Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_023561.1
Length=173276
Score E
Sequences producing significant alignments: (Bits) Value
seq26767 163 3e-35
seq249645 147 2e-30
seq117240 84.2 2e-11
>seq26767
Length=1149
Score = 163 bits (180), Expect = 3e-35
Identities = 305/448 (68%), Gaps = 0/448 (0%)
Strand=Plus/Plus
Query 145932 ACATCAGGTCGTTGATTTGAACACCGTAATCCAAGTGACGAATTCGGTTTTCATCTACGC 145991
|||||| | || ||||| || | ||||| | |||||| | || ||||| || | ||
Sbjct 32 ACATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGC 91
Query 145992 CTTTGTTGTTCTTGAGTACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACA 146051
| | || || || | || | | |||||| ||| || ||||| |||||||| | |
Sbjct 92 CCCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATA 151
Query 146052 ATGTCGCCGCGCCACCGCGAACTCCACCTTGGGAGCAAGACTTAACTGCTGTTTGGATGT 146111
|| ||||| ||||| | |||||| ||||| || || || || || || |||| | |
Sbjct 152 TAGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAAT 211
Query 146112 GTTTCCAGAAAGGAATAACTCCAGTATGCTTGACTTCTCCGAAGCCGATTTTTGAACCTT 146171
|||| | ||||||||| |||||||| |||| || | || ||||
Sbjct 212 GTTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTA 271
Query 146172 CTGCACGAATCATACCTGCGTTAATGCCGATACCAGCACGTTTAGAGATGTACTCTACAA 146231
|||||||||| | || || ||||| || || || || |||| ||| | || | |||||
Sbjct 272 CTGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAA 331
Query 146232 TTGATTCAGCAGATTTGTTAATTGATTTCAGTGAATCACCAGCTTCAATAACAACGCAAG 146291
| || || || |||||| || | || |||| || |||||| | ||| || |
Sbjct 332 TAGAACTAGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACATG 391
Query 146292 AACTGAATTGACGAGTAGGAGTACGAGCACCTGCCATAATAGGAGTAGGCAGAGAAATTT 146351
| || ||||| ||||||||||| | | | || | |||||| || || || | ||||||||
Sbjct 392 AGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTT 451
Query 146352 TCTTAGTTGACACAGCATCGTAAAAACG 146379
| |||||| | |||| ||||||||
Sbjct 452 TGAAAGTTGAAATGGCATTATAAAAACG 479
>seq249645
Length=476466
Score = 147 bits (162), Expect = 2e-30
Identities = 312/466 (67%), Gaps = 0/466 (0%)
Strand=Plus/Minus
Query 145887 CTGGAGAGAACAGAGTGATGTAATCGTCTTTAATCAGACGTTCAAACATCAGGTCGTTGA 145946
|||| ||||| || | ||||| | |||| || || || ||||| | ||| |
Sbjct 265012 CTGGTGAGAATAGCGAGATGTCTTGACCTTTGATGAGGCGCGTGTACATCGTTTTGTTTA 264953
Query 145947 TTTGAACACCGTAATCCAAGTGACGAATTCGGTTTTCATCTACGCCTTTGTTGTTCTTGA 146006
|| || ||||| |||| ||||| | ||||| || || || || ||| || ||||
Sbjct 264952 ACTGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTTTTGA 264893
Query 146007 GTACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAATGTCGCCGCGCCAC 146066
|||| || | |||||||| || ||||| | ||| ||| |||| ||||| || || |
Sbjct 264892 GTACCAGTAATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGCACCGC 264833
Query 146067 CGCGAACTCCACCTTGGGAGCAAGACTTAACTGCTGTTTGGATGTGTTTCCAGAAAGGAA 146126
| || || |||||||| ||||| | ||||| || ||||||| ||| | |||||||
Sbjct 264832 CACGTACGCCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAAAGGAA 264773
Query 146127 TAACTCCAGTATGCTTGACTTCTCCGAAGCCGATTTTTGAACCTTCTGCACGAATCATAC 146186
|| |||||||||| |||| ||| | ||| ||| ||||| || ||
Sbjct 264772 TACAGCCAGTATGCTGTGCTTCACCGCCACGGATAGGGCTACCAAGGGCACGGATACGAC 264713
Query 146187 CTGCGTTAATGCCGATACCAGCACGTTTAGAGATGTACTCTACAATTGATTCAGCAGATT 146246
||||||| ||||||||||||||||| | || | || ||| || | || |
Sbjct 264712 CTGCGTTGATGCCGATACCAGCACGCTGTGACACATAGCGTACGATGGCGCTAGTGGTGG 264653
Query 146247 TGTTAATTGATTTCAGTGAATCACCAGCTTCAATAACAACGCAAGAACTGAATTGACGAG 146306
||| || || | | ||||||| ||| || | ||||| || || || ||||| |
Sbjct 264652 CGTTGATAGAGTCTAAGCTATCACCACATTCGATTAAGACGCACGAGCTAAACTGACGCG 264593
Query 146307 TAGGAGTACGAGCACCTGCCATAATAGGAGTAGGCAGAGAAATTTT 146352
|| ||||| |||||| ||| || || || || || || |||||
Sbjct 264592 ATGGCGTACGCACACCTGACATGATTGGCGTTGGTAGTGAGATTTT 264547
>seq117240
Length=334284
Score = 84.2 bits (92), Expect = 2e-11
Identities = 66/79 (84%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 76455 TGGCTGGGGTACCTGGACTCGAACCAGGGAATCGTAGAATCAAAATCTACTGCCTTACCA 76514
|||| |||||| |||||||||||||| | || || ||||||| || ||||||||||
Sbjct 324984 TGGCAGGGGTAGCTGGACTCGAACCAACGGATGTCAGGATCAAAACCTGATGCCTTACCA 325043
Query 76515 ACTTGGCTATACCCCAATT 76533
||||||||||||||| |||
Sbjct 325044 ACTTGGCTATACCCCTATT 325062
Score = 82.4 bits (90), Expect = 8e-11
Identities = 71/88 (81%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 76442 TTACACTCTAATTTGGCTGGGGTACCTGGACTCGAACCAGGGAATCGTAGAATCAAAATC 76501
||||| | || |||| |||||| |||||||||||||| | || || ||||||| |
Sbjct 324656 TTACAGTAAAAAATGGCAGGGGTAGCTGGACTCGAACCAACGGATGTCAGGATCAAAACC 324715
Query 76502 TACTGCCTTACCAACTTGGCTATACCCC 76529
| |||||||||||||||||||||||||
Sbjct 324716 TGATGCCTTACCAACTTGGCTATACCCC 324743
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 552503459607680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |