Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_023007.1 Length=168876 Score E Sequences producing significant alignments: (Bits) Value seq158858 259 5e-64 >seq158858 Length=235449 Score = 259 bits (286), Expect = 5e-64 Identities = 614/923 (67%), Gaps = 30/923 (3%) Strand=Plus/Plus Query 88880 CAGTATCCAGAAAATACACAAGTAATCTATTCTACATTCACACCACGTAGCAATAAGTAT 88939 || || |||||| ||| ||||||| || ||||| || || |||||||||||| || Sbjct 213655 CAATACCCAGAAGGTACGGAAGTAATTTACTCTACGTTTACTCCACGTAGCAATCGCTAC 213714 Query 88940 TTCCCTGTGGCAGATAAAGTTGTATTCTTCGGATTACAATCATTCATTAAAAAGTTTCTG 88999 | || ||||| ||||| ||| | ||||| | ||||| || |||| || | ||| Sbjct 213715 ATGCCATATGCAGACAAAGTAGTAGTGTTCGGTATTCAATCTTTTGTTAAGAAATATCTA 213774 Query 89000 ATTGACCACTTTAATACATACTTCTTTAGACGT--AGTAAAACTGATGTGATTGCTGAGT 89057 | || |||| || | |||||||| || | | || ||||| | || || | Sbjct 213775 GTCGATTACTTCGATGAGCATTTCTTTAGCCGACCACTTGAA--GATGTAGTAGCAGAAT 213832 Query 89058 ACGAACGATACATTCATTATACTCTAGGTGTAGAGAATGTAGACACAA----CACACATC 89113 | | || ||||| | | ||| || | || ||| || || || |||||||| Sbjct 213833 ATGTTCGTTACATGAAACACACTTTA--TTTATTGAAG--AGCCAAAAGCTGCACACATC 213888 Query 89114 AAAGAGTTATGGGAATTAGGACATTTACCGATTGAAATTAAAGCGTTAAAAGAGGGAACT 89173 | || | | ||||| || | ||| | || | ||||| || ||| |||||| Sbjct 213889 ATTGAACTTCACAAGTTAGGCTATATGCCGTTACAAGTAAAAGCACTACCAGAAGGAACT 213948 Query 89174 TTAGCACCAATTAAAACACCAGTATTGACGATTGAAAATACA-GATGACAATTTCT---- 89228 |||| |||||||| ||||| || || |||| || ||| || | | || | Sbjct 213949 CTAGCTCCAATTAAGGTGCCAGTTTTAACTGTTGAGAACACACGACCAGATCTTGTATCT 214008 Query 89229 ----TCTGGGTTACAAACTACATTGAAACTATTATCTCAAATGAGATTTGGTTACCAATG 89284 ||||| |||| || || ||||||| || || || ||||| ||||||||||||||| Sbjct 214009 ACTTTCTGGATTACTAATTATCTTGAAACAATCATGTCGAATGAAATTTGGTTACCAATG 214068 Query 89285 ACATCTGCAACAATTGCATATGAGTATCGTAAACTATTAGATGAGTTTGCGTTAAGAACT 89344 ||| |||||| || | ||| |||| || || || || ||| | || | | ||| Sbjct 214069 ACAAGTGCAACTGTTTCTTATCAGTACCGAAAGTTACTAATTGATATGGCTATGAAAACA 214128 Query 89345 GTAGGAAGTACAGATGGAGTAGAGTTTCAAGGACACGATTTCTCAATGCGTGGAATGTCT 89404 ||||| | || | | ||| |||||||| |||||||||||| ||||| |||||| Sbjct 214129 GTAGGTCATGCAAACGATGTACCGTTTCAAGCACACGATTTCTCTATGCGCGGAATGAGC 214188 Query 89405 TCATTTGATGCATCTAAAGCTTCTGGAGCAGGTCACTTGTTGAGTTTTACAGGTACAGAT 89464 || || | ||| || ||||||||| ||||| || || ||| |||||| Sbjct 214189 AGCTTAGAGTCTGCTATGGCGAGTGGAGCAGGACACTTATTATCATTCGTAGGAACAGAT 214248 Query 89465 ACAATTCCTGCAATCATGTATCATGAAGAGTTTTACAAAGCAAATATTGAGAATGAATTG 89524 || |||| || || |||| ||| | | |||||| || || ||||| || ||||| Sbjct 214249 ACGGTTCCAGCTATTGCTTATCTTGAGCATTATTACAATGCGAACATTGAAAAGGAATTA 214308 Query 89525 GTAGGAACTTCCATTCCTGCGACTGAACACAGTGTAATGTGTG------CATATGGAGAT 89578 |||||||| || || || || |||||||| || |||| | || ||| |||| Sbjct 214309 GTAGGAACATCAATACCAGCTACTGAACATTCAGTTATGTCAGCAAACACAGATGCAGAT 214368 Query 89579 A---CAAATGAATTTGAGTTATTCAAACGATTAATCACACAAATCTATCCAAACGGATTC 89635 | ||||||| || | | ||| || | || || | | ||||| || || ||| Sbjct 214369 AGCCGTGATGAATTCGAAATGTACAAGCGTCTTATAACTGAGGTATATCCTAAAGGCTTC 214428 Query 89636 TTCTCTGTAGTTTCTGATACATGGGATTTCTGGAAGGTTGTTGGAGAGTATCTGCCAAAA 89695 ||| ||||||||| || || | ||||||||| || || ||||| ||| || Sbjct 214429 TTCAGTGTAGTTTCAGACACGTATGATTTCTGGGCAGTAGTAGGAGAAATTCTTCCTCGT 214488 Query 89696 TTAAAAGATAAAATTATGGAACGTGATGGTCGAGTAGTAATCCGTCCAGATAGTGGTGAC 89755 | || | |||| ||||||||||||||||| | || || ||||| |||||||| ||| Sbjct 214489 CTTAAGAAGGAAATCATGGAACGTGATGGTCGTATGGTTATTCGTCCTGATAGTGGAGAC 214548 Query 89756 CCTGTTGAAATCCTTTGTGGTAA 89778 |||||| || ||| |||||| Sbjct 214549 CCTGTTCTTATTCTTACTGGTAA 214571 Score = 246 bits (272), Expect = 3e-60 Identities = 279/374 (75%), Gaps = 0/374 (0%) Strand=Plus/Minus Query 107159 ATACCCCATCCACGCTCTCTTAAAAGTTGTGCTGTGAACTTAACTGCTAAAGCTTCTGCT 107218 || |||||||| |||||||||| | ||| || ||| |||| | ||||||||| ||| Sbjct 160352 ATTCCCCATCCGCGCTCTCTTAGTAATTGAGCAACGAATTTAATAGATAAAGCTTCAGCT 160293 Query 107219 TTACGATATCTGTCTCCACCACTTAGAGAGTAGCAGATTTCAATTCCGATAGACTTCATA 107278 || |||||| |||||| || ||||| |||||||||| |||||||| || Sbjct 160292 TTTTCATATCTTGGACCACCAGATAATGAGTAACAGATTTCAACACCGATAGATTTTCGG 160233 Query 107279 TTACCGTTTCCAGTTCCATCTCCACAATGCCAAGCATTACGGTTTGTAGGGATACCTTGA 107338 || ||||| ||| ||||| |||||||||||||||||||| | || ||||||||| Sbjct 160232 TTTCCGTTACCACCACCATCACCACAATGCCAAGCATTACGATCAACCGGAATACCTTGA 160173 Query 107339 ACAACTTCGAAATCATCAACTGCAAAATGGAATGAAGTAGCATTACTGTTTGTAATCATG 107398 | |||||||| |||||| ||||| || ||||||||| | ||| | ||| |||||| Sbjct 160172 ATAACTTCGATATCATCTACTGCGAAGTGGAATGAAACCTCGTTAGTATTTCCGATCATG 160113 Query 107399 TACTGCACCTCGTTATTCGCACTTGCATCATTGTAAGTATTGTGGATAGTAATGTATTCT 107458 || | |||||||| || ||| |||||||| ||||| || || | |||||||| ||| Sbjct 160112 TAATTTACCTCGTTCTTAGCAGGCGCATCATTATAAGTGTTATGCACTGTAATGTACTCT 160053 Query 107459 GCTGTCATAGTGTTAGGACACTTTAAGCTGTACTTACTTGAATCCACCAATTTTTGTCTT 107518 ||| |||||| | ||||||||| | ||| || |||| | |||| | |||||| | Sbjct 160052 GCTTTCATAGAATAAGGACACTTGATTGGGTATTTGCTTGTAGCCACAAGATTTTGTTTA 159993 Query 107519 ACTGAAATAGCCAT 107532 |||||||| ||||| Sbjct 159992 ACTGAAATGGCCAT 159979 Score = 176 bits (194), Expect = 5e-39 Identities = 238/329 (72%), Gaps = 2/329 (1%) Strand=Plus/Plus Query 90049 AGGATTAATCGAATGTCTCTGGAATATTTTCGGAGGTACAATCACTGAGAAAGGTTATCG 90108 |||| |||| || | | ||| |||| || || || ||||| |||||||| |||||| Sbjct 214602 AGGACTAATTGAGGCTTTATGGGATATCTTTGGTGGAACAATTACTGAGAAGGGTTATAA 214661 Query 90109 TTTACTAGATACACATATCGGTGCGATTTATGGAGATTCTATCACTCTAGAACGTGCTAG 90168 || ||||||| ||||| ||||| || ||||| || ||||| ||||| || ||||| | Sbjct 214662 ACTATTAGATACTCATATTGGTGCAATCTATGGTGACTCTATTACTCTTGAGCGTGCAAA 214721 Query 90169 AAAGATTGTAGTAAGATTAGAGCGTAAAGGATTTGCATCTCTGAATGTTGTATTCGGTAT 90228 | ||||| | | ||||| ||||| ||||| || || ||||| ||||| | Sbjct 214722 AGCTATTGTTGAGAAGTTAGAAGAAAAAGGCTTTGCTTCAACAAACGTTGTTTTCGGCGT 214781 Query 90229 CGGTAGTTTCACATACCAATATAACACTCGTGACACATTTGGATTTGC-ATGTAAGGCTA 90287 || || || | ||||||| | ||||| || | | || ||||| ||| ||| ||| Sbjct 214782 GGGATCTTATACTTTCCAATATCAGACTCGCGATTCTCTAGGGTTTGCTATGAAAG-CTA 214840 Query 90288 CATATGCAGTTGTTGATGGTGAAGAGAGAATGCTGTTTAAAGACCCGAAAACAGATGACG 90347 ||||||| || || |||| ||||| | | |||| || || || ||||||||||| | Sbjct 214841 CATATGCTGTAGTAAATGGAGAAGAACGTTTATTGTTCAAGGATCCAAAAACAGATGATG 214900 Query 90348 GAACTAAGAAGTCTCAACGTGGTCGAGTA 90376 |||||||||| ||||||||||| || ||| Sbjct 214901 GAACTAAGAAATCTCAACGTGGCCGCGTA 214929 Score = 168 bits (186), Expect = 7e-37 Identities = 199/263 (76%), Gaps = 5/263 (2%) Strand=Plus/Plus Query 75037 AAAAGGTGATTGAATGTTTGAGTTTATTGGAACAGGAAGTGCGTTTAACACGAAACTAGG 75096 |||||| || |||| || | |||||||||| ||| ||||| |||||||| ||| ||| Sbjct 193840 AAAAGGAGAACAAATGCTTAATTTTATTGGAAGAGGTAGTGCATTTAACACAAAAGAAGG 193899 Query 75097 AAACAACGGTGCATTCATTAAACAAGGAA-ATAAGTTTTTCATGATTGATTGTGGTAGTG 75155 ||||||| | || | |||||| ||||| || | || || | |||||||| |||||| Sbjct 193900 AAACAACTGCGCTTATATTAAA-AAGGATGATCATTTGTTTTTAATTGATTGCGGTAGTT 193958 Query 75156 CAACATTCCATCGTATCATGGAAACAGAATTACTAGATGGAGTCGAAGAGATTTA-TGTT 75214 |||||||| || | || ||| | |||||||||||| ||| |||| | | | ||| Sbjct 193959 CAACATTCGGCCGCTTAATTGAATCTAAATTACTAGATGAAGT-GAAGCAAGTAACTGTA 194017 Query 75215 ATGATGACACATACACATCCAGACCATGTAGGGTCATTAGGAGATTTGATTTTCTATGGC 75274 | | || ||| |||||| ||||||||||| ||| |||| ||||| ||||||||||| Sbjct 194018 CTACTCACTCATTTACATCCTGACCATGTAGGTTCACTAGGCGATTTAATTTTCTATGGG 194077 Query 75275 TACTACTCTATGGGAAATGTTAA 75297 || || || |||||||| ||||| Sbjct 194078 TATTATTCAATGGGAAA-GTTAA 194099 Score = 84.2 bits (92), Expect = 2e-11 Identities = 125/175 (71%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 48111 TGATAGAAAACACAATATGTCAACATTGAAGGATGCTTCACCAGAAAAAGAATTACGTCA 48170 |||||||||||||||| | ||||| |||||| |||||||||| || || | || Sbjct 195013 TGATAGAAAACACAATTTCAGTACATTACGTGATGCTACACCAGAAAAGAAAGTAAGACA 195072 Query 48171 AGCTAATGAGACATTAGAA-TACTTCATTCCATTATTTAAAGAAGGTCGTAAGCGTTACC 48229 ||| | ||||| | |||| |||||| | ||||| ||||| |||| | |||||||| | Sbjct 195073 AGCAATCGAGAC-TGAGAAGTACTTCTTCCCATTCTTTAAGGAAGCTATGAAGCGTTATC 195131 Query 48230 CAGAATTTGCAAGATTCTTCCATTCTGCTAAAACAACTCTCATGCCACAAATTAT 48284 || || | | |||| |||||||| ||| || ||| ||||| |||| Sbjct 195132 CAAGATACTCTGCTTATTTCCTATCTGCTAAGACAGCTATCAAACCACATCTTAT 195186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 538470491735680