Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_023573.1 Length=142094 Score E Sequences producing significant alignments: (Bits) Value seq158858 185 8e-42 seq111679 116 3e-21 >seq158858 Length=235449 Score = 185 bits (204), Expect = 8e-42 Identities = 420/625 (67%), Gaps = 14/625 (2%) Strand=Plus/Plus Query 130819 TATTACAATGCAGACGTAGAGAAGGAAATGGTTGTTGCTTCTATCCCTGCTACTGAGCAC 130878 ||||||||||| || | || |||||| | || | | || || || |||||||| || Sbjct 214279 TATTACAATGCGAACATTGAAAAGGAATTAGTAGGAACATCAATACCAGCTACTGAACAT 214338 Query 130879 TCAGTAATGTGCGCAAATGGTAATTATGAAACCATGGATGAGTATGAAACATATAAACGT 130938 ||||| |||| ||||| || || | | ||||| | |||| || || ||| Sbjct 214339 TCAGTTATGTCAGCAAACACAGATGCAGATAGCCGTGATGAATTCGAAATGTACAAGCGT 214398 Query 130939 ATGTTAACAGAAATATATCCAACAGGAATTTTCTCTATTGTATCTGATACTTGGGACTTT 130998 | |||| || ||||||| | ||| | ||| | | || || || || | || || Sbjct 214399 CTTATAACTGAGGTATATCCTAAAGGCTTCTTCAGTGTAGTTTCAGACACGTATGATTTC 214458 Query 130999 TGGG--GTAATATGACTAAAACTTTACCTAGATTAAAGGATATTATTATGGAACGTGATG 131056 |||| ||| || || || ||| ||| | | ||| | || ||||||||||||| Sbjct 214459 TGGGCAGTAGTAGGAGAAATTCTT--CCTCGTCTTAAGAAGGAAATCATGGAACGTGATG 214516 Query 131057 GTAAAGTAGTAATCAGACCTGATAGTGGAGACCCTGTTAAAATTATTTGCGGAGACCCTG 131116 || | || || | ||||||||||||||||||||| ||| || || |||| | Sbjct 214517 GTCGTATGGTTATTCGTCCTGATAGTGGAGACCCTGTTCTTATTCTTACTGGTAACCCAG 214576 Query 131117 ATGCAGATACTGAATATGAACGTAAAGGTGCAGTAGAAGTACTTTGGGATACCTTTGGAG 131176 | ||| | || ||| |||||||||||| | | || | | ||||||| |||||| | Sbjct 214577 AAGCAAAAACAGAACTTGAACGTAAAGGACTAATTGAGGCTTTATGGGATATCTTTGGTG 214636 Query 131177 GTACTGAAACTGAAAAAGGGTACAAAGTATTAGATGAACATGTAGGATTAATTTACGGAG 131236 | || ||||| || || || ||| |||||||| ||| | || ||| || || | Sbjct 214637 GAACAATTACTGAGAAGGGTTATAAACTATTAGATACTCATATTGGTGCAATCTATGGTG 214696 Query 131237 ACTCTATTAACTATGAACGTGCTCAACAAAT--TTGTGAAGGATTAAAAGAAAAAGGTTT 131294 ||||||||| ||| ||||| || || ||| |||| ||| |||||||||| || Sbjct 214697 ACTCTATTACTCTTGAGCGTGCAAAAGCTATTGTTGAGAAG--TTAGAAGAAAAAGGCTT 214754 Query 131295 TGCAAGTATTAATGTTGTATTAGGTGTAGGTAGTTTCTCTTACCAATTTAATACTCGTGA 131354 ||| | || ||||| || || || || || ||| ||||| | | ||||| || Sbjct 214755 TGCTTCAACAAACGTTGTTTTCGGCGTGGGATCTTATACTTTCCAATATCAGACTCGCGA 214814 Query 131355 TACTCACGGGTTTGCAATCAAAGCAACGTATGCTAAGATTAAAAATGAAGAAAAAC--TT 131412 | ||| |||||||| || ||||| || |||||| | ||||| |||| ||| || Sbjct 214815 TTCTCTAGGGTTTGCTATGAAAGCTACATATGCT---GTAGTAAATGGAGAAGAACGTTT 214871 Query 131413 A-TCTATAAAAATCCTAAAACAGAT 131436 | | | || |||| ||||||||| Sbjct 214872 ATTGTTCAAGGATCCAAAAACAGAT 214896 >seq111679 Length=1463 Score = 116 bits (128), Expect = 3e-21 Identities = 213/312 (68%), Gaps = 0/312 (0%) Strand=Plus/Plus Query 14551 ATCATAGTCAAATTCAACTTGAGCAAAGCGGTCTAATGTAGCTCCGTCTAATTGTTGTCT 14610 |||||||| ||| || | | |||| | ||| |||||||| | |||| | || | Sbjct 1143 ATCATAGTTAAAGTCTAAAAGTACAAACCTGTCCAATGTAGCAGCATCTAGTATATGACG 1202 Query 14611 ACCTACATAAATGTGGTCTGCTCCTGTTCCCATAGTATTACCTGCTGACACAACTCTGAA 14670 ||| ||| ||||| ||||| | || | |||||| | || | ||| || | || Sbjct 1203 TCCTGTATACTGCTGGTCAGCTCCCCTACCTGTTGTATTAGCAGCAGCCACTACAGTAAA 1262 Query 14671 ATCTTCATGAGCTGTTACACGTCCAATAGGGAAGTCAAAGTATTTATTTGCAATAGCTGA 14730 ||| ||| ||| | ||| |||| || | |||||| ||| ||||| || | Sbjct 1263 ATCAGGATGTGCTTGAGCTTTACCATTAGGAAAATTAAAGTACCGATTAGCAATTGCAGC 1322 Query 14731 ATTAAGAATTAATAGTACTTCAGGAATAGATGCATCCATTTCATCTAAGAAGAATAACCC 14790 ||| || || | || | || || | || |||||||||||||||||||| |||| || Sbjct 1323 ATTCAGTATAACTAAAGCCTCTGGTACCGAAGCATCCATTTCATCTAAGAAAAATATACC 1382 Query 14791 ACCTTTTGTAAATGCTTTATAGAATTGAGTTTCATGAAACTTACCATTTGCATCAATAAA 14850 || || ||||| |||| || || ||||| || ||| | ||||| || |||||||| Sbjct 1383 CCCCTTAGTAAAAGCTTGGTAAAACTGAGTCTCCTGATATGTACCAGAAGCGTCAATAAA 1442 Query 14851 TCCTGTTAATTT 14862 ||| |||||||| Sbjct 1443 TCCAGTTAATTT 1454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 453054367747520