Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_023688.1 Length=222006 Score E Sequences producing significant alignments: (Bits) Value seq26767 154 2e-32 seq249645 140 5e-28 seq158858 87.8 3e-12 seq117240 84.2 3e-11 >seq26767 Length=1149 Score = 154 bits (170), Expect = 2e-32 Identities = 277/405 (68%), Gaps = 0/405 (0%) Strand=Plus/Plus Query 32808 CATTTTATTGATTTGGATACCGTAGTCCAAGTGTCTGATTCGATTTTCTTCCACACCCTT 32867 || |||||| ||||| | | || || | ||| | | || ||||||||| | ||| | Sbjct 36 CAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCCCCT 95 Query 32868 GTTGTTCTTGAGCACAAGGATTTTTTCAACTTCAAGATGCCACATCGGATAATACAGAGT 32927 || || || | || | | |||||| ||||| |||||| || |||||| | | ||| Sbjct 96 ATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATATAGT 155 Query 32928 AGCAGCGCCACCACGTACACCGCCCTGTGAGCAGCTTTTTACCGCAGTCTGAAAGTATTT 32987 || || ||||| | || || || || || ||| |||||| ||| | ||||| | ||| Sbjct 156 TGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATGTTT 215 Query 32988 CCAGAATGGGATAATACCAGTATGACGAACCTCGCCAGAACGAATTCTAGAGCCTTCAGC 33047 | || || ||| |||||||||| | |||||| | ||| | ||| | || Sbjct 216 ATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTACTGC 275 Query 33048 ACGAATAGCACCACCATTGATACCGATACCAGCTCTCTTGCTGATATAGTCAACGATAGA 33107 |||||| ||| |||| ||||| || || |||| | | ||| | || ||||| Sbjct 276 ACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAATAGA 335 Query 33108 ACTAGCGGTTGCGTTAATGCTATCGAGTTCATCACCACTTTCAATCTTGACGCATGAGCT 33167 ||||| || |||||||| ||| || | |||| ||| |||||| || |||||||| Sbjct 336 ACTAGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACATGAGCT 395 Query 33168 AAACTGACGGGTCGGAGTACGAACACCAGCCAGAATAGGAGTCGG 33212 ||| || || || ||||| | ||| |||| || ||| || ||||| Sbjct 396 AAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGG 440 >seq249645 Length=476466 Score = 140 bits (154), Expect = 5e-28 Identities = 267/392 (68%), Gaps = 6/392 (2%) Strand=Plus/Minus Query 32827 CCGTAGTCCAAGTGTCTGATTCGATTTTCTTCCACACCCTTGTTGTTCTTGAGCACAAGG 32886 |||||||||| || | || || || ||||| ||||| ||| || ||||| || || Sbjct 264944 CCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTTTTGAGTACCAGT 264885 Query 32887 ATTTTTTCAACTTCAAGATGCCACATCGGATAATACAGAGTAGCAGCGCCACCACGTACA 32946 | | |||||||| | |||||| | || || ||| || ||||| || |||||||| Sbjct 264884 AATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGCACCGCCACGTACG 264825 Query 32947 CCGCCCTGTGAGCAGCTTTTTACCGCAGTCTGAAAGTATTTCCAGAATGGGATAATACCA 33006 || || |||||||||| ||| || || || || || |||| | || || ||| ||| Sbjct 264824 CCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAAAGGAATACAGCCA 264765 Query 33007 GTATGACGAACCTCGCCAGAACGAATTCTAGAGCCTTCA---GCACGAATAGCACCACCA 33063 ||||| | | || || ||| || || || || ||||| ||| ||| | Sbjct 264764 GTATGCTGTGCTTCACCGCCACGGAT---AGGGCTACCAAGGGCACGGATACGACCTGCG 264708 Query 33064 TTGATACCGATACCAGCTCTCTTGCTGATATAGTCAACGATAGAACTAGCGGTTGCGTTA 33123 ||||| ||||||||||| | || | |||| ||||| | |||| ||| ||||| Sbjct 264707 TTGATGCCGATACCAGCACGCTGTGACACATAGCGTACGATGGCGCTAGTGGTGGCGTTG 264648 Query 33124 ATGCTATCGAGTTCATCACCACTTTCAATCTTGACGCATGAGCTAAACTGACGGGTCGGA 33183 || || | |||||||| ||| || |||||| |||||||||||||| | || Sbjct 264647 ATAGAGTCTAAGCTATCACCACATTCGATTAAGACGCACGAGCTAAACTGACGCGATGGC 264588 Query 33184 GTACGAACACCAGCCAGAATAGGAGTCGGAAG 33215 ||||| ||||| | || || || || || || Sbjct 264587 GTACGCACACCTGACATGATTGGCGTTGGTAG 264556 >seq158858 Length=235449 Score = 87.8 bits (96), Expect = 3e-12 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 93188 GACTCGAACCGACATGCCCGGAGGCGCTAGATCCTAAATCTAGTGTGACTGCCAATTTCA 93247 ||||||||| || ||| || || ||||||||||| ||||| ||| ||||||||| || Sbjct 161330 GACTCGAACTCTCACGCC--GAAGCACTAGATCCTAAGTCTAGCGTGTCTGCCAATTCCA 161273 Query 93248 CCACATCCGCATTATTTGGAGGAGAAAGTGGGATTCGAACCCACG 93292 |||| ||||||| |||||| || || ||||||||||| ||| Sbjct 161272 CCACGTCCGCATAATTTGGCTCTGACGGTAGGATTCGAACCTACG 161228 >seq117240 Length=334284 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/83 (83%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 93934 AAAAATG-CGGGGGTAACTGGGCTCGAACCAGTGCATGACGGAATCAAAGTCCGTTGCCT 93992 ||||||| | |||||| |||| ||||||||| | ||| | | |||||| | | ||||| Sbjct 324979 AAAAATGGCAGGGGTAGCTGGACTCGAACCAACGGATGTCAGGATCAAAACCTGATGCCT 325038 Query 93993 TACCAACTTGGCTATACCCCTAT 94015 ||||||||||||||||||||||| Sbjct 325039 TACCAACTTGGCTATACCCCTAT 325061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707918578790080