Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_023568.1 Length=246964 Score E Sequences producing significant alignments: (Bits) Value seq26767 134 2e-26 seq249645 113 7e-20 >seq26767 Length=1149 Score = 134 bits (148), Expect = 2e-26 Identities = 286/423 (68%), Gaps = 8/423 (2%) Strand=Plus/Minus Query 78628 TTCTACAATGCAGTTTCGACTCACAAACTTTCATTACCGACACCGATTATGGCAGGCGTT 78687 || || ||||| |||| ||| |||| |||| ||||||||||| |||||| | || ||| Sbjct 476 TTTTATAATGCCATTTCAACTTTCAAAATTTCTTTACCGACACCAATTATGTCTGGAGTT 417 Query 78688 CGTACCCCGACACGCCAGTTTAGTTCGTGTGTTAAGATTGAATCAGGCGACTCTTTGCAT 78747 | || || || || || ||||| || |||||| ||||||| | || | | || Sbjct 416 AGAACTCCTACTCGACAATTTAGCTCATGTGTTTTAATTGAATGTGATGATAATCTAGAT 357 Query 78748 TCAATCAATGAAGTGGCTAAATCAATTGTAAGTTACATTAGTAAGCGTGCAGGTATCGGT 78807 || || || | ||| || ||||||| || || | | || ||||| || ||| Sbjct 356 TCTATTAACGCTACTACTAGTTCTATTGTAAAATATGTTTCTCAACGAGCAGGAATTGGT 297 Query 78808 GTTAACGGCGGTGCGATTCGTGCTGAAGGGGCAGTCGT--TCGTTCAGGTGAG--ATTCG 78863 |||| | || |||||||| | ||| |||| | | | || || ||| Sbjct 296 ATTAATGCTGGAAAAATTCGTGCAGTAGGT--AGTCCTATTAGAAATGGCGAAGCATT-- 241 Query 78864 TCACACTGGTGTAATTCCATTCTGGAAACACTTTCAAACTGCGGTTAAATCGTGTTCTCA 78923 ||| |||||| ||||| || | ||||| ||||||| ||| || ||||| |||||||| Sbjct 240 TCATACTGGTTGTATTCCTTTTTATAAACATTTTCAAAGTGCTGTAAAATCCTGTTCTCA 181 Query 78924 AGGTGGTGTACGTGGGGGTGCTGCGACTCTAACTTACCCGATTTGGCACTTAGAAGTTGA 78983 ||| || || | || || || || ||| || ||| || || ||||| || ||| |||| Sbjct 180 AGGAGGAGTTAGAGGTGGAGCGGCAACTATATTTTATCCAATATGGCATTTTGAAATTGA 121 Query 78984 AAAACTGTTAGTTCTGAAGAACAACAAAGGTGTTGAAGAAAACCGTATTCGTCATCTTGA 79043 || | |||||| | || || || | || |||||||||| | | ||||| |||| Sbjct 120 AAGTTTATTAGTTTTAAAAAATAATAGGGGCATTGAAGAAAATAGAGTACGTCACGTTGA 61 Query 79044 CTA 79046 || Sbjct 60 TTA 58 >seq249645 Length=476466 Score = 113 bits (124), Expect = 7e-20 Identities = 271/405 (67%), Gaps = 4/405 (1%) Strand=Plus/Plus Query 78651 CAAACTTTCATTACCGACACCGATTATGGCAGGCGTTCGTACCCCGACACGCCAGTTTAG 78710 |||| | ||| |||| || || || ||| |||| || ||||| || | || |||||||| Sbjct 264546 CAAAATCTCACTACCAACGCCAATCATGTCAGGTGTGCGTACGCCATCGCGTCAGTTTAG 264605 Query 78711 TTCGTGTGTTAAGATTGAATCAGGCGACTCTTTGCATTCAATCAATGAAGTGGCTAAATC 78770 ||||| || || |||| || || || | || ||||| | ||| | Sbjct 264606 CTCGTGCGTCTTAATCGAATGTGGTGATAGCTTAGACTCTATCAACGCCACCACTAGCGC 264665 Query 78771 AATTGTAAGTTACATTAGTAAGCGTGCAGGTATCGGTGTTAACGGCGGTGCGATTCGTGC 78830 || ||| | || | ||||||| |||||||| | |||| ||| || ||||| Sbjct 264666 CATCGTACGCTATGTGTCACAGCGTGCTGGTATCGGCATCAACGCAGGTCGTATCCGTGC 264725 Query 78831 TGAAGGG-GCAGTCGTTCGTTCAGGTGAGATTCGTCACACTGG-TGTAATTCCATTCTGG 78888 || || | | ||| ||||| | || ||||| |||| |||| || | Sbjct 264726 CCTTGGTAGCCCTA-TCCGTGGCGGTGAAGCACAGCATACTGGCTGTA-TTCCTTTTTAT 264783 Query 78889 AAACACTTTCAAACTGCGGTTAAATCGTGTTCTCAAGGTGGTGTACGTGGGGGTGCTGCG 78948 ||| || ||||| || ||||||| || || |||||||| |||||||| ||||||||| Sbjct 264784 AAATTGTTCCAAACGGCCGTTAAATGCTGCTCACAAGGTGGCGTACGTGGCGGTGCTGCG 264843 Query 78949 ACTCTAACTTACCCGATTTGGCACTTAGAAGTTGAAAAACTGTTAGTTCTGAAGAACAAC 79008 || | ||||| | ||||| ||||||||||| | | | || || || || ||| Sbjct 264844 ACGTTGTTCTACCCACTATGGCATTTAGAAGTTGAGTCATTACTGGTACTCAAAAATAAC 264903 Query 79009 AAAGGTGTTGAAGAAAACCGTATTCGTCATCTTGACTACAGTGTA 79053 ||||||||||| |||||| | |||||| | |||||| | ||| Sbjct 264904 CGCGGTGTTGAAGACAACCGTGTCCGTCATATGGACTACGGCGTA 264948 Score = 105 bits (116), Expect = 1e-17 Identities = 214/307 (70%), Gaps = 12/307 (4%) Strand=Plus/Plus Query 80853 CGCAGTAAAAGAAGCAC-TATATCTGTGTATGCACGCAGTAAACGCACTTGAAGCAATTC 80911 |||| | ||| ||||| | |||||||| || || || |||| || ||||| |||| Sbjct 268748 CGCACTGAAA-AAGCAGATGTATCTGTGCATCATGGCGGTCAACGTCCTAGAAGCCATTC 268806 Query 80912 GTTTCTATGTATCATTCGCATGTACTTTCAACTTTGCAGAGCAAGGTATCATGGAAGGCA 80971 |||||||||| || || || || | || ||||| |||| | |||||||| | Sbjct 268807 GTTTCTATGTCTCGTTTGCTTGCTCGTTTGCGTTTGCTGAGCGCAAATTGATGGAAGGTA 268866 Query 80972 ACGCGAAAGTGATGAAACTCATTGCTCGTGATGAACAACTTCACTTGAAAGGTACACAAG 81031 | || ||| | || || ||||| |||||||||||| || || |||| |||||| || | Sbjct 268867 ATGCCAAAATCATTAAGCTCATCGCTCGTGATGAAGCGCTGCATTTGACAGGTACGCA-G 268925 Query 81032 CAT-TACTCAACATCTGGCATGCA--GGTAAAGATGACCCTGAAATGCTTGAGATTGCT- 81087 ||| | || ||| || || ||| ||| || || ||||| ||| | |||||||| Sbjct 268926 CATATGCTAAACCTCATGC--GCAACGGTCGTGACGATCCTGAGATGGTCGAGATTGCCG 268983 Query 81088 CGTCGTCTT-CAACCTGAAGCTGAAAAAATCTTCATGCAAGTTGTTGAGCAAGAGAAAGA 81146 | || || | | |||| | |||||||| ||| || ||||||||| ||||| Sbjct 268984 CAGAGTGTTTCGA--TGAAAGTATTGAAATCTTCCGCAAAGCTGCTGAGCAAGAAAAAGA 269041 Query 81147 ATGGGCA 81153 ||||||| Sbjct 269042 ATGGGCA 269048 Score = 91.5 bits (100), Expect = 2e-13 Identities = 262/394 (66%), Gaps = 17/394 (4%) Strand=Plus/Plus Query 79744 CAAGGTAAATTACCGATTGACTGGTACAATAAAAATGTTGATAAGCT-TGTCAAGCCGAA 79802 ||||||| || |||||||| |||||| ||| | | |||||| | || |||| | Sbjct 265660 CAAGGTATCTTGCCGATTGATACGTACAAAAAAGACTTGGATAAGATCTGCCAAGAGCCA 265719 Query 79803 TTATAATTTAGATTGGGAAGCACTTCGCGCTGACGTAATTCGTTACGGTATGCGAAATGA 79862 || | ||||||||||||| | || || | || | | | ||||| |||| || Sbjct 265720 CTACA-TTTAGATTGGGAAACGCTACGTGGCGAGATCACTGAGCACGGTCTGCGCAACTC 265778 Query 79863 CACCACTTCAGCTTTCATGCCTTGTGAAAGTAGCTC---TCAGATTAGCAACAGCACAAA 79919 ||| | || || ||||| | |||| | ||| |||||| ||| || || Sbjct 265779 TACCCTAACCGCCTTGATGCCGTCTGAA---ACCTCAAGTCAGATCGCCAATGCGACCAA 265835 Query 79920 CGGCATTGAACCGCCGCGTGCTCTAGTCTCGA-CTAAGCAATCAAAAGACGGTGTATTCA 79978 ||| || || || || |||| ||| ||||| | | |||| ||||||||| || | || | Sbjct 265836 CGGTATCGAGCCACCACGTGGTCTGGTCTCTATCAAAGC-ATCAAAAGATGGCATCTTAA 265894 Query 79979 ACCAAGTTGTACCTGAAGTTGATTTACTGAAAGATGAATACGGTCTAGCATGGAAAGCAT 80038 | ||||| || ||||| |||| || |||||| | |||| ||| |||| || || Sbjct 265895 AGCAAGTCGTGCCTGAGATTGACAAGCTAAAAGATCAGTACGAGCTACTATGGCAA--AT 265952 Query 80039 GTGGTAAAGACAACTTCGGTTATTTGACTCTTGTAGCAATCATGCAGAAGTTTGTAGACC 80098 | | |||| |||||| | | || || || |||||||| || || || || | Sbjct 265953 GCCG----AACAATGACGGTTACCTAAAGCTGGTCGCTATCATGCAAAAATTCGTCGATC 266008 Query 80099 AGAGTATTTCAGCGAATGAATACTACGA-CCCGT 80131 | ||||| || || ||| ||||||| ||||| Sbjct 266009 AAAGTATCTCTGCCAATACTAACTACGATCCCGT 266042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 787517399733120