGCTCCTGCGGCAGTTCGTACA 11503
Query 64670 TATTTTTAACATGGTCAGTAGCTAAGTA 64697
|| || || || || ||||||||
Sbjct 11502 ATTTCTTGACGTGATCGCGCGCTAAGTA 11475
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 260323796440636
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |