Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_023561.1 Length=173276 Score E Sequences producing significant alignments: (Bits) Value seq26767 163 3e-35 seq249645 147 2e-30 seq117240 84.2 2e-11 >seq26767 Length=1149 Score = 163 bits (180), Expect = 3e-35 Identities = 305/448 (68%), Gaps = 0/448 (0%) Strand=Plus/Plus Query 145932 ACATCAGGTCGTTGATTTGAACACCGTAATCCAAGTGACGAATTCGGTTTTCATCTACGC 145991 |||||| | || ||||| || | ||||| | |||||| | || ||||| || | || Sbjct 32 ACATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGC 91 Query 145992 CTTTGTTGTTCTTGAGTACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACA 146051 | | || || || | || | | |||||| ||| || ||||| |||||||| | | Sbjct 92 CCCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATA 151 Query 146052 ATGTCGCCGCGCCACCGCGAACTCCACCTTGGGAGCAAGACTTAACTGCTGTTTGGATGT 146111 || ||||| ||||| | |||||| ||||| || || || || || || |||| | | Sbjct 152 TAGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAAT 211 Query 146112 GTTTCCAGAAAGGAATAACTCCAGTATGCTTGACTTCTCCGAAGCCGATTTTTGAACCTT 146171 |||| | ||||||||| |||||||| |||| || | || |||| Sbjct 212 GTTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTA 271 Query 146172 CTGCACGAATCATACCTGCGTTAATGCCGATACCAGCACGTTTAGAGATGTACTCTACAA 146231 |||||||||| | || || ||||| || || || || |||| ||| | || | ||||| Sbjct 272 CTGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAA 331 Query 146232 TTGATTCAGCAGATTTGTTAATTGATTTCAGTGAATCACCAGCTTCAATAACAACGCAAG 146291 | || || || |||||| || | || |||| || |||||| | ||| || | Sbjct 332 TAGAACTAGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACATG 391 Query 146292 AACTGAATTGACGAGTAGGAGTACGAGCACCTGCCATAATAGGAGTAGGCAGAGAAATTT 146351 | || ||||| ||||||||||| | | | || | |||||| || || || | |||||||| Sbjct 392 AGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTT 451 Query 146352 TCTTAGTTGACACAGCATCGTAAAAACG 146379 | |||||| | |||| |||||||| Sbjct 452 TGAAAGTTGAAATGGCATTATAAAAACG 479 >seq249645 Length=476466 Score = 147 bits (162), Expect = 2e-30 Identities = 312/466 (67%), Gaps = 0/466 (0%) Strand=Plus/Minus Query 145887 CTGGAGAGAACAGAGTGATGTAATCGTCTTTAATCAGACGTTCAAACATCAGGTCGTTGA 145946 |||| ||||| || | ||||| | |||| || || || ||||| | ||| | Sbjct 265012 CTGGTGAGAATAGCGAGATGTCTTGACCTTTGATGAGGCGCGTGTACATCGTTTTGTTTA 264953 Query 145947 TTTGAACACCGTAATCCAAGTGACGAATTCGGTTTTCATCTACGCCTTTGTTGTTCTTGA 146006 || || ||||| |||| ||||| | ||||| || || || || ||| || |||| Sbjct 264952 ACTGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTTTTGA 264893 Query 146007 GTACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAATGTCGCCGCGCCAC 146066 |||| || | |||||||| || ||||| | ||| ||| |||| ||||| || || | Sbjct 264892 GTACCAGTAATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGCACCGC 264833 Query 146067 CGCGAACTCCACCTTGGGAGCAAGACTTAACTGCTGTTTGGATGTGTTTCCAGAAAGGAA 146126 | || || |||||||| ||||| | ||||| || ||||||| ||| | ||||||| Sbjct 264832 CACGTACGCCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAAAGGAA 264773 Query 146127 TAACTCCAGTATGCTTGACTTCTCCGAAGCCGATTTTTGAACCTTCTGCACGAATCATAC 146186 || |||||||||| |||| ||| | ||| ||| ||||| || || Sbjct 264772 TACAGCCAGTATGCTGTGCTTCACCGCCACGGATAGGGCTACCAAGGGCACGGATACGAC 264713 Query 146187 CTGCGTTAATGCCGATACCAGCACGTTTAGAGATGTACTCTACAATTGATTCAGCAGATT 146246 ||||||| ||||||||||||||||| | || | || ||| || | || | Sbjct 264712 CTGCGTTGATGCCGATACCAGCACGCTGTGACACATAGCGTACGATGGCGCTAGTGGTGG 264653 Query 146247 TGTTAATTGATTTCAGTGAATCACCAGCTTCAATAACAACGCAAGAACTGAATTGACGAG 146306 ||| || || | | ||||||| ||| || | ||||| || || || ||||| | Sbjct 264652 CGTTGATAGAGTCTAAGCTATCACCACATTCGATTAAGACGCACGAGCTAAACTGACGCG 264593 Query 146307 TAGGAGTACGAGCACCTGCCATAATAGGAGTAGGCAGAGAAATTTT 146352 || ||||| |||||| ||| || || || || || || ||||| Sbjct 264592 ATGGCGTACGCACACCTGACATGATTGGCGTTGGTAGTGAGATTTT 264547 >seq117240 Length=334284 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 76455 TGGCTGGGGTACCTGGACTCGAACCAGGGAATCGTAGAATCAAAATCTACTGCCTTACCA 76514 |||| |||||| |||||||||||||| | || || ||||||| || |||||||||| Sbjct 324984 TGGCAGGGGTAGCTGGACTCGAACCAACGGATGTCAGGATCAAAACCTGATGCCTTACCA 325043 Query 76515 ACTTGGCTATACCCCAATT 76533 ||||||||||||||| ||| Sbjct 325044 ACTTGGCTATACCCCTATT 325062 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 76442 TTACACTCTAATTTGGCTGGGGTACCTGGACTCGAACCAGGGAATCGTAGAATCAAAATC 76501 ||||| | || |||| |||||| |||||||||||||| | || || ||||||| | Sbjct 324656 TTACAGTAAAAAATGGCAGGGGTAGCTGGACTCGAACCAACGGATGTCAGGATCAAAACC 324715 Query 76502 TACTGCCTTACCAACTTGGCTATACCCC 76529 | ||||||||||||||||||||||||| Sbjct 324716 TGATGCCTTACCAACTTGGCTATACCCC 324743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552503459607680