Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq54724 113 4e-20 seq117562 107 2e-18 seq153189 98.7 8e-16 seq210337 93.3 3e-14 seq50902 93.3 3e-14 seq26661 86.0 5e-12 seq214945 82.4 6e-11 >seq54724 Length=7877 Score = 113 bits (124), Expect = 4e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||| || || || || |||||||||||| |||| ||| ||| Sbjct 1875 ATGCAGATCTTTGTCAAGACCTTGACCGGTAAAACCATTACCCTCGAGGTTGAGAGCT-C 1933 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || ||| ||||| || |||||||| | || ||| || Sbjct 1934 AGACACCATCGACAACGTGAAAGCCAAGATCCAGGACAAAGAAGGTATCCCTCCGGACCA 1993 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||| | || | ||| || || || || ||||||| || ||| |||| |||||||| Sbjct 1994 GCAGAGATTGATCTTTGCCGGAAAGCAACTCGAGGACGGCAGAACTCTGGCCGACTACAA 2053 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||||| || |||||||| | ||| |||||||| Sbjct 2054 TATTCAGAAAGAGTCTACTCTTCACTTGGTGTTG 2087 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| |||||| | || || || || || ||| |||| ||| | Sbjct 1419 ATGCAGATCTTTGTGAAAACTCTCACCGGAAAGACTATCACCCTCGAGGTGGAAAGTTCT 1478 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | | || || |||||| ||||| ||||| | || ||||||| Sbjct 1479 GATACGATCGACAACGTTAAGGCTAAGATTCAGGATAAGGAAGGAATTCCTCCGGATCAG 1538 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||| | || | || || || ||| |||| || | | || ||||||| |||||| Sbjct 1539 CAGAGATTGATCTTCGCCGGAAAGCAGTTGGAAGATGGCCGTACCTTGGCGGATTACAAC 1598 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 || || ||||| || ||| | ||| |||| Sbjct 1599 ATCCAGAAGGAATCCACGCTTCACTTGGT 1627 >seq117562 Length=2070 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAA-CGGAGGCTGG 107614 |||||||| || ||||| ||||| || || || ||||||||| ||||| || | ||| Sbjct 1231 ATGCAAATCTTCGTCAAGACTTTGACCGGAAAGACCATTACCCTCGAAGTCGAAAGCTCA 1290 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | || ||| ||||| || || ||||| | || |||||| Sbjct 1291 -GATACTATTGATAACGTCAAAGCTAAGATCCAGGACAAGGAAGGTATTCCTCCGGATCA 1349 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| |||||||| | || ||||| ||||| || |||| | || ||||||| ||||| Sbjct 1350 GCAAAGACTTATCTTCGCCGGTAAGCAGCTTGAAGACGGAAGGACTCTGGCGGATTACAA 1409 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || ||||||||||| Sbjct 1410 CATCCAGAAGGAGTCTAC 1427 Score = 87.8 bits (96), Expect = 1e-12 Identities = 143/203 (70%), Gaps = 10/203 (5%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| ||||| || ||||| |||||||| || |||||| | || ||| ||| Sbjct 1686 AATGCAAATCTTTGTGAAGACTTTGACAGGCAAGACTATTACCTTGGAGGTTGAGAGCTC 1745 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 | || ||| | | | || || |||||| || || ||||| | || ||||| Sbjct 1746 G-GACACTATTGATAATGTCAAGGCTAAGATTCAGGACAAGGAAGGGATCCCTCCGGATC 1804 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGAC 107729 ||||||||||||| | ||| ||||| || || || |||||| || | || ||| Sbjct 1805 AGCAGAGACTTATCTTTGCCGGTAAGCAACTCGAAGATGGACGC----ACCTTAGCAGAC 1860 Query 107730 TACAACATTCAAAAGGAGTCTAC 107752 ||||| ||||| || ||||| || Sbjct 1861 TACAATATTCAGAAAGAGTCGAC 1883 Score = 86.0 bits (94), Expect = 5e-12 Identities = 163/236 (69%), Gaps = 3/236 (1%) Strand=Plus/Plus Query 107549 GTTTAAA-ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGG 107607 ||||| | |||||||| || || |||||| | || || || ||||| || |||| | Sbjct 995 GTTTACAGATGCAAATATTCGTGAAAACTCTCACTGGAAAGACCATAACTCTCGAGGTCG 1054 Query 107608 AG-GCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCC 107666 || ||| || || ||| | | || || |||||| || || ||||| | || Sbjct 1055 AGAGCTCT-GACACCATCGACAACGTCAAGGCAAAGATCCAGGACAAGGAAGGGATTCCT 1113 Query 107667 GTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCG 107726 ||||||||| || | || | || ||||||||||| || || | | || |||| Sbjct 1114 CCGGATCAGCAACGATTGATCTTCGCCGGTAAACAGCTAGAAGATGGCCGTACCTTGGCT 1173 Query 107727 GACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| ||||| || |||||||| || |||||| |||| | ||||| |||| || Sbjct 1174 GACTATAACATCCAGAAGGAGTCGACCTTGCACTTGGTTCTCCGATTGAGAGGTGG 1229 >seq153189 Length=17048 Score = 98.7 bits (108), Expect = 8e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || |||||||| || || || || || |||||| |||| |||| ||| Sbjct 14509 ATGCAGATCTTCGTCAAAACCTTGACTGGTAAGACTATTACCCTCGAGGTGGAGAGCTCA 14568 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || || ||||| || || ||||| | || ||| || Sbjct 14569 -GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCACCGGACCA 14627 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | || ||||||||||| ||||| | ||| | ||||| ||||| Sbjct 14628 GCAGCGTCTCATCTTCGCTGGTAAACAGCTCGAGGATGGTCGCACACTTGCGGATTACAA 14687 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTT 107767 ||||||||||||||| || |||||| ||||||| Sbjct 14688 CATTCAAAAGGAGTCAACTTTGCACTTGGTGTT 14720 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||| ||||| ||| | || ||||| || || ||| | ||| ||| ||| Sbjct 14737 ATGCAGATTTTCGTCAAGACTCTTACTGGCAAGACAATCACCCTTGAAGTCGAGAGCTCT 14796 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || || ||||| || || ||||| | || ||| || Sbjct 14797 -GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCACCGGACCA 14855 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | || ||||||||||| ||||| | ||| | ||||| ||||| Sbjct 14856 GCAGCGTCTCATCTTCGCTGGTAAACAGCTCGAGGATGGTCGCACACTTGCGGATTACAA 14915 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTT 107767 ||||||||||||||| || |||||| ||||||| Sbjct 14916 CATTCAAAAGGAGTCAACTTTGCACTTGGTGTT 14948 >seq210337 Length=1863 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| |||||||| ||| | || || ||||||||||| | || ||| ||| Sbjct 1268 ATGCAAATCTTTGTCAAGACTCTCACTGGGAAAACCATTACTCTTGAGGTTGAGAGCTC- 1210 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| ||| | || || ||||| || |||||||| | || |||||| Sbjct 1209 CGATACGATCGATAATGTCAAGGCTAAGATCCAGGACAAAGAAGGTATCCCTCCGGATCA 1150 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||||||||| | ||| ||||| || || || || | || | ||||| ||||| Sbjct 1149 GCAGAGACTTATCTTTGCCGGTAAGCAACTTGAAGATGGACGTACTCTTGCGGATTACAA 1090 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| ||||| ||||| || | ||| |||| Sbjct 1089 CATCCAAAAAGAGTCCACTCTACACTTGGT 1060 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| ||||| || ||||| |||||||| || |||||| | || ||| ||| Sbjct 585 AATGCAAATCTTTGTGAAGACTTTGACAGGCAAGACTATTACCTTGGAGGTTGAGAGCTC 526 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 | || ||| | | | || || || ||| || |||||||| | || ||| | Sbjct 525 G-GACACTATTGATAATGTGAAGGCTAAAATTCAGGACAAAGAAGGGATCCCTCCGGACC 467 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 | |||||||| || | || ||||||||||| ||||| | || ||||||| |||| Sbjct 466 AACAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGGACTTTGGCGGATTACA 407 Query 107734 ACATTCAAAAGGAGTCTAC 107752 | ||||| || || || || Sbjct 406 ATATTCAGAAAGAATCGAC 388 >seq50902 Length=6384 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAA-CGGAGGCTGG 107614 ||||| || || ||||| ||||| || || |||||||| || | || || | ||| | Sbjct 4356 ATGCAGATATTCGTCAAGACTTTGACGGGTAAAACCATCACTCTTGAGGTCGAAAGCTCG 4415 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | || ||| |||||| ||||||||||| | || ||| || Sbjct 4416 -GATACAATTGACAATGTGAAAACGAAGATTCAAGATAAAGAAGGGATCCCTCCGGACCA 4474 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||| || || | |||||| |||||||| || || | ||| | ||||||||||| Sbjct 4475 ACAGAGGCTAATCTTTGCGGGAAAACAGCTCGAAGATGGTCGGACATTAGCGGACTACAA 4534 Query 107735 CATTCAAAAGGAGTCTAC 107752 |||||| || ||||| || Sbjct 4535 CATTCAGAAAGAGTCCAC 4552 >seq26661 Length=2801 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||| || || || ||||| |||||||| | ||| || ||| Sbjct 1402 ATGCAGATCTTTGTCAAGACCTTGACGGGCAAGACCATTACTTTGGAAGTTGAAAGCTCA 1461 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || ||| ||||| || || ||||| | || |||||| Sbjct 1462 -GACACAATTGACAACGTGAAAGCCAAGATCCAGGACAAGGAAGGTATTCCACCGGATCA 1520 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||| | || | || || || || || || |||| | ||| ||||||||||||| Sbjct 1521 GCAGAGATTGATCTTCGCCGGAAAGCAACTTGAAGACGGCCGAACCTTGGCGGACTACAA 1580 Query 107735 CATTCAAAAGGAGTCTACG 107753 |||||| |||||||| ||| Sbjct 1581 CATTCAGAAGGAGTCGACG 1599 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 107550 TTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG 107609 ||| | ||||| || || || |||||| | || || || || || ||| |||| ||| Sbjct 940 TTTCAGATGCAGATCTTCGTGAAAACTCTCACCGGAAAGACTATCACCCTCGAGGTGGAA 999 Query 107610 GCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTG 107669 | || || ||| | | || || |||||| || || ||||| | || | Sbjct 1000 AGTTCTGACACGATCGACAACGTTAAGGCAAAGATCCAGGACAAGGAAGGTATTCCTCCG 1059 Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729 ||||||||||| ||||| | ||| || || || |||| || | | || ||||||| Sbjct 1060 GATCAGCAGAGGCTTATCTTTGCTGGAAAGCAATTGGAAGATGGCCGTACCTTGGCGGAT 1119 Query 107730 TACAACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||||| |||||||| || ||| | ||| ||||| Sbjct 1120 TACAACATCCAAAAGGAATCAACGCTTCACTTGGTG 1155 >seq214945 Length=15579 Score = 82.4 bits (90), Expect = 6e-11 Identities = 171/252 (68%), Gaps = 6/252 (2%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAA-CGGAGGCTGG 107614 |||||||| || || || ||| | | |||||| ||||| || |||| || | ||| | Sbjct 5714 ATGCAAATCTTCGTAAAGACTCTTAAAGGCAAGACCATATCCCTCGAGGTCGAAAGCTCG 5655 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || || | | || || ||||| || |||||||| || || || || Sbjct 5654 -GACACAGTAGAAAACGTCAAGGCCAAGATCCAAGAGAAAGAAGGAGTCCCTTCAGACCA 5596 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||||| || | ||| |||||||||||||| || | || |||| || ||||| Sbjct 5595 ACAGAGACTGATCTTTGCCGGTAAACAGCTGGAAGATGGTCGTACTTTGGCTGATTACAA 5536 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAAAA 107794 ||| ||||||||||| | | ||| |||| | || || |||| || || | | Sbjct 5535 CATCCAAAAGGAGTCAGCTCTCCACTTGGTTCTCAGGTTAAGAGGAGG----TATGCAGA 5480 Query 107795 TATTTGTATTTA 107806 |||||||| ||| Sbjct 5479 TATTTGTAATTA 5468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397577721584092