Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_023557.1 Length=271084 Score E Sequences producing significant alignments: (Bits) Value seq249645 439 4e-118 seq244327 154 3e-32 >seq249645 Length=476466 Score = 439 bits (486), Expect = 4e-118 Identities = 736/1056 (70%), Gaps = 14/1056 (1%) Strand=Plus/Plus Query 71308 GAACCGATGTTCCTGGGTCAGTCGGTTAACGTCTCACGTTATGATCAGCAGAAGTACCCC 71367 || ||||||||| | |||||| | || ||||| | || ||||| || || || |||| Sbjct 268230 GAGCCGATGTTCTTTGGTCAGCCCGTCAACGTAGCGCGCTATGACCAACAAAAACACCCA 268289 Query 71368 GCGTTCGAAAAGCTGATTGAGAAACAACTTTCATTCTTCTGGCGACCTGAAGAGGTGGAT 71427 || || | ||||||| || || | || ||||| ||||| || ||||| || ||| Sbjct 268290 ATCTTTGAGCAATTGATTGAAAAGCAGTTGTCGTTCTTTTGGCGTCCAGAAGAAGTTGAT 268349 Query 71428 GTTTCGCAAGACCGTATCGACTTCCAGGGGTTGCCAGATCATGAAAAACACATCTTCGTT 71487 || || | |||||||| || || | || || || | ||||| || | Sbjct 268350 GTGTCACGCGACCGTATGGATTTTAGCAACCTATCATCCCACGAGCAGCACATATTTTTG 268409 Query 71488 TCTAACCTGAAATACCAAACCCTGCTGGACTCGATTCAGGGTCGTAGCCCGAACGTGGCC 71547 ||||| || || || ||||| || ||||| || || |||||||| || ||||||| Sbjct 268410 AGCAACCTTAAGTATCAGACCCTACTCGACTCTATCCAAGGTCGTAGTCCAAACGTGGTA 268469 Query 71548 TTGCTGCCGATCTGTTCTATCCCGGAACTCGAAACCTGGATTGAAACCTGGGCGTTCTCT 71607 | ||||| | |||||||| || || || || |||||||| || ||| |||||||| Sbjct 268470 CTATTGCCGCTAGTGTCTATCCCTGAGCTTGAGACGTGGATTGAGACATGGTCGTTCTCT 268529 Query 71608 GAAACGATTCACTCGCGCTCATACACCCACATCATCCGTAATATCTTTACTGACCCCTCC 71667 || || |||||||| ||| || || || ||||| ||||||||| | | ||| || Sbjct 268530 GAGACCATTCACTCACGCAGCTATACGCATATCATTCGTAATATCGTCAATGATCCAAAT 268589 Query 71668 ATCGTGTTTGATGACATCGTGACCAACGAACACATCAAAGCGCGTGCTGAGTCCG---TC 71724 || | |||||||| || || ||||| |||||| || ||||| || | || Sbjct 268590 ATTATCTTTGATGATATTATGCAAAACGAGCACATCTTAGGCCGTGCC---TCTGATATC 268646 Query 71725 ACGGAGTATTACGACCAGCTG-ATCGAAATGACCATGTACCTCAACTTACTGGGTGAAGG 71783 | |||| || || ||||| |||| || || || | | |||| |||| || Sbjct 268647 GCCCAGTACTATGATGAGCTGTATCGCAACTCGCAGCTATAT-AGCTTATACGGTGCTGG 268705 Query 71784 TACTCATGTAATCAATGGTAAGAAAGTCGTGGTCTCGATGCGTGCTATCAAGCGTCTGGT 71843 || ||| |||||||| || || || |||| | || || | || | | | Sbjct 268706 CACGCATAATATCAATGGCAAAGAAATCACGGTCGATTTACGCGCACTGAAAAAGCAGAT 268765 Query 71844 CTACCTGTGCATCGTGTCGGTCAACGTGTTGGAAGCCATCCGCTTCTATGTCTCGTTTGC 71903 || ||||||||| || |||||||||| | |||||||| || ||||||||||||||||| Sbjct 268766 GTATCTGTGCATCATGGCGGTCAACGTCCTAGAAGCCATTCGTTTCTATGTCTCGTTTGC 268825 Query 71904 CTGCTCGTTTGCCTTTGCTGAACGCGAGCTGATGGAAGGCAACGCCAAGATCATTAAACT 71963 ||||||||||| |||||||| ||| | |||||||||| || ||||| |||||||| || Sbjct 268826 TTGCTCGTTTGCGTTTGCTGAGCGCAAATTGATGGAAGGTAATGCCAAAATCATTAAGCT 268885 Query 71964 GATCGCCCGTGATGAAGCCCTGCATCTGACCGGCACCCAGCACATGATCATGTTAATGAA 72023 ||||| ||||||||||| |||||| |||| || || ||||| ||| | | | ||| Sbjct 268886 CATCGCTCGTGATGAAGCGCTGCATTTGACAGGTACGCAGCATATGCTAAACCTCATGCG 268945 Query 72024 GTCCGGTGCTGACGATGCTGAGATGGCGGAAATCGTTAAAGAGTGTGAAGCAGAAACATA 72083 |||| ||||||| ||||||||| || || | ||||||| | |||| Sbjct 268946 CAACGGTCGTGACGATCCTGAGATGGTCGAGATTGCCGCAGAGTGTTTCGATGAAAGTAT 269005 Query 72084 CGCACTCTTTAAGGACGCTGCAGAGCAGGAGAAAGACTGGGCGAACTATCTATTCCAGGA 72143 | | |||| | ||||| ||||| || ||||| ||||| |||||| ||| | || Sbjct 269006 TGAAATCTTCCGCAAAGCTGCTGAGCAAGAAAAAGAATGGGCAGGCTATCTGTTCAAAGA 269065 Query 72144 CGGGTCGATGATCGGTCTGAACAAAGAGATCGTGTGCCAGTACATCGAATACATCACCAA 72203 || |||||||| ||||| |||||||| || ||||||| || |||||||||||||| || Sbjct 269066 TGGCTCGATGATTGGTCTAAACAAAGACATTCTGTGCCAATATATCGAATACATCACTAA 269125 Query 72204 CATCCGTATTCGCGCCATCGG-TTACGA-TGACATCTACGCCGGTGTC-AAAGCTAACCC 72260 | | ||||| || |||| || | | | ||| ||| || ||| | ||||| Sbjct 269126 CTTACGTATGGAAGCGGTCGGCTTGCCAGCGGCAT---TCCCGAACTCAAAATCAAACCC 269182 Query 72261 AATCCCATGGATCAACTCCTGGTTGGTTTCTGACAACGTGCAAGTCGCTCCACAGGAAGT 72320 ||| |||||||||||| | |||||| |||||||| ||||||||||| || || || Sbjct 269183 AATTCCATGGATCAACACGTGGTTGTCGTCTGACAATGTGCAAGTCGCCCCGCAAGAGAC 269242 Query 72321 GGAAGTAAGTTCTTATCTGGTCGGTCAGATAGACTC 72356 || | || || || |||| |||||||| || || Sbjct 269243 CGAGATTAGCTCGTACTTGGTTGGTCAGATTGATTC 269278 >seq244327 Length=1302 Score = 154 bits (170), Expect = 3e-32 Identities = 273/398 (69%), Gaps = 0/398 (0%) Strand=Plus/Minus Query 71308 GAACCGATGTTCCTGGGTCAGTCGGTTAACGTCTCACGTTATGATCAGCAGAAGTACCCC 71367 ||||| ||||| | || || | || || | | || ||||||||||| || || Sbjct 1180 GAACCTATGTTTTTTGGACAACCTGTCAATATTGCCCGATATGATCAGCAAAAATATAAT 1121 Query 71368 GCGTTCGAAAAGCTGATTGAGAAACAACTTTCATTCTTCTGGCGACCTGAAGAGGTGGAT 71427 || ||||| | ||||| |||||||| || || || ||| |||||||||| | ||| Sbjct 1120 ATTTTTGAAAAATTAATTGAAAAACAACTCTCTTTTTTTTGGAGACCTGAAGAAATAGAT 1061 Query 71428 GTTTCGCAAGACCGTATCGACTTCCAGGGGTTGCCAGATCATGAAAAACACATCTTCGTT 71487 | || | ||| | || || || || || || || ||||||||||| || || || Sbjct 1060 CTCTCTCGAGATAGAATAGATTTTCAAAATTTACCTGAACATGAAAAACATATTTTTCTT 1001 Query 71488 TCTAACCTGAAATACCAAACCCTGCTGGACTCGATTCAGGGTCGTAGCCCGAACGTGGCC 71547 ||| | ||||| ||||| | | ||||| ||||| || | || || ||| | || Sbjct 1000 AGTAATTTAAAATATCAAACATTATTAGACTCTATTCAAGGAAGAAGTCCTAACATTGCT 941 Query 71548 TTGCTGCCGATCTGTTCTATCCCGGAACTCGAAACCTGGATTGAAACCTGGGCGTTCTCT 71607 || || || || |||||| |||||| | ||||||||||||||||| ||| | || || Sbjct 940 TTTCTACCAATTATTTCTATTCCGGAATTAGAAACCTGGATTGAAACATGGTCTTTTTCG 881 Query 71608 GAAACGATTCACTCGCGCTCATACACCCACATCATCCGTAATATCTTTACTGACCCCTCC 71667 ||||| |||||||| || || || || || || || | ||||| ||| | || || Sbjct 880 GAAACTATTCACTCACGTTCTTATACTCATATTATTAGAAATATTGTTAATTCTCCATCT 821 Query 71668 ATCGTGTTTGATGACATCGTGACCAACGAACACATCAA 71705 | | |||||||| || | |||| |||| || || Sbjct 820 TTAATATTTGATGATATTATTTCCAATAAACATATTAA 783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 864443578158720