Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_022771.1 Length=156648 Score E Sequences producing significant alignments: (Bits) Value seq158858 190 2e-43 seq82942 95.1 1e-14 >seq158858 Length=235449 Score = 190 bits (210), Expect = 2e-43 Identities = 284/401 (71%), Gaps = 13/401 (3%) Strand=Plus/Plus Query 140485 GCAAAGACAGAACTTACAACTACACTAGAAAGAATGATCTA---TGC--CAACACCTGCA 140539 || || |||| | | |||||| | |||||||| ||| || ||| ||| | | Sbjct 216160 GCTAAAACAGCATTAACAACTCAATTAGAAAGACAGATATACTTTGCTACAAAA-----A 216214 Query 140540 AGATGGGGGTGTTTGGCTGCTTTGAAGTAACCATAGGTATGGGTGGTAGCGAGCGGGTAG 140599 ||||||| || ||||| || |||||||| || || || | ||| | || || || | Sbjct 216215 AGATGGGTGTCTTTGGTTGTTTTGAAGTCACTATTGGATTTAATGGAAATGAACGAGTCG 216274 Query 140600 ATTATATCACTTACGACACAAAAGGGATATGGCGCTGCTATGAAATCAAGGTGTCAGTAG 140659 ||||||| ||||||||||| || || || ||||| ||||||||||| || || ||| | | Sbjct 216275 ATTATATGACTTACGACACTAAGGGTATTTGGCGATGCTATGAAATTAAAGTTTCACTTG 216334 Query 140660 CCGACTTTAGGAGTACAGCTAAGAAGACCTTCTGTGGTCATTATAACTACTATGTGATGC 140719 | || ||||| |||| ||| ||||| || || || || |||| ||| |||| ||| |||| Sbjct 216335 CTGATTTTAGAAGTAAAGCAAAGAAAACTTTTTGCGGACATTTTAATTACTTTGTAATGC 216394 Query 140720 CTAAGGAGCTTTATGATAAAGTAAAAGATGAGGTACCTGCACATATAGGAGTTTATATTG 140779 |||| || | | ||| || || |||||||| | || | ||| |||| |||||| || Sbjct 216395 CTAAAGAATTATTTGAGAAGGTTAAAGATGAAATCCCATCTCATGTAGGTGTTTATGTTA 216454 Query 140780 ATGGTAGATACTCCATTAAGAGAGCTAAGAAGCAAGAGTTATCCGTAGACGAGCAGGTAC 140839 | | || | |||||| ||| || |||||| || ||| || || ||| | ||| Sbjct 216455 ACG---GAATGTGTGTTAAGAAAGCCAAAAAGCAAAAGCTATTAGTGGAAGAGAAAGTAT 216511 Query 140840 TTAAAGACTCTCTTATTCGATCTCTATATAGGGAAGCGGAC 140880 | ||||| || | |||||||| ||| || || ||||| Sbjct 216512 TAAAAGATTCATTGATTCGATCATTATCAAGAGAGTCGGAC 216552 >seq82942 Length=47844 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 123450 TACGATTCACAACTACATCGACATGGATCACATGATCCTTCGTAAAGGTGCTATTTCCGC 123509 ||||||||||||||||||||| | || || ||||| || ||||||||||| ||||| || Sbjct 35788 TACGATTCACAACTACATCGATCTCGAGCAGATGATTCTGCGTAAAGGTGCGATTTCAGC 35729 Query 123510 CCGGGAAGGTGAACGAGTGATCATCCCAATCAACATGAGAGATGGTAGCATCATTGCAGA 123569 | | |||||| | ||||| || || |||||| | || ||| | || | | Sbjct 35728 GCAAGCCGGTGAAGTCGCTATCATTCCGATGAACATGCGCGACGGTTCACTGATCGTCAA 35669 Query 123570 AGGAACAGGTAACCCAGATTGGAACTTCTCCGGTCCTCATGGAGCTGGTCGAGTAATGAG 123629 ||||| ||| || || || ||||||| || | || || || || || || | ||| Sbjct 35668 AGGAAAAGGCAATCCGGACTGGAACTATTCGGCACCACACGGGGCAGGACGGATCATGTC 35609 Query 123630 CCGATCTAAAGC 123641 ||| || ||||| Sbjct 35608 CCGCTCGAAAGC 35597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499471598295040