Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_023007.1
Length=168876
Score E
Sequences producing significant alignments: (Bits) Value
seq158858 259 5e-64
>seq158858
Length=235449
Score = 259 bits (286), Expect = 5e-64
Identities = 614/923 (67%), Gaps = 30/923 (3%)
Strand=Plus/Plus
Query 88880 CAGTATCCAGAAAATACACAAGTAATCTATTCTACATTCACACCACGTAGCAATAAGTAT 88939
|| || |||||| ||| ||||||| || ||||| || || |||||||||||| ||
Sbjct 213655 CAATACCCAGAAGGTACGGAAGTAATTTACTCTACGTTTACTCCACGTAGCAATCGCTAC 213714
Query 88940 TTCCCTGTGGCAGATAAAGTTGTATTCTTCGGATTACAATCATTCATTAAAAAGTTTCTG 88999
| || ||||| ||||| ||| | ||||| | ||||| || |||| || | |||
Sbjct 213715 ATGCCATATGCAGACAAAGTAGTAGTGTTCGGTATTCAATCTTTTGTTAAGAAATATCTA 213774
Query 89000 ATTGACCACTTTAATACATACTTCTTTAGACGT--AGTAAAACTGATGTGATTGCTGAGT 89057
| || |||| || | |||||||| || | | || ||||| | || || |
Sbjct 213775 GTCGATTACTTCGATGAGCATTTCTTTAGCCGACCACTTGAA--GATGTAGTAGCAGAAT 213832
Query 89058 ACGAACGATACATTCATTATACTCTAGGTGTAGAGAATGTAGACACAA----CACACATC 89113
| | || ||||| | | ||| || | || ||| || || || ||||||||
Sbjct 213833 ATGTTCGTTACATGAAACACACTTTA--TTTATTGAAG--AGCCAAAAGCTGCACACATC 213888
Query 89114 AAAGAGTTATGGGAATTAGGACATTTACCGATTGAAATTAAAGCGTTAAAAGAGGGAACT 89173
| || | | ||||| || | ||| | || | ||||| || ||| ||||||
Sbjct 213889 ATTGAACTTCACAAGTTAGGCTATATGCCGTTACAAGTAAAAGCACTACCAGAAGGAACT 213948
Query 89174 TTAGCACCAATTAAAACACCAGTATTGACGATTGAAAATACA-GATGACAATTTCT---- 89228
|||| |||||||| ||||| || || |||| || ||| || | | || |
Sbjct 213949 CTAGCTCCAATTAAGGTGCCAGTTTTAACTGTTGAGAACACACGACCAGATCTTGTATCT 214008
Query 89229 ----TCTGGGTTACAAACTACATTGAAACTATTATCTCAAATGAGATTTGGTTACCAATG 89284
||||| |||| || || ||||||| || || || ||||| |||||||||||||||
Sbjct 214009 ACTTTCTGGATTACTAATTATCTTGAAACAATCATGTCGAATGAAATTTGGTTACCAATG 214068
Query 89285 ACATCTGCAACAATTGCATATGAGTATCGTAAACTATTAGATGAGTTTGCGTTAAGAACT 89344
||| |||||| || | ||| |||| || || || || ||| | || | | |||
Sbjct 214069 ACAAGTGCAACTGTTTCTTATCAGTACCGAAAGTTACTAATTGATATGGCTATGAAAACA 214128
Query 89345 GTAGGAAGTACAGATGGAGTAGAGTTTCAAGGACACGATTTCTCAATGCGTGGAATGTCT 89404
||||| | || | | ||| |||||||| |||||||||||| ||||| ||||||
Sbjct 214129 GTAGGTCATGCAAACGATGTACCGTTTCAAGCACACGATTTCTCTATGCGCGGAATGAGC 214188
Query 89405 TCATTTGATGCATCTAAAGCTTCTGGAGCAGGTCACTTGTTGAGTTTTACAGGTACAGAT 89464
|| || | ||| || ||||||||| ||||| || || ||| ||||||
Sbjct 214189 AGCTTAGAGTCTGCTATGGCGAGTGGAGCAGGACACTTATTATCATTCGTAGGAACAGAT 214248
Query 89465 ACAATTCCTGCAATCATGTATCATGAAGAGTTTTACAAAGCAAATATTGAGAATGAATTG 89524
|| |||| || || |||| ||| | | |||||| || || ||||| || |||||
Sbjct 214249 ACGGTTCCAGCTATTGCTTATCTTGAGCATTATTACAATGCGAACATTGAAAAGGAATTA 214308
Query 89525 GTAGGAACTTCCATTCCTGCGACTGAACACAGTGTAATGTGTG------CATATGGAGAT 89578
|||||||| || || || || |||||||| || |||| | || ||| ||||
Sbjct 214309 GTAGGAACATCAATACCAGCTACTGAACATTCAGTTATGTCAGCAAACACAGATGCAGAT 214368
Query 89579 A---CAAATGAATTTGAGTTATTCAAACGATTAATCACACAAATCTATCCAAACGGATTC 89635
| ||||||| || | | ||| || | || || | | ||||| || || |||
Sbjct 214369 AGCCGTGATGAATTCGAAATGTACAAGCGTCTTATAACTGAGGTATATCCTAAAGGCTTC 214428
Query 89636 TTCTCTGTAGTTTCTGATACATGGGATTTCTGGAAGGTTGTTGGAGAGTATCTGCCAAAA 89695
||| ||||||||| || || | ||||||||| || || ||||| ||| ||
Sbjct 214429 TTCAGTGTAGTTTCAGACACGTATGATTTCTGGGCAGTAGTAGGAGAAATTCTTCCTCGT 214488
Query 89696 TTAAAAGATAAAATTATGGAACGTGATGGTCGAGTAGTAATCCGTCCAGATAGTGGTGAC 89755
| || | |||| ||||||||||||||||| | || || ||||| |||||||| |||
Sbjct 214489 CTTAAGAAGGAAATCATGGAACGTGATGGTCGTATGGTTATTCGTCCTGATAGTGGAGAC 214548
Query 89756 CCTGTTGAAATCCTTTGTGGTAA 89778
|||||| || ||| ||||||
Sbjct 214549 CCTGTTCTTATTCTTACTGGTAA 214571
Score = 246 bits (272), Expect = 3e-60
Identities = 279/374 (75%), Gaps = 0/374 (0%)
Strand=Plus/Minus
Query 107159 ATACCCCATCCACGCTCTCTTAAAAGTTGTGCTGTGAACTTAACTGCTAAAGCTTCTGCT 107218
|| |||||||| |||||||||| | ||| || ||| |||| | ||||||||| |||
Sbjct 160352 ATTCCCCATCCGCGCTCTCTTAGTAATTGAGCAACGAATTTAATAGATAAAGCTTCAGCT 160293
Query 107219 TTACGATATCTGTCTCCACCACTTAGAGAGTAGCAGATTTCAATTCCGATAGACTTCATA 107278
|| |||||| |||||| || ||||| |||||||||| |||||||| ||
Sbjct 160292 TTTTCATATCTTGGACCACCAGATAATGAGTAACAGATTTCAACACCGATAGATTTTCGG 160233
Query 107279 TTACCGTTTCCAGTTCCATCTCCACAATGCCAAGCATTACGGTTTGTAGGGATACCTTGA 107338
|| ||||| ||| ||||| |||||||||||||||||||| | || |||||||||
Sbjct 160232 TTTCCGTTACCACCACCATCACCACAATGCCAAGCATTACGATCAACCGGAATACCTTGA 160173
Query 107339 ACAACTTCGAAATCATCAACTGCAAAATGGAATGAAGTAGCATTACTGTTTGTAATCATG 107398
| |||||||| |||||| ||||| || ||||||||| | ||| | ||| ||||||
Sbjct 160172 ATAACTTCGATATCATCTACTGCGAAGTGGAATGAAACCTCGTTAGTATTTCCGATCATG 160113
Query 107399 TACTGCACCTCGTTATTCGCACTTGCATCATTGTAAGTATTGTGGATAGTAATGTATTCT 107458
|| | |||||||| || ||| |||||||| ||||| || || | |||||||| |||
Sbjct 160112 TAATTTACCTCGTTCTTAGCAGGCGCATCATTATAAGTGTTATGCACTGTAATGTACTCT 160053
Query 107459 GCTGTCATAGTGTTAGGACACTTTAAGCTGTACTTACTTGAATCCACCAATTTTTGTCTT 107518
||| |||||| | ||||||||| | ||| || |||| | |||| | |||||| |
Sbjct 160052 GCTTTCATAGAATAAGGACACTTGATTGGGTATTTGCTTGTAGCCACAAGATTTTGTTTA 159993
Query 107519 ACTGAAATAGCCAT 107532
|||||||| |||||
Sbjct 159992 ACTGAAATGGCCAT 159979
Score = 176 bits (194), Expect = 5e-39
Identities = 238/329 (72%), Gaps = 2/329 (1%)
Strand=Plus/Plus
Query 90049 AGGATTAATCGAATGTCTCTGGAATATTTTCGGAGGTACAATCACTGAGAAAGGTTATCG 90108
|||| |||| || | | ||| |||| || || || ||||| |||||||| ||||||
Sbjct 214602 AGGACTAATTGAGGCTTTATGGGATATCTTTGGTGGAACAATTACTGAGAAGGGTTATAA 214661
Query 90109 TTTACTAGATACACATATCGGTGCGATTTATGGAGATTCTATCACTCTAGAACGTGCTAG 90168
|| ||||||| ||||| ||||| || ||||| || ||||| ||||| || ||||| |
Sbjct 214662 ACTATTAGATACTCATATTGGTGCAATCTATGGTGACTCTATTACTCTTGAGCGTGCAAA 214721
Query 90169 AAAGATTGTAGTAAGATTAGAGCGTAAAGGATTTGCATCTCTGAATGTTGTATTCGGTAT 90228
| ||||| | | ||||| ||||| ||||| || || ||||| ||||| |
Sbjct 214722 AGCTATTGTTGAGAAGTTAGAAGAAAAAGGCTTTGCTTCAACAAACGTTGTTTTCGGCGT 214781
Query 90229 CGGTAGTTTCACATACCAATATAACACTCGTGACACATTTGGATTTGC-ATGTAAGGCTA 90287
|| || || | ||||||| | ||||| || | | || ||||| ||| ||| |||
Sbjct 214782 GGGATCTTATACTTTCCAATATCAGACTCGCGATTCTCTAGGGTTTGCTATGAAAG-CTA 214840
Query 90288 CATATGCAGTTGTTGATGGTGAAGAGAGAATGCTGTTTAAAGACCCGAAAACAGATGACG 90347
||||||| || || |||| ||||| | | |||| || || || ||||||||||| |
Sbjct 214841 CATATGCTGTAGTAAATGGAGAAGAACGTTTATTGTTCAAGGATCCAAAAACAGATGATG 214900
Query 90348 GAACTAAGAAGTCTCAACGTGGTCGAGTA 90376
|||||||||| ||||||||||| || |||
Sbjct 214901 GAACTAAGAAATCTCAACGTGGCCGCGTA 214929
Score = 168 bits (186), Expect = 7e-37
Identities = 199/263 (76%), Gaps = 5/263 (2%)
Strand=Plus/Plus
Query 75037 AAAAGGTGATTGAATGTTTGAGTTTATTGGAACAGGAAGTGCGTTTAACACGAAACTAGG 75096
|||||| || |||| || | |||||||||| ||| ||||| |||||||| ||| |||
Sbjct 193840 AAAAGGAGAACAAATGCTTAATTTTATTGGAAGAGGTAGTGCATTTAACACAAAAGAAGG 193899
Query 75097 AAACAACGGTGCATTCATTAAACAAGGAA-ATAAGTTTTTCATGATTGATTGTGGTAGTG 75155
||||||| | || | |||||| ||||| || | || || | |||||||| ||||||
Sbjct 193900 AAACAACTGCGCTTATATTAAA-AAGGATGATCATTTGTTTTTAATTGATTGCGGTAGTT 193958
Query 75156 CAACATTCCATCGTATCATGGAAACAGAATTACTAGATGGAGTCGAAGAGATTTA-TGTT 75214
|||||||| || | || ||| | |||||||||||| ||| |||| | | | |||
Sbjct 193959 CAACATTCGGCCGCTTAATTGAATCTAAATTACTAGATGAAGT-GAAGCAAGTAACTGTA 194017
Query 75215 ATGATGACACATACACATCCAGACCATGTAGGGTCATTAGGAGATTTGATTTTCTATGGC 75274
| | || ||| |||||| ||||||||||| ||| |||| ||||| |||||||||||
Sbjct 194018 CTACTCACTCATTTACATCCTGACCATGTAGGTTCACTAGGCGATTTAATTTTCTATGGG 194077
Query 75275 TACTACTCTATGGGAAATGTTAA 75297
|| || || |||||||| |||||
Sbjct 194078 TATTATTCAATGGGAAA-GTTAA 194099
Score = 84.2 bits (92), Expect = 2e-11
Identities = 125/175 (71%), Gaps = 2/175 (1%)
Strand=Plus/Plus
Query 48111 TGATAGAAAACACAATATGTCAACATTGAAGGATGCTTCACCAGAAAAAGAATTACGTCA 48170
|||||||||||||||| | ||||| |||||| |||||||||| || || | ||
Sbjct 195013 TGATAGAAAACACAATTTCAGTACATTACGTGATGCTACACCAGAAAAGAAAGTAAGACA 195072
Query 48171 AGCTAATGAGACATTAGAA-TACTTCATTCCATTATTTAAAGAAGGTCGTAAGCGTTACC 48229
||| | ||||| | |||| |||||| | ||||| ||||| |||| | |||||||| |
Sbjct 195073 AGCAATCGAGAC-TGAGAAGTACTTCTTCCCATTCTTTAAGGAAGCTATGAAGCGTTATC 195131
Query 48230 CAGAATTTGCAAGATTCTTCCATTCTGCTAAAACAACTCTCATGCCACAAATTAT 48284
|| || | | |||| |||||||| ||| || ||| ||||| ||||
Sbjct 195132 CAAGATACTCTGCTTATTTCCTATCTGCTAAGACAGCTATCAAACCACATCTTAT 195186
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 538470491735680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |