Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_023688.1
Length=222006
Score E
Sequences producing significant alignments: (Bits) Value
seq26767 154 2e-32
seq249645 140 5e-28
seq158858 87.8 3e-12
seq117240 84.2 3e-11
>seq26767
Length=1149
Score = 154 bits (170), Expect = 2e-32
Identities = 277/405 (68%), Gaps = 0/405 (0%)
Strand=Plus/Plus
Query 32808 CATTTTATTGATTTGGATACCGTAGTCCAAGTGTCTGATTCGATTTTCTTCCACACCCTT 32867
|| |||||| ||||| | | || || | ||| | | || ||||||||| | ||| |
Sbjct 36 CAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCCCCT 95
Query 32868 GTTGTTCTTGAGCACAAGGATTTTTTCAACTTCAAGATGCCACATCGGATAATACAGAGT 32927
|| || || | || | | |||||| ||||| |||||| || |||||| | | |||
Sbjct 96 ATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATATAGT 155
Query 32928 AGCAGCGCCACCACGTACACCGCCCTGTGAGCAGCTTTTTACCGCAGTCTGAAAGTATTT 32987
|| || ||||| | || || || || || ||| |||||| ||| | ||||| | |||
Sbjct 156 TGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATGTTT 215
Query 32988 CCAGAATGGGATAATACCAGTATGACGAACCTCGCCAGAACGAATTCTAGAGCCTTCAGC 33047
| || || ||| |||||||||| | |||||| | ||| | ||| | ||
Sbjct 216 ATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTACTGC 275
Query 33048 ACGAATAGCACCACCATTGATACCGATACCAGCTCTCTTGCTGATATAGTCAACGATAGA 33107
|||||| ||| |||| ||||| || || |||| | | ||| | || |||||
Sbjct 276 ACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAATAGA 335
Query 33108 ACTAGCGGTTGCGTTAATGCTATCGAGTTCATCACCACTTTCAATCTTGACGCATGAGCT 33167
||||| || |||||||| ||| || | |||| ||| |||||| || ||||||||
Sbjct 336 ACTAGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACATGAGCT 395
Query 33168 AAACTGACGGGTCGGAGTACGAACACCAGCCAGAATAGGAGTCGG 33212
||| || || || ||||| | ||| |||| || ||| || |||||
Sbjct 396 AAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGG 440
>seq249645
Length=476466
Score = 140 bits (154), Expect = 5e-28
Identities = 267/392 (68%), Gaps = 6/392 (2%)
Strand=Plus/Minus
Query 32827 CCGTAGTCCAAGTGTCTGATTCGATTTTCTTCCACACCCTTGTTGTTCTTGAGCACAAGG 32886
|||||||||| || | || || || ||||| ||||| ||| || ||||| || ||
Sbjct 264944 CCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTTTTGAGTACCAGT 264885
Query 32887 ATTTTTTCAACTTCAAGATGCCACATCGGATAATACAGAGTAGCAGCGCCACCACGTACA 32946
| | |||||||| | |||||| | || || ||| || ||||| || ||||||||
Sbjct 264884 AATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGCACCGCCACGTACG 264825
Query 32947 CCGCCCTGTGAGCAGCTTTTTACCGCAGTCTGAAAGTATTTCCAGAATGGGATAATACCA 33006
|| || |||||||||| ||| || || || || || |||| | || || ||| |||
Sbjct 264824 CCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAAAGGAATACAGCCA 264765
Query 33007 GTATGACGAACCTCGCCAGAACGAATTCTAGAGCCTTCA---GCACGAATAGCACCACCA 33063
||||| | | || || ||| || || || || ||||| ||| ||| |
Sbjct 264764 GTATGCTGTGCTTCACCGCCACGGAT---AGGGCTACCAAGGGCACGGATACGACCTGCG 264708
Query 33064 TTGATACCGATACCAGCTCTCTTGCTGATATAGTCAACGATAGAACTAGCGGTTGCGTTA 33123
||||| ||||||||||| | || | |||| ||||| | |||| ||| |||||
Sbjct 264707 TTGATGCCGATACCAGCACGCTGTGACACATAGCGTACGATGGCGCTAGTGGTGGCGTTG 264648
Query 33124 ATGCTATCGAGTTCATCACCACTTTCAATCTTGACGCATGAGCTAAACTGACGGGTCGGA 33183
|| || | |||||||| ||| || |||||| |||||||||||||| | ||
Sbjct 264647 ATAGAGTCTAAGCTATCACCACATTCGATTAAGACGCACGAGCTAAACTGACGCGATGGC 264588
Query 33184 GTACGAACACCAGCCAGAATAGGAGTCGGAAG 33215
||||| ||||| | || || || || || ||
Sbjct 264587 GTACGCACACCTGACATGATTGGCGTTGGTAG 264556
>seq158858
Length=235449
Score = 87.8 bits (96), Expect = 3e-12
Identities = 83/105 (79%), Gaps = 2/105 (2%)
Strand=Plus/Minus
Query 93188 GACTCGAACCGACATGCCCGGAGGCGCTAGATCCTAAATCTAGTGTGACTGCCAATTTCA 93247
||||||||| || ||| || || ||||||||||| ||||| ||| ||||||||| ||
Sbjct 161330 GACTCGAACTCTCACGCC--GAAGCACTAGATCCTAAGTCTAGCGTGTCTGCCAATTCCA 161273
Query 93248 CCACATCCGCATTATTTGGAGGAGAAAGTGGGATTCGAACCCACG 93292
|||| ||||||| |||||| || || ||||||||||| |||
Sbjct 161272 CCACGTCCGCATAATTTGGCTCTGACGGTAGGATTCGAACCTACG 161228
>seq117240
Length=334284
Score = 84.2 bits (92), Expect = 3e-11
Identities = 69/83 (83%), Gaps = 1/83 (1%)
Strand=Plus/Plus
Query 93934 AAAAATG-CGGGGGTAACTGGGCTCGAACCAGTGCATGACGGAATCAAAGTCCGTTGCCT 93992
||||||| | |||||| |||| ||||||||| | ||| | | |||||| | | |||||
Sbjct 324979 AAAAATGGCAGGGGTAGCTGGACTCGAACCAACGGATGTCAGGATCAAAACCTGATGCCT 325038
Query 93993 TACCAACTTGGCTATACCCCTAT 94015
|||||||||||||||||||||||
Sbjct 325039 TACCAACTTGGCTATACCCCTAT 325061
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 707918578790080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |