Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq54724 113 4e-20
seq117562 107 2e-18
seq153189 98.7 8e-16
seq210337 93.3 3e-14
seq50902 93.3 3e-14
seq26661 86.0 5e-12
seq214945 82.4 6e-11
>seq54724
Length=7877
Score = 113 bits (124), Expect = 4e-20
Identities = 155/214 (72%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
||||| || |||||||| || || || || |||||||||||| |||| ||| |||
Sbjct 1875 ATGCAGATCTTTGTCAAGACCTTGACCGGTAAAACCATTACCCTCGAGGTTGAGAGCT-C 1933
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
|| || ||| | | || ||| ||||| || |||||||| | || ||| ||
Sbjct 1934 AGACACCATCGACAACGTGAAAGCCAAGATCCAGGACAAAGAAGGTATCCCTCCGGACCA 1993
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
||||||| | || | ||| || || || || ||||||| || ||| |||| ||||||||
Sbjct 1994 GCAGAGATTGATCTTTGCCGGAAAGCAACTCGAGGACGGCAGAACTCTGGCCGACTACAA 2053
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768
||||| || |||||||| | ||| ||||||||
Sbjct 2054 TATTCAGAAAGAGTCTACTCTTCACTTGGTGTTG 2087
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| || ||||| |||||| | || || || || || ||| |||| ||| |
Sbjct 1419 ATGCAGATCTTTGTGAAAACTCTCACCGGAAAGACTATCACCCTCGAGGTGGAAAGTTCT 1478
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
||||| ||| | | || || |||||| ||||| ||||| | || |||||||
Sbjct 1479 GATACGATCGACAACGTTAAGGCTAAGATTCAGGATAAGGAAGGAATTCCTCCGGATCAG 1538
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
|||||| | || | || || || ||| |||| || | | || ||||||| ||||||
Sbjct 1539 CAGAGATTGATCTTCGCCGGAAAGCAGTTGGAAGATGGCCGTACCTTGGCGGATTACAAC 1598
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764
|| || ||||| || ||| | ||| ||||
Sbjct 1599 ATCCAGAAGGAATCCACGCTTCACTTGGT 1627
>seq117562
Length=2070
Score = 107 bits (118), Expect = 2e-18
Identities = 144/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAA-CGGAGGCTGG 107614
|||||||| || ||||| ||||| || || || ||||||||| ||||| || | |||
Sbjct 1231 ATGCAAATCTTCGTCAAGACTTTGACCGGAAAGACCATTACCCTCGAAGTCGAAAGCTCA 1290
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
|||||| | | | || ||| ||||| || || ||||| | || ||||||
Sbjct 1291 -GATACTATTGATAACGTCAAAGCTAAGATCCAGGACAAGGAAGGTATTCCTCCGGATCA 1349
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
||| |||||||| | || ||||| ||||| || |||| | || ||||||| |||||
Sbjct 1350 GCAAAGACTTATCTTCGCCGGTAAGCAGCTTGAAGACGGAAGGACTCTGGCGGATTACAA 1409
Query 107735 CATTCAAAAGGAGTCTAC 107752
||| || |||||||||||
Sbjct 1410 CATCCAGAAGGAGTCTAC 1427
Score = 87.8 bits (96), Expect = 1e-12
Identities = 143/203 (70%), Gaps = 10/203 (5%)
Strand=Plus/Plus
Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613
||||||||| ||||| || ||||| |||||||| || |||||| | || ||| |||
Sbjct 1686 AATGCAAATCTTTGTGAAGACTTTGACAGGCAAGACTATTACCTTGGAGGTTGAGAGCTC 1745
Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673
| || ||| | | | || || |||||| || || ||||| | || |||||
Sbjct 1746 G-GACACTATTGATAATGTCAAGGCTAAGATTCAGGACAAGGAAGGGATCCCTCCGGATC 1804
Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGAC 107729
||||||||||||| | ||| ||||| || || || |||||| || | || |||
Sbjct 1805 AGCAGAGACTTATCTTTGCCGGTAAGCAACTCGAAGATGGACGC----ACCTTAGCAGAC 1860
Query 107730 TACAACATTCAAAAGGAGTCTAC 107752
||||| ||||| || ||||| ||
Sbjct 1861 TACAATATTCAGAAAGAGTCGAC 1883
Score = 86.0 bits (94), Expect = 5e-12
Identities = 163/236 (69%), Gaps = 3/236 (1%)
Strand=Plus/Plus
Query 107549 GTTTAAA-ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGG 107607
||||| | |||||||| || || |||||| | || || || ||||| || |||| |
Sbjct 995 GTTTACAGATGCAAATATTCGTGAAAACTCTCACTGGAAAGACCATAACTCTCGAGGTCG 1054
Query 107608 AG-GCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCC 107666
|| ||| || || ||| | | || || |||||| || || ||||| | ||
Sbjct 1055 AGAGCTCT-GACACCATCGACAACGTCAAGGCAAAGATCCAGGACAAGGAAGGGATTCCT 1113
Query 107667 GTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCG 107726
||||||||| || | || | || ||||||||||| || || | | || ||||
Sbjct 1114 CCGGATCAGCAACGATTGATCTTCGCCGGTAAACAGCTAGAAGATGGCCGTACCTTGGCT 1173
Query 107727 GACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782
||||| ||||| || |||||||| || |||||| |||| | ||||| |||| ||
Sbjct 1174 GACTATAACATCCAGAAGGAGTCGACCTTGCACTTGGTTCTCCGATTGAGAGGTGG 1229
>seq153189
Length=17048
Score = 98.7 bits (108), Expect = 8e-16
Identities = 151/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
||||| || || |||||||| || || || || || |||||| |||| |||| |||
Sbjct 14509 ATGCAGATCTTCGTCAAAACCTTGACTGGTAAGACTATTACCCTCGAGGTGGAGAGCTCA 14568
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
|| || | | | | || || ||||| || || ||||| | || ||| ||
Sbjct 14569 -GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCACCGGACCA 14627
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||| | || || | || ||||||||||| ||||| | ||| | ||||| |||||
Sbjct 14628 GCAGCGTCTCATCTTCGCTGGTAAACAGCTCGAGGATGGTCGCACACTTGCGGATTACAA 14687
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTT 107767
||||||||||||||| || |||||| |||||||
Sbjct 14688 CATTCAAAAGGAGTCAACTTTGCACTTGGTGTT 14720
Score = 93.3 bits (102), Expect = 3e-14
Identities = 150/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
||||| ||||| ||||| ||| | || ||||| || || ||| | ||| ||| |||
Sbjct 14737 ATGCAGATTTTCGTCAAGACTCTTACTGGCAAGACAATCACCCTTGAAGTCGAGAGCTCT 14796
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
|| || | | | | || || ||||| || || ||||| | || ||| ||
Sbjct 14797 -GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCACCGGACCA 14855
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||| | || || | || ||||||||||| ||||| | ||| | ||||| |||||
Sbjct 14856 GCAGCGTCTCATCTTCGCTGGTAAACAGCTCGAGGATGGTCGCACACTTGCGGATTACAA 14915
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTT 107767
||||||||||||||| || |||||| |||||||
Sbjct 14916 CATTCAAAAGGAGTCAACTTTGCACTTGGTGTT 14948
>seq210337
Length=1863
Score = 93.3 bits (102), Expect = 3e-14
Identities = 148/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
|||||||| |||||||| ||| | || || ||||||||||| | || ||| |||
Sbjct 1268 ATGCAAATCTTTGTCAAGACTCTCACTGGGAAAACCATTACTCTTGAGGTTGAGAGCTC- 1210
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
|||||| ||| | || || ||||| || |||||||| | || ||||||
Sbjct 1209 CGATACGATCGATAATGTCAAGGCTAAGATCCAGGACAAAGAAGGTATCCCTCCGGATCA 1150
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||||||||||| | ||| ||||| || || || || | || | ||||| |||||
Sbjct 1149 GCAGAGACTTATCTTTGCCGGTAAGCAACTTGAAGATGGACGTACTCTTGCGGATTACAA 1090
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764
||| ||||| ||||| || | ||| ||||
Sbjct 1089 CATCCAAAAAGAGTCCACTCTACACTTGGT 1060
Score = 82.4 bits (90), Expect = 6e-11
Identities = 139/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613
||||||||| ||||| || ||||| |||||||| || |||||| | || ||| |||
Sbjct 585 AATGCAAATCTTTGTGAAGACTTTGACAGGCAAGACTATTACCTTGGAGGTTGAGAGCTC 526
Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673
| || ||| | | | || || || ||| || |||||||| | || ||| |
Sbjct 525 G-GACACTATTGATAATGTGAAGGCTAAAATTCAGGACAAAGAAGGGATCCCTCCGGACC 467
Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733
| |||||||| || | || ||||||||||| ||||| | || ||||||| ||||
Sbjct 466 AACAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGGACTTTGGCGGATTACA 407
Query 107734 ACATTCAAAAGGAGTCTAC 107752
| ||||| || || || ||
Sbjct 406 ATATTCAGAAAGAATCGAC 388
>seq50902
Length=6384
Score = 93.3 bits (102), Expect = 3e-14
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAA-CGGAGGCTGG 107614
||||| || || ||||| ||||| || || |||||||| || | || || | ||| |
Sbjct 4356 ATGCAGATATTCGTCAAGACTTTGACGGGTAAAACCATCACTCTTGAGGTCGAAAGCTCG 4415
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||||| | | | | || ||| |||||| ||||||||||| | || ||| ||
Sbjct 4416 -GATACAATTGACAATGTGAAAACGAAGATTCAAGATAAAGAAGGGATCCCTCCGGACCA 4474
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
||||| || || | |||||| |||||||| || || | ||| | |||||||||||
Sbjct 4475 ACAGAGGCTAATCTTTGCGGGAAAACAGCTCGAAGATGGTCGGACATTAGCGGACTACAA 4534
Query 107735 CATTCAAAAGGAGTCTAC 107752
|||||| || ||||| ||
Sbjct 4535 CATTCAGAAAGAGTCCAC 4552
>seq26661
Length=2801
Score = 86.0 bits (94), Expect = 5e-12
Identities = 140/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
||||| || |||||||| || || || ||||| |||||||| | ||| || |||
Sbjct 1402 ATGCAGATCTTTGTCAAGACCTTGACGGGCAAGACCATTACTTTGGAAGTTGAAAGCTCA 1461
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
|| || | | | | || ||| ||||| || || ||||| | || ||||||
Sbjct 1462 -GACACAATTGACAACGTGAAAGCCAAGATCCAGGACAAGGAAGGTATTCCACCGGATCA 1520
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
||||||| | || | || || || || || || |||| | ||| |||||||||||||
Sbjct 1521 GCAGAGATTGATCTTCGCCGGAAAGCAACTTGAAGACGGCCGAACCTTGGCGGACTACAA 1580
Query 107735 CATTCAAAAGGAGTCTACG 107753
|||||| |||||||| |||
Sbjct 1581 CATTCAGAAGGAGTCGACG 1599
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 107550 TTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG 107609
||| | ||||| || || || |||||| | || || || || || ||| |||| |||
Sbjct 940 TTTCAGATGCAGATCTTCGTGAAAACTCTCACCGGAAAGACTATCACCCTCGAGGTGGAA 999
Query 107610 GCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTG 107669
| || || ||| | | || || |||||| || || ||||| | || |
Sbjct 1000 AGTTCTGACACGATCGACAACGTTAAGGCAAAGATCCAGGACAAGGAAGGTATTCCTCCG 1059
Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729
||||||||||| ||||| | ||| || || || |||| || | | || |||||||
Sbjct 1060 GATCAGCAGAGGCTTATCTTTGCTGGAAAGCAATTGGAAGATGGCCGTACCTTGGCGGAT 1119
Query 107730 TACAACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
|||||||| |||||||| || ||| | ||| |||||
Sbjct 1120 TACAACATCCAAAAGGAATCAACGCTTCACTTGGTG 1155
>seq214945
Length=15579
Score = 82.4 bits (90), Expect = 6e-11
Identities = 171/252 (68%), Gaps = 6/252 (2%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAA-CGGAGGCTGG 107614
|||||||| || || || ||| | | |||||| ||||| || |||| || | ||| |
Sbjct 5714 ATGCAAATCTTCGTAAAGACTCTTAAAGGCAAGACCATATCCCTCGAGGTCGAAAGCTCG 5655
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
|| || || | | || || ||||| || |||||||| || || || ||
Sbjct 5654 -GACACAGTAGAAAACGTCAAGGCCAAGATCCAAGAGAAAGAAGGAGTCCCTTCAGACCA 5596
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||||||| || | ||| |||||||||||||| || | || |||| || |||||
Sbjct 5595 ACAGAGACTGATCTTTGCCGGTAAACAGCTGGAAGATGGTCGTACTTTGGCTGATTACAA 5536
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAAAA 107794
||| ||||||||||| | | ||| |||| | || || |||| || || | |
Sbjct 5535 CATCCAAAAGGAGTCAGCTCTCCACTTGGTTCTCAGGTTAAGAGGAGG----TATGCAGA 5480
Query 107795 TATTTGTATTTA 107806
|||||||| |||
Sbjct 5479 TATTTGTAATTA 5468
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397577721584092
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |