Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_023587.1
Length=189311
Score E
Sequences producing significant alignments: (Bits) Value
seq28607 563 1e-155
seq180749 143 3e-29
seq218717 136 5e-27
>seq28607
Length=83266
Score = 563 bits (624), Expect = 1e-155
Identities = 729/1004 (73%), Gaps = 2/1004 (0%)
Strand=Plus/Plus
Query 178949 TGGATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179008
||||||||||| | |||| ||||| || ||||| ||||||||||| || | ||
Sbjct 32414 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 32473
Query 179009 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179068
|||| ||| ||| | || | || |||||| | || || ||| | ||||| || |
Sbjct 32474 TTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 32533
Query 179069 GGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTG 179128
|||| || ||||| | |||||||||||| | |||||| || ||| | || || || |
Sbjct 32534 GGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCCG 32593
Query 179129 TCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 179188
| ||||| |||||| || | | | |||||| | | |||| ||||||||||| | |
Sbjct 32594 TTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCAC 32653
Query 179189 AGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACG 179248
| || |||| || ||||| ||| | || || || ||| ||| || ||||||||||
Sbjct 32654 AAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACG 32713
Query 179249 GTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGT 179307
| || ||||| |||| || || ||| | ||||| |||||||| || || || || |
Sbjct 32714 GCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCCGTTCAAT 32773
Query 179308 ATCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATTT 179367
| || ||||| ||||| || || || ||||||| ||||| || || ||| ||| ||
Sbjct 32774 -TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTC 32832
Query 179368 CTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGCG 179427
|| || || ||||| || ||||| |||||||||||||||| |||||||| |||||
Sbjct 32833 CTAATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCT 32892
Query 179428 ATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCAC 179487
|| ||| ||||| | || || || ||||| || || || |||||| | ||||| |||||
Sbjct 32893 ATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCAT 32952
Query 179488 ATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAACT 179547
||||||||||| || ||| | ||||| | |||||||| | ||||||||||| | |||
Sbjct 32953 ATGATGGGAGTCGCCGGTGTACTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACT 33012
Query 179548 GTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGACTCT 179607
||||| ||||| || | ||||||||| || ||||| ||||| || || || |
Sbjct 33013 GTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCA 33072
Query 179608 ACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCTTC 179667
|| |||| || || || ||||| ||||| || || ||||| |||||||| || |||||
Sbjct 33073 ACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTT 33132
Query 179668 GGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTCATG 179727
|||||| | ||| |||||| |||||||| || ||||||| | | ||||| || || |
Sbjct 33133 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACT 33192
Query 179728 GGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTCTTAATCTTCGTGCTTATGAT 179787
||| | ||| | | || |||| | | || |||||| | || || ||||| |||||
Sbjct 33193 GGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTACGTGCCTATGAC 33252
Query 179788 TTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTATACAAAG 179847
|| || || || ||| | ||||| |||||||| || || ||||| |||||||| ||
Sbjct 33253 TTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAA 33312
Query 179848 AACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCACATGAA 179907
|| |||||| | || ||||| | ||||||||| |||| || ||||| || ||||||
Sbjct 33313 AATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 33372
Query 179908 AACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGGTAACGCACT 179951
||| | || ||||| || || || ||||| |||| ||||| ||
Sbjct 33373 AACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 33416
Score = 554 bits (614), Expect = 5e-153
Identities = 697/953 (73%), Gaps = 3/953 (0%)
Strand=Plus/Minus
Query 177600 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTC 177659
|| ||||| || || ||||||| || || | ||| | |||||| | || || ||
Sbjct 1460 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATC 1401
Query 177660 GCCTTCGTCGCTGCTCCCCCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCA 177719
|| ||| | |||||||| || || || || || || || |||||||| || |||| ||
Sbjct 1400 GCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 1341
Query 177720 CTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGT 177779
|| | || || ||||| || || || ||||| || | || |||| || ||||||
Sbjct 1340 CTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGT 1281
Query 177780 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 177839
| || || || || ||||||||||| ||||| ||||||| ||||| || ||||| |||
Sbjct 1280 TTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGT 1221
Query 177840 CCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAG 177899
|||| |||| | || | ||||| | | || | | |||||||| ||||||
Sbjct 1220 CCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 1161
Query 177900 TGGGAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCACCT 177959
||||||||| | |||||| |||||||| || ||||| ||||||||| || || |||
Sbjct 1160 TGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCT 1101
Query 177960 GTTGCAGCAGCATCCGCAGTCTTTCTAG-TCTATCCTTTCGGTCAAGGTTCATTCTCCGA 178018
|||||||| ||| | || || ||||| | |||| || | |||||||| || || ||
Sbjct 1100 GTTGCAGCTGCAACTGCTGT-TTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGA 1042
Query 178019 TGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACA 178078
|| ||||||||| || |||||||||||||| |||| ||| |||||||||| || || ||
Sbjct 1041 TGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCA 982
Query 178079 CAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCT 178138
||| || ||||||||||| || |||||| | ||||| ||||| |||||||| || || ||
Sbjct 981 CAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCT 922
Query 178139 TTTCTCTGCTATGCATGGAAGTCTCGTTACTTCTTCGCTCGTCCGTGAGACGACAGAAAC 178198
|| |||||||||||| | || |||||| | || | || || |||||||
Sbjct 921 ATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAA 862
Query 178199 TGAGTCCCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATATAACATCGTCGC 178258
||| || || | |||||||| |||||||||||||||||||| || ||||| || ||
Sbjct 861 TGAATCTGCTAATGAAGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATTGTAGC 802
Query 178259 AGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGTTCAACAACTCCCGTTC 178318
|| |||||||| || || || ||||||||||||||||| |||||||| || |||||
Sbjct 801 TGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTC 742
Query 178319 ACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTTGGTGT 178378
| || |||||| | || || ||||| ||||| || || ||||| || || | ||| |
Sbjct 741 TTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTAT 682
Query 178379 ATCCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACA 178438
||||||||| || ||||| ||||| ||||| |||||||| || | | || | ||
Sbjct 681 TAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCA 622
Query 178439 AGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGT 178498
||||||||| | || || ||||| || | | |||||||| || || ||||||||
Sbjct 621 AGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGT 562
Query 178499 CATGCACGAAAGAAATAGCACATAACTTCCCGCTTGATCTTGCAGCAGCTGAG 178551
||||| ||| | ||| || || |||||||| || || || || || | ||||
Sbjct 561 TATGCATGAACGTAAT-GCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 510
>seq180749
Length=15184
Score = 143 bits (158), Expect = 3e-29
Identities = 163/216 (75%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597
||| |||| || || ||||| |||||||| || ||| | || ||||| || || |||||
Sbjct 10955 TACGTCCTCGACGCAGCTGAAGAAGCAGGAATCGATTTGCCTTACTCTTGCCGCTCTGGT 11014
Query 138598 GCATGTTCTACCTGTGCTGGTAAA-TTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTC 138656
||||||||| |||||| |||||| ||| | |||||||| |||||||||||||||
Sbjct 11015 TCATGTTCTAGCTGTGCAGGTAAAGTTAAGTCT-GGAACTGTTGATCAGTCTGACCAGAG 11073
Query 138657 TTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAGCATACCCCAC 138716
|||||| |||||||| || ||||| | ||||||| | | ||||| | || || || ||
Sbjct 11074 TTTCCTCGATGATGATCAGATTGCTGAAGGATTTGTTCTCACTTGTGCTGCTTATCCTAC 11133
Query 138717 ATCCGATTGTATAATTGAAACTGAAAAAGAGGACGA 138752
|| ||| || ||||| || | ||||| || ||
Sbjct 11134 CTCTGATGTTACCATTGAGACCCACAAAGAAGAAGA 11169
>seq218717
Length=448
Score = 136 bits (150), Expect = 5e-27
Identities = 165/221 (75%), Gaps = 3/221 (1%)
Strand=Plus/Minus
Query 177885 TATATGGGACGTGAGTGGGAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGTT 177944
|||||| | ||||||||||||||| | |||| |||||||| || ||||| ||||
Sbjct 226 TATATGAGTCGTGAGTGGGAACTTAGTTTATGTCTGGGTATGCGTCCTTGGATTGTTGTT 167
Query 177945 GCATACTCTGCACCTGTT-GCAGCAGCATCCGCAGTCTTTCTAG-TCTATCCTTTCGGTC 178002
||||| || || |||||| ||||| || | || ||||| | | ||||| | ||||
Sbjct 166 GCATATTCAGCTCCTGTTTGCAGCTGCTATTGTTGT-TTTCTTGATTTATCCAATTGGTC 108
Query 178003 AAGGTTCATTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTG 178062
|||| || | ||| ||||||||| || |||||| ||||||| |||| || |||
Sbjct 107 AAGGAAGTTTTTTTAATGGTATGCCTCTAGGAATCTCTTGTACTTTCAACTTTATTATTG 48
Query 178063 TATTCCAAGCAGAACACAATATCCTTATGCACCCGTTCCAC 178103
||||||| || || ||||| || ||||||||||| || |||
Sbjct 47 TATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCAC 7
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 603644059568480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |