Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_022914.1 Length=43394 Score E Sequences producing significant alignments: (Bits) Value seq66721 122 2e-23 >seq66721 Length=235 Score = 122 bits (134), Expect = 2e-23 Identities = 94/109 (86%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 39807 CAACCTCCTATCCGAAATCTCACAACACATCGGAAACAAACCATCGAGCAGCACGTATAA 39866 |||||| ||||| |||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 26 CAACCTACTATCTGAAATCTCCCAACACATCGGCAACAAACCATCGAGCAGCACGTATAA 85 Query 39867 GTATTTTAGAGCGAAGTTGGAT-AGTATTGGGATTAAGGAGGGTGAGTA 39914 |||||||||||| ||||| ||| ||| | ||| ||||| | ||||| Sbjct 86 GTATTTTAGAGCTAAGTTAGATGAGT-TGAATATTGAGGAGAGCGAGTA 133 Score = 100 bits (110), Expect = 8e-17 Identities = 82/100 (82%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 40860 TGAATAAACTAATAAAACAAGTAGAACAATGGAGTAAAGATAAAAACCTAGACAGAGGTA 40919 ||||| | |||| |||||||| ||||| ||| || |||||| || ||| ||||| Sbjct 136 TGAATGAGTTAATTAAACAAGTTGAACAGTGGTCAAAGGATAAAGGATTACACAAAGGTA 195 Query 40920 ATCCAGATAGACAAGCATTGAAATTCTATGAAGAGGCAGG 40959 || |||||||||||||||||||||||||||||||||| || Sbjct 196 ATTCAGATAGACAAGCATTGAAATTCTATGAAGAGGCTGG 235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138298934387616