Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_022771.1
Length=156648
Score E
Sequences producing significant alignments: (Bits) Value
seq158858 190 2e-43
seq82942 95.1 1e-14
>seq158858
Length=235449
Score = 190 bits (210), Expect = 2e-43
Identities = 284/401 (71%), Gaps = 13/401 (3%)
Strand=Plus/Plus
Query 140485 GCAAAGACAGAACTTACAACTACACTAGAAAGAATGATCTA---TGC--CAACACCTGCA 140539
|| || |||| | | |||||| | |||||||| ||| || ||| ||| | |
Sbjct 216160 GCTAAAACAGCATTAACAACTCAATTAGAAAGACAGATATACTTTGCTACAAAA-----A 216214
Query 140540 AGATGGGGGTGTTTGGCTGCTTTGAAGTAACCATAGGTATGGGTGGTAGCGAGCGGGTAG 140599
||||||| || ||||| || |||||||| || || || | ||| | || || || |
Sbjct 216215 AGATGGGTGTCTTTGGTTGTTTTGAAGTCACTATTGGATTTAATGGAAATGAACGAGTCG 216274
Query 140600 ATTATATCACTTACGACACAAAAGGGATATGGCGCTGCTATGAAATCAAGGTGTCAGTAG 140659
||||||| ||||||||||| || || || ||||| ||||||||||| || || ||| | |
Sbjct 216275 ATTATATGACTTACGACACTAAGGGTATTTGGCGATGCTATGAAATTAAAGTTTCACTTG 216334
Query 140660 CCGACTTTAGGAGTACAGCTAAGAAGACCTTCTGTGGTCATTATAACTACTATGTGATGC 140719
| || ||||| |||| ||| ||||| || || || || |||| ||| |||| ||| ||||
Sbjct 216335 CTGATTTTAGAAGTAAAGCAAAGAAAACTTTTTGCGGACATTTTAATTACTTTGTAATGC 216394
Query 140720 CTAAGGAGCTTTATGATAAAGTAAAAGATGAGGTACCTGCACATATAGGAGTTTATATTG 140779
|||| || | | ||| || || |||||||| | || | ||| |||| |||||| ||
Sbjct 216395 CTAAAGAATTATTTGAGAAGGTTAAAGATGAAATCCCATCTCATGTAGGTGTTTATGTTA 216454
Query 140780 ATGGTAGATACTCCATTAAGAGAGCTAAGAAGCAAGAGTTATCCGTAGACGAGCAGGTAC 140839
| | || | |||||| ||| || |||||| || ||| || || ||| | |||
Sbjct 216455 ACG---GAATGTGTGTTAAGAAAGCCAAAAAGCAAAAGCTATTAGTGGAAGAGAAAGTAT 216511
Query 140840 TTAAAGACTCTCTTATTCGATCTCTATATAGGGAAGCGGAC 140880
| ||||| || | |||||||| ||| || || |||||
Sbjct 216512 TAAAAGATTCATTGATTCGATCATTATCAAGAGAGTCGGAC 216552
>seq82942
Length=47844
Score = 95.1 bits (104), Expect = 1e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 123450 TACGATTCACAACTACATCGACATGGATCACATGATCCTTCGTAAAGGTGCTATTTCCGC 123509
||||||||||||||||||||| | || || ||||| || ||||||||||| ||||| ||
Sbjct 35788 TACGATTCACAACTACATCGATCTCGAGCAGATGATTCTGCGTAAAGGTGCGATTTCAGC 35729
Query 123510 CCGGGAAGGTGAACGAGTGATCATCCCAATCAACATGAGAGATGGTAGCATCATTGCAGA 123569
| | |||||| | ||||| || || |||||| | || ||| | || | |
Sbjct 35728 GCAAGCCGGTGAAGTCGCTATCATTCCGATGAACATGCGCGACGGTTCACTGATCGTCAA 35669
Query 123570 AGGAACAGGTAACCCAGATTGGAACTTCTCCGGTCCTCATGGAGCTGGTCGAGTAATGAG 123629
||||| ||| || || || ||||||| || | || || || || || || | |||
Sbjct 35668 AGGAAAAGGCAATCCGGACTGGAACTATTCGGCACCACACGGGGCAGGACGGATCATGTC 35609
Query 123630 CCGATCTAAAGC 123641
||| || |||||
Sbjct 35608 CCGCTCGAAAGC 35597
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499471598295040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |