Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq28607 590 7e-164 seq218717 141 1e-28 seq180749 141 1e-28 >seq28607 Length=83266 Score = 590 bits (654), Expect = 7e-164 Identities = 726/989 (73%), Gaps = 2/989 (0%) Strand=Plus/Minus Query 157051 TTCTGCGAGTGGGTAACTTCCACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTGCTT 157110 ||||| | ||| |||| ||| | || ||| | || |||| ||||| ||||| | Sbjct 1502 TTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 1443 Query 157111 ATGATTCCAACATTGCTTGCAGCAACTATCTGCTTCATTGTTGCATTCGTAGCAGCACCT 157170 ||||| || || || | | |||||| | || ||| | |||||| | || || ||| Sbjct 1442 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 1383 Query 157171 CCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCAACAAC 157230 || || ||||| || |||||||| ||||| ||| |||| ||||| | || || ||||| Sbjct 1382 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 1323 Query 157231 ATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTACCCCATC 157290 || || || ||||| || ||||| |||| || || ||| | || || ||||| ||| Sbjct 1322 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATC 1263 Query 157291 TGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTGGTAGTC 157350 |||||||| ||||| ||||||| ||||| |||||||| ||||||| |||| | || Sbjct 1262 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTT 1203 Query 157351 TTTCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCGT 157410 | ||||| | | || | | |||||||| ||||||||||||||| || |||| Sbjct 1202 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 1143 Query 157411 TTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTGCA 157470 | |||||||| || ||||| |||||| || || || || || || ||||| | ||| Sbjct 1142 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGCT 1083 Query 157471 GTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATC 157530 || ||| | |||| || | |||||||| ||| || |||| ||||||||| || ||| Sbjct 1082 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 1023 Query 157531 TCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAGCACAATATTCTTATGCATCCG 157590 ||||||||||| |||| |||| | || |||||||| |||||||| ||||||||||| || Sbjct 1022 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 963 Query 157591 TTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGGA 157650 || |||||| | || || ||||| |||||||| || || | || ||||||||| || Sbjct 962 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGT 903 Query 157651 AGTCTCGTTACTTCCTCGCTTGTTC-GTGAAACAACTGAAACAGAGTCACAGAACTATGG 157709 | || |||| || | ||| || | ||||| || |||| || || || | || Sbjct 902 TCCTTGGTAACTT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 844 Query 157710 TTACAAGTTCGGTCAAGAAGAAGAGACGTACAACATCGTTGCTGCACACGGTTACTTCGG 157769 |||||| ||||| ||||||||||| || |||||||| || ||||| || ||||| || || Sbjct 843 TTACAAATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGG 784 Query 157770 TCGCCTGATCTTCCAATACGCTTCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTCGC 157829 || ||||||||||||| ||| |||||||| | | | || |||||| | || Sbjct 783 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 724 Query 157830 CGCATGGCCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAA 157889 || ||||| || || || || ||||| ||||| | || | ||||||||||| ||||| Sbjct 723 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACCATGGCTTTCAA 664 Query 157890 CCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACAC 157949 ||| || |||||||| |||||||| || | ||||| |||| || ||||| | || || Sbjct 663 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATAC 604 Query 157950 CTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGC 158009 ||||| ||| | | ||||| ||| ||||||||||||||||||||||| ||||| || Sbjct 603 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 544 Query 158010 ACACAACTTCCCACTGGATCTTGCTGCTG 158038 ||||||||||| || || || ||||||| Sbjct 543 TCACAACTTCCCTCTAGACCTAGCTGCTG 515 Score = 540 bits (598), Expect = 1e-148 Identities = 728/1011 (72%), Gaps = 2/1011 (0%) Strand=Plus/Plus Query 158775 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 158834 ||||| || | || |||||| | |||| || ||||||||||| || |||||||| Sbjct 32404 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 32463 Query 158835 CTTCTTCTTCTACCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTC 158894 || | || | || ||| ||| | ||| | || |||||| | || || || || || Sbjct 32464 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 32523 Query 158895 GCTACGAGCTGGTATACACATGGACTCGCTACTTCCTATCTTGAGGGTGCAAACTTTCTT 158954 | || |||||||| |||||| | |||| ||||||| | || ||| || ||| | Sbjct 32524 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 32583 Query 158955 ACAGCAGCAGTTTCGACTCCAGCTGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGT 159014 || || || ||||||||||| ||| || | | | |||||| | || | || |||||| Sbjct 32584 ACCGCTGCCGTTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 32643 Query 159015 CCTGAGGCTCAAGGGGATTTCGTCAGGTGGGTCCAACTTGGGGGACTCTGGAATTTTGTG 159074 ||||| || ||||| ||||| | ||| ||| | || || || ||| |||||| Sbjct 32644 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTT 32703 Query 159075 GCGCTCCACGGTGCCTTTGCCCTAATTGGTTTCATGCTTCGCCAGTTTGAACTGGCACG- 159133 || |||||||| || || || |||| ||||| ||| | || || |||||||| || || Sbjct 32704 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 32763 Query 159134 TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGT 159193 || || | | || || || ||||| || || ||||||||||| |||||||||||||| Sbjct 32764 TCCGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 32822 Query 159194 CAGCGTCTTCCTTATCTACCCACTTGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGG 159253 |||||||| || || ||||| ||||| || ||||||| || || || ||||| Sbjct 32823 TTCTGTCTTCCTAATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 32882 Query 159254 GGTGGCCGCAATATTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTGGACACTAAA 159313 || || || ||||| | ||| | ||||| | |||||||| || ||||||||| | || Sbjct 32883 TGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 32942 Query 159314 CCCCTTCCATATGATGGGAGTTGCTGGTATCCTAGGTGGAGCACTTCTATCTGCTATTCA 159373 ||| || |||||||||||||| || ||| | || || | || || |||| |||||||| Sbjct 32943 CCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCCGCTCTGCTATGCGCTATTCA 33002 Query 159374 TGGGGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGGC 159433 ||| | || || |||||||| |||| || ||||| || ||||| || || || Sbjct 33003 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 33062 Query 159434 GTTTGATTCAACTCAAGAGGAGGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTC 159493 ||| | ||||||||| || || |||||||| |||||||| || |||||||| ||||| Sbjct 33063 TTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 33122 Query 159494 GCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTTATGTTGTTTGT 159553 || ||||| || |||| ||||| || || || ||| | |||||||||||||| ||||| Sbjct 33123 ACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 33182 Query 159554 GCCTGTTATGGGTCTATGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTTCG 159613 || || | ||| |||||| | |||| | | || || ||| | || || || Sbjct 33183 ACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTACG 33242 Query 159614 TGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAAACGTT 159673 ||| || || ||||| || || ||| | ||||| |||||||| |||||||| || || Sbjct 33243 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTT 33302 Query 159674 CTACACCAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCA 159733 ||| || || || |||||| | || ||||| | ||||||||| |||| || ||||| Sbjct 33303 CTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 33362 Query 159734 ACCCCATGAAAACTTCATCTTCCCAGAAGAAGTTCTACCAAGAGGTAACGC 159784 || ||||||||| | || ||||| || || ||||||||| | || ||||| Sbjct 33363 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 33413 >seq218717 Length=448 Score = 141 bits (156), Expect = 1e-28 Identities = 164/220 (75%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 157378 TATATGGGACGTGAGTGGGAACTTTCTTACCGTTTAGGTATGCGCCCCTGGATCTGTGTT 157437 |||||| | ||||||||||||||| || || | |||||||| || ||||| |||| Sbjct 226 TATATGAGTCGTGAGTGGGAACTTAGTTTATGTCTGGGTATGCGTCCTTGGATTGTTGTT 167 Query 157438 GCCTACTCGGCACCAGTC-GCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCA 157496 || || || || || || || ||||| | || || ||| | | ||||| | ||||| Sbjct 166 GCATATTCAGCTCCTGTTTGCAGCTGCTATTGTTGTTTTCTTGATTTATCCAATTGGTCA 107 Query 157497 AGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTCGT 157556 ||| ||| | ||| ||||||||| || |||||| ||||||| |||| ||| | || Sbjct 106 AGGAAGTTTTTTTAATGGTATGCCTCTAGGAATCTCTTGTACTTTCAACTTTATTATTGT 47 Query 157557 CTTCCAGGCAGAGCACAATATTCTTATGCATCCGTTCCAC 157596 |||||||| |||||||| ||||||||||| || || ||| Sbjct 46 ATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCAC 7 >seq180749 Length=15184 Score = 141 bits (156), Expect = 1e-28 Identities = 143/186 (77%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 158222 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAACTACTCTTGTCGTGCTGGT 158281 ||| | || |||||||| |||||||||||| | ||| | |||||||| || ||||| Sbjct 10955 TACGTCCTCGACGCAGCTGAAGAAGCAGGAATCGATTTGCCTTACTCTTGCCGCTCTGGT 11014 Query 158282 GCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCG 158341 | || ||| |||||||||||| || |||||||||||||||||| ||| ||| Sbjct 11015 TCATGTTCTAGCTGTGCAGGTAAAGTTAAGTCTGGAACTGTTGATCAGTCTGACCAGAGT 11074 Query 158342 TTCCTAGACGATGATCAAATCGCAGCAGGATTTGTTCTTACGTGTGTAGCATATCCAACA 158401 ||||| || |||||||| || || | |||||||||||| || |||| || ||||| || Sbjct 11075 TTCCTCGATGATGATCAGATTGCTGAAGGATTTGTTCTCACTTGTGCTGCTTATCCTACC 11134 Query 158402 TCTGAT 158407 |||||| Sbjct 11135 TCTGAT 11140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543452195330240