Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_022920.1
Length=139738
Score E
Sequences producing significant alignments: (Bits) Value
seq158858 185 8e-42
seq111679 116 3e-21
>seq158858
Length=235449
Score = 185 bits (204), Expect = 8e-42
Identities = 420/625 (67%), Gaps = 14/625 (2%)
Strand=Plus/Plus
Query 133803 TATTACAATGCAGACGTAGAGAAGGAAATGGTTGTTGCTTCTATCCCTGCTACTGAGCAC 133862
||||||||||| || | || |||||| | || | | || || || |||||||| ||
Sbjct 214279 TATTACAATGCGAACATTGAAAAGGAATTAGTAGGAACATCAATACCAGCTACTGAACAT 214338
Query 133863 TCAGTAATGTGCGCAAATGGTAATTATGAAACCATGGATGAGTATGAAACATATAAACGT 133922
||||| |||| ||||| || || | | ||||| | |||| || || |||
Sbjct 214339 TCAGTTATGTCAGCAAACACAGATGCAGATAGCCGTGATGAATTCGAAATGTACAAGCGT 214398
Query 133923 ATGTTAACAGAAATATATCCAACAGGCATTTTCTCTATTGTATCTGATACTTGGGACTTT 133982
| |||| || ||||||| | |||| | ||| | | || || || || | || ||
Sbjct 214399 CTTATAACTGAGGTATATCCTAAAGGCTTCTTCAGTGTAGTTTCAGACACGTATGATTTC 214458
Query 133983 TGGG--GTAATATGACTAAAACTTTACCTAGATTAAAGGATATTATTATGGAACGTGATG 134040
|||| ||| || || || ||| ||| | | ||| | || |||||||||||||
Sbjct 214459 TGGGCAGTAGTAGGAGAAATTCTT--CCTCGTCTTAAGAAGGAAATCATGGAACGTGATG 214516
Query 134041 GTAAAGTAGTAATCAGACCTGATAGTGGAGACCCTGTTAAAATTATTTGCGGAGACCCTG 134100
|| | || || | ||||||||||||||||||||| ||| || || |||| |
Sbjct 214517 GTCGTATGGTTATTCGTCCTGATAGTGGAGACCCTGTTCTTATTCTTACTGGTAACCCAG 214576
Query 134101 ATGCAGATACTGAATATGAACGTAAAGGTGCAGTAGAAGTACTTTGGGATACATTTGGAG 134160
| ||| | || ||| |||||||||||| | | || | | ||||||| ||||| |
Sbjct 214577 AAGCAAAAACAGAACTTGAACGTAAAGGACTAATTGAGGCTTTATGGGATATCTTTGGTG 214636
Query 134161 GTACTGAAACTGAAAAAGGGTACAAAGTATTAGATGAACACGTAGGATTAATTTATGGAG 134220
| || ||||| || || || ||| |||||||| || | || ||| ||||| |
Sbjct 214637 GAACAATTACTGAGAAGGGTTATAAACTATTAGATACTCATATTGGTGCAATCTATGGTG 214696
Query 134221 ACTCTATTAACTATGAACGTGCTCAACAAAT--TTGTGAAGGATTAAAAGAAAAAGGTTT 134278
||||||||| ||| ||||| || || ||| |||| ||| |||||||||| ||
Sbjct 214697 ACTCTATTACTCTTGAGCGTGCAAAAGCTATTGTTGAGAAG--TTAGAAGAAAAAGGCTT 214754
Query 134279 TGCAAGTATTAATGTTGTATTAGGTGTAGGTAGTTTCTCTTACCAATTTAATACTCGTGA 134338
||| | || ||||| || || || || || ||| ||||| | | ||||| ||
Sbjct 214755 TGCTTCAACAAACGTTGTTTTCGGCGTGGGATCTTATACTTTCCAATATCAGACTCGCGA 214814
Query 134339 TACTCACGGGTTTGCAATCAAAGCAACGTATGCTAAGATTAAAAATGAAGAAAAAC--TT 134396
| ||| |||||||| || ||||| || |||||| | ||||| |||| ||| ||
Sbjct 214815 TTCTCTAGGGTTTGCTATGAAAGCTACATATGCT---GTAGTAAATGGAGAAGAACGTTT 214871
Query 134397 A-TCTATAAAAATCCTAAAACAGAT 134420
| | | || |||| |||||||||
Sbjct 214872 ATTGTTCAAGGATCCAAAAACAGAT 214896
>seq111679
Length=1463
Score = 116 bits (128), Expect = 3e-21
Identities = 213/312 (68%), Gaps = 0/312 (0%)
Strand=Plus/Plus
Query 19459 ATCATAGTCAAATTCAACTTGAGCAAAGCGGTCTAATGTAGCTCCGTCTAATTGTTGTCT 19518
|||||||| ||| || | | |||| | ||| |||||||| | |||| | || |
Sbjct 1143 ATCATAGTTAAAGTCTAAAAGTACAAACCTGTCCAATGTAGCAGCATCTAGTATATGACG 1202
Query 19519 ACCTACATAAATGTGGTCTGCTCCTGTTCCCATAGTATTACCTGCTGACACAACTCTGAA 19578
||| ||| ||||| ||||| | || | |||||| | || | ||| || | ||
Sbjct 1203 TCCTGTATACTGCTGGTCAGCTCCCCTACCTGTTGTATTAGCAGCAGCCACTACAGTAAA 1262
Query 19579 ATCTTCATGAGCTGTTACACGTCCAATAGGGAAGTCAAAGTATTTATTTGCAATAGCTGA 19638
||| ||| ||| | ||| |||| || | |||||| ||| ||||| || |
Sbjct 1263 ATCAGGATGTGCTTGAGCTTTACCATTAGGAAAATTAAAGTACCGATTAGCAATTGCAGC 1322
Query 19639 ATTAAGAATTAATAGTACTTCAGGAATAGATGCATCCATTTCATCTAAGAAGAATAACCC 19698
||| || || | || | || || | || |||||||||||||||||||| |||| ||
Sbjct 1323 ATTCAGTATAACTAAAGCCTCTGGTACCGAAGCATCCATTTCATCTAAGAAAAATATACC 1382
Query 19699 ACCTTTTGTAAATGCTTTATAGAATTGAGTTTCATGAAACTTACCATTTGCATCAATAAA 19758
|| || ||||| |||| || || ||||| || ||| | ||||| || ||||||||
Sbjct 1383 CCCCTTAGTAAAAGCTTGGTAAAACTGAGTCTCCTGATATGTACCAGAAGCGTCAATAAA 1442
Query 19759 TCCTGTTAATTT 19770
||| ||||||||
Sbjct 1443 TCCAGTTAATTT 1454
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445540351314240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |