Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_023573.1
Length=142094
Score E
Sequences producing significant alignments: (Bits) Value
seq158858 185 8e-42
seq111679 116 3e-21
>seq158858
Length=235449
Score = 185 bits (204), Expect = 8e-42
Identities = 420/625 (67%), Gaps = 14/625 (2%)
Strand=Plus/Plus
Query 130819 TATTACAATGCAGACGTAGAGAAGGAAATGGTTGTTGCTTCTATCCCTGCTACTGAGCAC 130878
||||||||||| || | || |||||| | || | | || || || |||||||| ||
Sbjct 214279 TATTACAATGCGAACATTGAAAAGGAATTAGTAGGAACATCAATACCAGCTACTGAACAT 214338
Query 130879 TCAGTAATGTGCGCAAATGGTAATTATGAAACCATGGATGAGTATGAAACATATAAACGT 130938
||||| |||| ||||| || || | | ||||| | |||| || || |||
Sbjct 214339 TCAGTTATGTCAGCAAACACAGATGCAGATAGCCGTGATGAATTCGAAATGTACAAGCGT 214398
Query 130939 ATGTTAACAGAAATATATCCAACAGGAATTTTCTCTATTGTATCTGATACTTGGGACTTT 130998
| |||| || ||||||| | ||| | ||| | | || || || || | || ||
Sbjct 214399 CTTATAACTGAGGTATATCCTAAAGGCTTCTTCAGTGTAGTTTCAGACACGTATGATTTC 214458
Query 130999 TGGG--GTAATATGACTAAAACTTTACCTAGATTAAAGGATATTATTATGGAACGTGATG 131056
|||| ||| || || || ||| ||| | | ||| | || |||||||||||||
Sbjct 214459 TGGGCAGTAGTAGGAGAAATTCTT--CCTCGTCTTAAGAAGGAAATCATGGAACGTGATG 214516
Query 131057 GTAAAGTAGTAATCAGACCTGATAGTGGAGACCCTGTTAAAATTATTTGCGGAGACCCTG 131116
|| | || || | ||||||||||||||||||||| ||| || || |||| |
Sbjct 214517 GTCGTATGGTTATTCGTCCTGATAGTGGAGACCCTGTTCTTATTCTTACTGGTAACCCAG 214576
Query 131117 ATGCAGATACTGAATATGAACGTAAAGGTGCAGTAGAAGTACTTTGGGATACCTTTGGAG 131176
| ||| | || ||| |||||||||||| | | || | | ||||||| |||||| |
Sbjct 214577 AAGCAAAAACAGAACTTGAACGTAAAGGACTAATTGAGGCTTTATGGGATATCTTTGGTG 214636
Query 131177 GTACTGAAACTGAAAAAGGGTACAAAGTATTAGATGAACATGTAGGATTAATTTACGGAG 131236
| || ||||| || || || ||| |||||||| ||| | || ||| || || |
Sbjct 214637 GAACAATTACTGAGAAGGGTTATAAACTATTAGATACTCATATTGGTGCAATCTATGGTG 214696
Query 131237 ACTCTATTAACTATGAACGTGCTCAACAAAT--TTGTGAAGGATTAAAAGAAAAAGGTTT 131294
||||||||| ||| ||||| || || ||| |||| ||| |||||||||| ||
Sbjct 214697 ACTCTATTACTCTTGAGCGTGCAAAAGCTATTGTTGAGAAG--TTAGAAGAAAAAGGCTT 214754
Query 131295 TGCAAGTATTAATGTTGTATTAGGTGTAGGTAGTTTCTCTTACCAATTTAATACTCGTGA 131354
||| | || ||||| || || || || || ||| ||||| | | ||||| ||
Sbjct 214755 TGCTTCAACAAACGTTGTTTTCGGCGTGGGATCTTATACTTTCCAATATCAGACTCGCGA 214814
Query 131355 TACTCACGGGTTTGCAATCAAAGCAACGTATGCTAAGATTAAAAATGAAGAAAAAC--TT 131412
| ||| |||||||| || ||||| || |||||| | ||||| |||| ||| ||
Sbjct 214815 TTCTCTAGGGTTTGCTATGAAAGCTACATATGCT---GTAGTAAATGGAGAAGAACGTTT 214871
Query 131413 A-TCTATAAAAATCCTAAAACAGAT 131436
| | | || |||| |||||||||
Sbjct 214872 ATTGTTCAAGGATCCAAAAACAGAT 214896
>seq111679
Length=1463
Score = 116 bits (128), Expect = 3e-21
Identities = 213/312 (68%), Gaps = 0/312 (0%)
Strand=Plus/Plus
Query 14551 ATCATAGTCAAATTCAACTTGAGCAAAGCGGTCTAATGTAGCTCCGTCTAATTGTTGTCT 14610
|||||||| ||| || | | |||| | ||| |||||||| | |||| | || |
Sbjct 1143 ATCATAGTTAAAGTCTAAAAGTACAAACCTGTCCAATGTAGCAGCATCTAGTATATGACG 1202
Query 14611 ACCTACATAAATGTGGTCTGCTCCTGTTCCCATAGTATTACCTGCTGACACAACTCTGAA 14670
||| ||| ||||| ||||| | || | |||||| | || | ||| || | ||
Sbjct 1203 TCCTGTATACTGCTGGTCAGCTCCCCTACCTGTTGTATTAGCAGCAGCCACTACAGTAAA 1262
Query 14671 ATCTTCATGAGCTGTTACACGTCCAATAGGGAAGTCAAAGTATTTATTTGCAATAGCTGA 14730
||| ||| ||| | ||| |||| || | |||||| ||| ||||| || |
Sbjct 1263 ATCAGGATGTGCTTGAGCTTTACCATTAGGAAAATTAAAGTACCGATTAGCAATTGCAGC 1322
Query 14731 ATTAAGAATTAATAGTACTTCAGGAATAGATGCATCCATTTCATCTAAGAAGAATAACCC 14790
||| || || | || | || || | || |||||||||||||||||||| |||| ||
Sbjct 1323 ATTCAGTATAACTAAAGCCTCTGGTACCGAAGCATCCATTTCATCTAAGAAAAATATACC 1382
Query 14791 ACCTTTTGTAAATGCTTTATAGAATTGAGTTTCATGAAACTTACCATTTGCATCAATAAA 14850
|| || ||||| |||| || || ||||| || ||| | ||||| || ||||||||
Sbjct 1383 CCCCTTAGTAAAAGCTTGGTAAAACTGAGTCTCCTGATATGTACCAGAAGCGTCAATAAA 1442
Query 14851 TCCTGTTAATTT 14862
||| ||||||||
Sbjct 1443 TCCAGTTAATTT 1454
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 453054367747520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |