Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_022769.1 Length=165238 Score E Sequences producing significant alignments: (Bits) Value seq149378 105 7e-18 >seq149378 Length=35185 Score = 105 bits (116), Expect = 7e-18 Identities = 148/203 (73%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 42382 GAATATATGGCAAGTTTAGCTAACCAAACTGTCCAATCGGCAAATACCGTGT--ACTTCA 42439 || |||||||||| | || || ||||| || || | | || |||| | | ||| Sbjct 32785 GACTATATGGCAACACTTGCAAAGCAAACGGTTGAAACCGGTAA--CCGTATTTATATCA 32842 Query 42440 TGATTAAGAACGTTCCGATTGCCCGCGCTCAATCCATCAGCT-CTGAACGTTCATTCGGT 42498 |||||||||||| |||| || ||||||| ||| | || ||| || ||||||||| Sbjct 32843 TGATTAAGAACGAAGTTATTGGTCGTGCTCAAT-CATTAACTGGTGACCGCTCATTCGGT 32901 Query 42499 ACTCAAGGTGTTTACCAAATTGGTTCCATCATGCCACAAGAACACGTATACTTACGTTAT 42558 || |||||||| || || ||||||| ||||||||||| |||||||||| |||| ||| Sbjct 32902 ACCCAAGGTGTGTATGAACTTGGTTCAATCATGCCACATGAACACGTATTCTTAAAGTAT 32961 Query 42559 GAAGGTTCTGTAACGGTAGAACG 42581 ||| | ||| | || ||||| Sbjct 32962 ACGGGTACGGTATCAGTTGAACG 32984 Score = 86.0 bits (94), Expect = 7e-12 Identities = 196/288 (68%), Gaps = 14/288 (5%) Strand=Plus/Minus Query 25818 GTAGGTGTTGACCATCTTCGTAAAATACCATATTGAGATGAAGACATAGACTCCATCGCA 25877 || || || |||||||||| || |||||||| | ||| || || | || || | || Sbjct 20159 GTTGGGGTCGACCATCTTCTTATCATACCATACTTAGAAGATGATAGTGATTCTAATGCT 20100 Query 25878 GAGATTTCCGCCGAACTATTTACACGGTCATACTCATCCAGTGATAGATAATCGATATCG 25937 || ||||| || | | ||||| ||||| || ||||| | || ||||||| || Sbjct 20099 GATATTTCAGCAGTAGGATTTAGGCGGTCGTATTCATCTAAACTAAGGTAATCGAGGTCA 20040 Query 25938 ACACCCTCTACCGCAGCGCCCTTACTAGAAGAACGGAACAGCATGAAGCT---ATTTCTA 25994 | ||| || | | |||||||||||| ||||| || || || || | ||||| Sbjct 20039 ATACCTTCCATGCTACTACCCTTACTAGAACTACGGA--AGTAT-AACCTAGAACTTCTA 19983 Query 25995 AtttttttCTTTTCTAACGAGTCAAT---CTTAGGGTC-AGAAATAGTAGCATAATAACC 26050 ||| |||| ||||| || ||| | |||| || | ||| | ||||||||||| Sbjct 19982 ATTGACTTCTGGTCTAATGAATCATTATACTTA---TCTATTAATCCT-GCATAATAACC 19927 Query 26051 TTTCTCAAGTAATGGGTTAATACGCGTCGTTACAAAGTCCTTCATTTG 26098 || | || || |||||||| | | | ||||||||||||||||| Sbjct 19926 GTTTTGAAACTCAGGATTAATACGTGACTTAACAAAGTCCTTCATTTG 19879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526867778754240