Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_022767.1 Length=81656 Score E Sequences producing significant alignments: (Bits) Value seq206067 127 1e-24 >seq206067 Length=18993 Score = 127 bits (140), Expect = 1e-24 Identities = 411/628 (65%), Gaps = 34/628 (5%) Strand=Plus/Minus Query 64087 TGAGGATCGAATAAATACCAATCTCCACGCGATTCAACTTTCTCCATGAATAAATCAGGG 64146 || ||||| || |||||||| || || || | ||| || || |||||| ||| || Sbjct 12085 TGTGGATCAAACAAATACCAGTCGCCTCGTGCTTCGACGGTCCGCATGAAATGATCCGGC 12026 Query 64147 ATACAAACACCGGTAAAAATGTCACGAGCGCGTTTTCTTTCATCACCTGTATTTAA--TC 64204 | | || || || || | ||| | | || | || || || |||| || || Sbjct 12025 AGGCTGACGCCTGTGAATAAATCATGTGTCCGCAACCGCTCGTCCCCGTTATTCAACTTC 11966 Query 64205 GAAGGTCAAGGAATGAGAAAATGTCTTGATGCCATACGTCTAAATAGACCGCCATTGCAC 64264 | | || |||||| || || || | ||||| | || | ||| || || |||| | Sbjct 11965 GCA--TCGAGGAATTCGAGGATATCCTTGTGCCAGATATCCAGATAAACGGCGATTGATC 11908 Query 64265 CTTGACGTTGACCTAACTGATCCACACTGATAGCAGTTTCGTTAACAAGTTTAGTCCACG 64324 ||||||| || | |||||| || |||| || || | ||| | | || |||| | Sbjct 11907 CTTGACGCATGCCGAGCTGATCAACGCTGACCGCTGTATTGTTCAACTGCTTCATCCAAG 11848 Query 64325 GTACTGTTCCACCAC---AAACACCTTTGAATCCTTTGATATCTGAACCTAATGAACGTA 64381 | | | |||| | | ||||| |||||||||||||| ||||| || ||||| | Sbjct 11847 GAA---TGACACCGCTTGATACACCCTTGAATCCTTTGATGTCTGATCCGCGCGAACGGA 11791 Query 64382 CGTGGCCCATGTAAATTCCGATACCGCCGCCG--TTTTTACTTAATTGAGCGATAT---T 64436 | |||||||| | ||||| ||||||||| |||| || || |||| || | Sbjct 11790 TTTTTCCCATGTAGACACCGATTCCGCCGCCGCCTTTTGAC--AAGGTCGCGACATCCGT 11733 Query 64437 AT-CAAGTGTTCCATAGATAGCTTTAAGA---TCATCGCCCATTGTATCGATAAAGCAGC 64492 || | ||| ||||||| | || |||||| || |||||||| || || Sbjct 11732 ATTCGAGT----CATAGATGCCCCGTAGTGAGTCATCGACC---GTATCGATGAAACATG 11680 Query 64493 TTGATAACTGTCCATAGCTCTTACCAGCATTAGCTAAAGTCGGTGTAGCAACGGTCATAT 64552 || | || || || ||||| ||||| | || |||||||| ||||| ||||||| Sbjct 11679 ACGAGAGTTGACCGTACGATTTACCGGCATTCGACAATGTCGGTGTCGCAACCGTCATAT 11620 Query 64553 ACAGGCTAGATAAGGCCCAATAAGCTTCTTGGACTAATGCGACACGTTGTTCAGCTTT-- 64610 ||||| | || | ||||| || | ||||| ||| | ||| || | | |||| Sbjct 11619 ACAGGTTCGAAAGTGCCCAGTACGATTCTTTGACGAGATCGATCCGACGGT---CTTTCG 11563 Query 64611 -TTCTTTAACCATCAACGTCATTGCAATAATCATAAAACGTTCTTGTGGCAATTCGTACT 64669 |||| | |||||||||||| || || ||||| ||||| || || |||| ||||||| Sbjct 11562 GTTCTGTCTGCATCAACGTCATCGCGATGATCATGAAACGCTCCTGCGGCAGTTCGTACA 11503 Query 64670 TATTTTTAACATGGTCAGTAGCTAAGTA 64697 || || || || || |||||||| Sbjct 11502 ATTTCTTGACGTGATCGCGCGCTAAGTA 11475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 260323796440636