Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_022769.1
Length=165238
Score E
Sequences producing significant alignments: (Bits) Value
seq149378 105 7e-18
>seq149378
Length=35185
Score = 105 bits (116), Expect = 7e-18
Identities = 148/203 (73%), Gaps = 6/203 (3%)
Strand=Plus/Plus
Query 42382 GAATATATGGCAAGTTTAGCTAACCAAACTGTCCAATCGGCAAATACCGTGT--ACTTCA 42439
|| |||||||||| | || || ||||| || || | | || |||| | | |||
Sbjct 32785 GACTATATGGCAACACTTGCAAAGCAAACGGTTGAAACCGGTAA--CCGTATTTATATCA 32842
Query 42440 TGATTAAGAACGTTCCGATTGCCCGCGCTCAATCCATCAGCT-CTGAACGTTCATTCGGT 42498
|||||||||||| |||| || ||||||| ||| | || ||| || |||||||||
Sbjct 32843 TGATTAAGAACGAAGTTATTGGTCGTGCTCAAT-CATTAACTGGTGACCGCTCATTCGGT 32901
Query 42499 ACTCAAGGTGTTTACCAAATTGGTTCCATCATGCCACAAGAACACGTATACTTACGTTAT 42558
|| |||||||| || || ||||||| ||||||||||| |||||||||| |||| |||
Sbjct 32902 ACCCAAGGTGTGTATGAACTTGGTTCAATCATGCCACATGAACACGTATTCTTAAAGTAT 32961
Query 42559 GAAGGTTCTGTAACGGTAGAACG 42581
||| | ||| | || |||||
Sbjct 32962 ACGGGTACGGTATCAGTTGAACG 32984
Score = 86.0 bits (94), Expect = 7e-12
Identities = 196/288 (68%), Gaps = 14/288 (5%)
Strand=Plus/Minus
Query 25818 GTAGGTGTTGACCATCTTCGTAAAATACCATATTGAGATGAAGACATAGACTCCATCGCA 25877
|| || || |||||||||| || |||||||| | ||| || || | || || | ||
Sbjct 20159 GTTGGGGTCGACCATCTTCTTATCATACCATACTTAGAAGATGATAGTGATTCTAATGCT 20100
Query 25878 GAGATTTCCGCCGAACTATTTACACGGTCATACTCATCCAGTGATAGATAATCGATATCG 25937
|| ||||| || | | ||||| ||||| || ||||| | || ||||||| ||
Sbjct 20099 GATATTTCAGCAGTAGGATTTAGGCGGTCGTATTCATCTAAACTAAGGTAATCGAGGTCA 20040
Query 25938 ACACCCTCTACCGCAGCGCCCTTACTAGAAGAACGGAACAGCATGAAGCT---ATTTCTA 25994
| ||| || | | |||||||||||| ||||| || || || || | |||||
Sbjct 20039 ATACCTTCCATGCTACTACCCTTACTAGAACTACGGA--AGTAT-AACCTAGAACTTCTA 19983
Query 25995 AtttttttCTTTTCTAACGAGTCAAT---CTTAGGGTC-AGAAATAGTAGCATAATAACC 26050
||| |||| ||||| || ||| | |||| || | ||| | |||||||||||
Sbjct 19982 ATTGACTTCTGGTCTAATGAATCATTATACTTA---TCTATTAATCCT-GCATAATAACC 19927
Query 26051 TTTCTCAAGTAATGGGTTAATACGCGTCGTTACAAAGTCCTTCATTTG 26098
|| | || || |||||||| | | | |||||||||||||||||
Sbjct 19926 GTTTTGAAACTCAGGATTAATACGTGACTTAACAAAGTCCTTCATTTG 19879
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 526867778754240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |