Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_023581.1 Length=77792 Score E Sequences producing significant alignments: (Bits) Value seq214244 127 1e-24 seq81543 102 4e-17 seq125822 87.8 9e-13 >seq214244 Length=1107 Score = 127 bits (140), Expect = 1e-24 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 37924 ATTGCCACCTTGTCATACATTGTTCCAGTTCTTTGTAGAGAATGGAAAACTAAGCTGTCA 37983 ||| ||||||||||||| ||| || ||||| | ||| || |||| |||| ||||| Sbjct 344 ATTACCACCTTGTCATATATTATTTCAGTTTTATGTTTTTAACAAAAAATTAAGTTGTCA 285 Query 37984 GTTATATCAACGTAGTGCTGATTTCTTCTTAGGTGTTCCATTTAATATTGCAAGCTATGC 38043 | || |||||| | |||| | || | || | || |||||||| || || ||||| Sbjct 284 ACTTTACCAACGTTCTTGTGATGTATTTCTTGGATTACCTTTTAATATAGCTAGTTATGC 225 Query 38044 GTTGCTTACACATATCGTAGCTGCAGAATGTGGATTAGAAGTTGGTGAATTTGTCTGGAC 38103 | |||| ||||| |||| | |||||| ||||||||||| |||||| | ||||| Sbjct 224 AATACTTATTCATATGATAGCACAACAATGTGATTTAGAAGTTGGAGAATTTTTATGGAC 165 Query 38104 TGGTGGTGTAGTTCACCTGTACAGTAATCACCTTGAGCAAGCTAAAAAACAATTA 38158 || |||| || || || || | ||||||| |||| ||| ||||||||| || Sbjct 164 AGGAGGTGATGTCCATCTATATAATAATCACATTGAATTAGCAAAAAAACAAGTA 110 >seq81543 Length=132751 Score = 102 bits (112), Expect = 4e-17 Identities = 139/193 (72%), Gaps = 6/193 (3%) Strand=Plus/Minus Query 37922 GCATTGCCACCTTGTCATACATTGTTCCAGTTCTTTGTAG---AGAATGGAAAACTAAGC 37978 || ||||| || || ||||| | || ||||||||||| | | ||| ||||| Sbjct 70813 GCCTTGCCGCCCTGCCATACTCTATTTCAGTTCTTTGTCGCTGACAAT---AAACTGTCA 70757 Query 37979 TGTCAGTTATATCAACGTAGTGCTGATTTCTTCTTAGGTGTTCCATTTAATATTGCAAGC 38038 || ||| ||||||| || || ||||| ||| ||||||| ||||| |||||||||||| Sbjct 70756 TGCCAGCTATATCAGCGCTCAGCGGATTTATTCCTAGGTGTGCCATTCAATATTGCAAGC 70697 Query 38039 TATGCGTTGCTTACACATATCGTAGCTGCAGAATGTGGATTAGAAGTTGGTGAATTTGTC 38098 || ||| | | || || || || || | || ||||| || |||||||| ||| || Sbjct 70696 TACGCGCTCTTGACCCACATGGTCGCACAGGTTTGCGGATTGGACGTTGGTGAGTTTATC 70637 Query 38099 TGGACTGGTGGTG 38111 ||||| || |||| Sbjct 70636 TGGACAGGCGGTG 70624 >seq125822 Length=25115 Score = 87.8 bits (96), Expect = 9e-13 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 37851 AAATTAAAACTAACCCTACATCACGCCGTCTAATTGTCAATGGATGGAATCCACATGAAG 37910 ||||||| || || || || || ||||| ||||||| || |||||||| | || Sbjct 8058 AAATTAAGACGAATCCGGATTCTCGTCGTCTGATTGTCAGTGCTTGGAATCCCGGTCAAT 8117 Query 37911 TAGATAAGGCAGCATTGCCACCTTGTCATACATTGTTCCAGTTCTTTGTAGAGAATGGAA 37970 |||| || || ||||| || || || |||| || || | ||| | ||| |||| Sbjct 8118 TAGAAGAGATGGCCTTGCCGCCCTGCCACCTGCTGTTTCAATTTTATGTCGCGAACGGAA 8177 Query 37971 AACTAAGCTGTCAGTTATATCAACGTAGTGCTGATTTCTTCTTAGGTGTTCCATTTAATA 38030 | | || ||| | || ||||| ||| ||| |||| ||||||||||||||||||| Sbjct 8178 AGTTGTCGTGCCAGCTTTACCAACGGTCTGCCGATGTCTTTTTAGGTGTTCCATTTAATA 8237 Query 38031 TTGCAAGCTATGCGTTGCTTACACATAT 38058 |||| || || ||||| || || || Sbjct 8238 TTGCTTCTTACGCTTTGCTGACGCACAT 8265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 247999266631324