Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_023557.1
Length=271084
Score E
Sequences producing significant alignments: (Bits) Value
seq249645 439 4e-118
seq244327 154 3e-32
>seq249645
Length=476466
Score = 439 bits (486), Expect = 4e-118
Identities = 736/1056 (70%), Gaps = 14/1056 (1%)
Strand=Plus/Plus
Query 71308 GAACCGATGTTCCTGGGTCAGTCGGTTAACGTCTCACGTTATGATCAGCAGAAGTACCCC 71367
|| ||||||||| | |||||| | || ||||| | || ||||| || || || ||||
Sbjct 268230 GAGCCGATGTTCTTTGGTCAGCCCGTCAACGTAGCGCGCTATGACCAACAAAAACACCCA 268289
Query 71368 GCGTTCGAAAAGCTGATTGAGAAACAACTTTCATTCTTCTGGCGACCTGAAGAGGTGGAT 71427
|| || | ||||||| || || | || ||||| ||||| || ||||| || |||
Sbjct 268290 ATCTTTGAGCAATTGATTGAAAAGCAGTTGTCGTTCTTTTGGCGTCCAGAAGAAGTTGAT 268349
Query 71428 GTTTCGCAAGACCGTATCGACTTCCAGGGGTTGCCAGATCATGAAAAACACATCTTCGTT 71487
|| || | |||||||| || || | || || || | ||||| || |
Sbjct 268350 GTGTCACGCGACCGTATGGATTTTAGCAACCTATCATCCCACGAGCAGCACATATTTTTG 268409
Query 71488 TCTAACCTGAAATACCAAACCCTGCTGGACTCGATTCAGGGTCGTAGCCCGAACGTGGCC 71547
||||| || || || ||||| || ||||| || || |||||||| || |||||||
Sbjct 268410 AGCAACCTTAAGTATCAGACCCTACTCGACTCTATCCAAGGTCGTAGTCCAAACGTGGTA 268469
Query 71548 TTGCTGCCGATCTGTTCTATCCCGGAACTCGAAACCTGGATTGAAACCTGGGCGTTCTCT 71607
| ||||| | |||||||| || || || || |||||||| || ||| ||||||||
Sbjct 268470 CTATTGCCGCTAGTGTCTATCCCTGAGCTTGAGACGTGGATTGAGACATGGTCGTTCTCT 268529
Query 71608 GAAACGATTCACTCGCGCTCATACACCCACATCATCCGTAATATCTTTACTGACCCCTCC 71667
|| || |||||||| ||| || || || ||||| ||||||||| | | ||| ||
Sbjct 268530 GAGACCATTCACTCACGCAGCTATACGCATATCATTCGTAATATCGTCAATGATCCAAAT 268589
Query 71668 ATCGTGTTTGATGACATCGTGACCAACGAACACATCAAAGCGCGTGCTGAGTCCG---TC 71724
|| | |||||||| || || ||||| |||||| || ||||| || | ||
Sbjct 268590 ATTATCTTTGATGATATTATGCAAAACGAGCACATCTTAGGCCGTGCC---TCTGATATC 268646
Query 71725 ACGGAGTATTACGACCAGCTG-ATCGAAATGACCATGTACCTCAACTTACTGGGTGAAGG 71783
| |||| || || ||||| |||| || || || | | |||| |||| ||
Sbjct 268647 GCCCAGTACTATGATGAGCTGTATCGCAACTCGCAGCTATAT-AGCTTATACGGTGCTGG 268705
Query 71784 TACTCATGTAATCAATGGTAAGAAAGTCGTGGTCTCGATGCGTGCTATCAAGCGTCTGGT 71843
|| ||| |||||||| || || || |||| | || || | || | | |
Sbjct 268706 CACGCATAATATCAATGGCAAAGAAATCACGGTCGATTTACGCGCACTGAAAAAGCAGAT 268765
Query 71844 CTACCTGTGCATCGTGTCGGTCAACGTGTTGGAAGCCATCCGCTTCTATGTCTCGTTTGC 71903
|| ||||||||| || |||||||||| | |||||||| || |||||||||||||||||
Sbjct 268766 GTATCTGTGCATCATGGCGGTCAACGTCCTAGAAGCCATTCGTTTCTATGTCTCGTTTGC 268825
Query 71904 CTGCTCGTTTGCCTTTGCTGAACGCGAGCTGATGGAAGGCAACGCCAAGATCATTAAACT 71963
||||||||||| |||||||| ||| | |||||||||| || ||||| |||||||| ||
Sbjct 268826 TTGCTCGTTTGCGTTTGCTGAGCGCAAATTGATGGAAGGTAATGCCAAAATCATTAAGCT 268885
Query 71964 GATCGCCCGTGATGAAGCCCTGCATCTGACCGGCACCCAGCACATGATCATGTTAATGAA 72023
||||| ||||||||||| |||||| |||| || || ||||| ||| | | | |||
Sbjct 268886 CATCGCTCGTGATGAAGCGCTGCATTTGACAGGTACGCAGCATATGCTAAACCTCATGCG 268945
Query 72024 GTCCGGTGCTGACGATGCTGAGATGGCGGAAATCGTTAAAGAGTGTGAAGCAGAAACATA 72083
|||| ||||||| ||||||||| || || | ||||||| | ||||
Sbjct 268946 CAACGGTCGTGACGATCCTGAGATGGTCGAGATTGCCGCAGAGTGTTTCGATGAAAGTAT 269005
Query 72084 CGCACTCTTTAAGGACGCTGCAGAGCAGGAGAAAGACTGGGCGAACTATCTATTCCAGGA 72143
| | |||| | ||||| ||||| || ||||| ||||| |||||| ||| | ||
Sbjct 269006 TGAAATCTTCCGCAAAGCTGCTGAGCAAGAAAAAGAATGGGCAGGCTATCTGTTCAAAGA 269065
Query 72144 CGGGTCGATGATCGGTCTGAACAAAGAGATCGTGTGCCAGTACATCGAATACATCACCAA 72203
|| |||||||| ||||| |||||||| || ||||||| || |||||||||||||| ||
Sbjct 269066 TGGCTCGATGATTGGTCTAAACAAAGACATTCTGTGCCAATATATCGAATACATCACTAA 269125
Query 72204 CATCCGTATTCGCGCCATCGG-TTACGA-TGACATCTACGCCGGTGTC-AAAGCTAACCC 72260
| | ||||| || |||| || | | | ||| ||| || ||| | |||||
Sbjct 269126 CTTACGTATGGAAGCGGTCGGCTTGCCAGCGGCAT---TCCCGAACTCAAAATCAAACCC 269182
Query 72261 AATCCCATGGATCAACTCCTGGTTGGTTTCTGACAACGTGCAAGTCGCTCCACAGGAAGT 72320
||| |||||||||||| | |||||| |||||||| ||||||||||| || || ||
Sbjct 269183 AATTCCATGGATCAACACGTGGTTGTCGTCTGACAATGTGCAAGTCGCCCCGCAAGAGAC 269242
Query 72321 GGAAGTAAGTTCTTATCTGGTCGGTCAGATAGACTC 72356
|| | || || || |||| |||||||| || ||
Sbjct 269243 CGAGATTAGCTCGTACTTGGTTGGTCAGATTGATTC 269278
>seq244327
Length=1302
Score = 154 bits (170), Expect = 3e-32
Identities = 273/398 (69%), Gaps = 0/398 (0%)
Strand=Plus/Minus
Query 71308 GAACCGATGTTCCTGGGTCAGTCGGTTAACGTCTCACGTTATGATCAGCAGAAGTACCCC 71367
||||| ||||| | || || | || || | | || ||||||||||| || ||
Sbjct 1180 GAACCTATGTTTTTTGGACAACCTGTCAATATTGCCCGATATGATCAGCAAAAATATAAT 1121
Query 71368 GCGTTCGAAAAGCTGATTGAGAAACAACTTTCATTCTTCTGGCGACCTGAAGAGGTGGAT 71427
|| ||||| | ||||| |||||||| || || || ||| |||||||||| | |||
Sbjct 1120 ATTTTTGAAAAATTAATTGAAAAACAACTCTCTTTTTTTTGGAGACCTGAAGAAATAGAT 1061
Query 71428 GTTTCGCAAGACCGTATCGACTTCCAGGGGTTGCCAGATCATGAAAAACACATCTTCGTT 71487
| || | ||| | || || || || || || || ||||||||||| || || ||
Sbjct 1060 CTCTCTCGAGATAGAATAGATTTTCAAAATTTACCTGAACATGAAAAACATATTTTTCTT 1001
Query 71488 TCTAACCTGAAATACCAAACCCTGCTGGACTCGATTCAGGGTCGTAGCCCGAACGTGGCC 71547
||| | ||||| ||||| | | ||||| ||||| || | || || ||| | ||
Sbjct 1000 AGTAATTTAAAATATCAAACATTATTAGACTCTATTCAAGGAAGAAGTCCTAACATTGCT 941
Query 71548 TTGCTGCCGATCTGTTCTATCCCGGAACTCGAAACCTGGATTGAAACCTGGGCGTTCTCT 71607
|| || || || |||||| |||||| | ||||||||||||||||| ||| | || ||
Sbjct 940 TTTCTACCAATTATTTCTATTCCGGAATTAGAAACCTGGATTGAAACATGGTCTTTTTCG 881
Query 71608 GAAACGATTCACTCGCGCTCATACACCCACATCATCCGTAATATCTTTACTGACCCCTCC 71667
||||| |||||||| || || || || || || || | ||||| ||| | || ||
Sbjct 880 GAAACTATTCACTCACGTTCTTATACTCATATTATTAGAAATATTGTTAATTCTCCATCT 821
Query 71668 ATCGTGTTTGATGACATCGTGACCAACGAACACATCAA 71705
| | |||||||| || | |||| |||| || ||
Sbjct 820 TTAATATTTGATGATATTATTTCCAATAAACATATTAA 783
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 864443578158720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |