Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_023693.1 Length=148612 Score E Sequences producing significant alignments: (Bits) Value seq111334 230 2e-55 seq204058 167 2e-36 >seq111334 Length=48914 Score = 230 bits (254), Expect = 2e-55 Identities = 534/791 (68%), Gaps = 27/791 (3%) Strand=Plus/Plus Query 26006 TTTTTAAAAGCAATCTCTTCCAGGCATGCAACCTTCATACCTTGTTGCTTCTCTATTGCA 26065 |||||||| ||||| ||||| | || || || || | || ||| || || || | Sbjct 28566 TTTTTAAATGCAATTTCTTCTAAACAGGCTACTTTTAAACTCTGTCTTTTTTCAATCGTT 28625 Query 26066 TGAACAAATTGAGATGCTTCCA-TAA-GACTTTCATGTGTTCCTGTATCCAGCCAAGTGA 26123 | | |||||| | |||||| | ||| || ||| ||||| |||||||||||||| | Sbjct 28626 TCTATAAATTGTGCTGCTTCTAATAATGA--TTCGTGTGTGCCTGTATCCAGCCATGCAT 28683 Query 26124 AACCTCTTCCTAGTT-TACAGACACGTAAAG-TCTTTTCTTTCCAGTACATCTCATTTAT 26181 | |||||||| | | | || || ||| || |||| | || | ||||| Sbjct 28684 AGCCTCTTCCCAATAATTCA-ACTTCTAATTCTCCCATCTTAAGA-TATTCTTTGTTTAT 28741 Query 26182 ATCCGTAATCTCTAACTCCCCTCTAGCAGAAGGTTTAACGCTCTTAGCTTTCTGTATAAC 26241 ||| || |||||||| || || | | ||| ||||| | | | || ||| | | ||| || Sbjct 28742 ATCTGTTATCTCTAATTCTCCACGACTAGACGGTTTTATGGTTTTTGCTATTTCTATCAC 28801 Query 26242 AGAATTATCGTAAAAGTACAAGCCTGTGATTGCGTAGTTGCtttttggtgtttttggttt 26301 | ||||| ||||| |||| || || | ||| ||||| ||||||| ||||| || Sbjct 28802 ACGTTTATCATAAAAATACAGACCAGTTACTGCATAGTTTGATTTTGGTTCCTTTGGCTT 28861 Query 26302 ttCTTCAATACTCACCACTGTACCTTCAGAATCAAACTCAACAACACCAAATCTTTCAGG 26361 ||| ||| | | || || |||||||||||| || || ||||| | || || Sbjct 28862 TTCCATGATATTAATTACATGCTTTTTAGAATCAAACTCTACTACTCCAAAACGCTCTGG 28921 Query 26362 ATCATTTACGTGATACCCAAAGATATTAGCTCCACCATTCTTTTCAATATGTTCTT-TAG 26420 |||||| || | ||| ||||| | ||||||| | ||||| | || | | || ||| Sbjct 28922 ATCATTGACATAATAACCAAAAACTGTAGCTCCCCTTTTCTTCTTAACAGCCTTTTCTAG 28981 Query 26421 CAGAATCTAAAATGCTA--CCAAAACTCTGACCAAAGAATAAATTATCACCTAGCACAAG 26478 | | ||| | || ||| |||||| | || | |||||| || || | | Sbjct 28982 TA-ATTCT-----GTTAGTCCA------TGACCATAAAAGATATTATCGCCAAGAATTAA 29029 Query 26479 TGCTACAGAATCTTCACCAATAAAGTTCTCACCAATAATAAACGCTTCTGCTAAACCTTT 26538 |||||| ||| | |||||||| | |||| | || ||||| |||| ||||| ||||| Sbjct 29030 AGCTACATTATCATTTCCAATAAACTCCTCAGCGATTATAAATGCTTGTGCTATACCTTC 29089 Query 26539 TGGGCTATCCTGTATTGCATACTGTAGGGAAATACCAAAAGAAGAACCATCACCTAGAAG 26598 ||| | ||| | | ||| || | ||| ||| | |||||||||||| || Sbjct 29090 TGGATAAGGCTGAACAGTATATGAAAGAGTAATTCCATATTTTGAACCATCACCT--AAC 29147 Query 26599 ATTT--ACAAAATTAATTTGATCTTCTGGTGTTGTAATTATTAGTATTTCCCTAATTCCA 26656 |||| |||| ||| | ||||| |||||||| ||| |||||||| || || || || Sbjct 29148 ATTTGCTCAAATTTATTAATATCTTGTGGTGTTGAAATAATTAGTATCTCTCTTATCCCC 29207 Query 26657 GAAAGCATTAGGACAGAGAGTGGATAATAAATCATAGGTTTATCGTAAATTGGTAATAGT 26716 | | |||||| || || | |||||||||||||| |||||||| || || ||||||| | Sbjct 29208 GCCAACATTAGTACTGATAAAGGATAATAAATCATGGGTTTATCATAGATAGGTAATAAT 29267 Query 26717 TGTTTACTAACCCCTTTAGTAACTGGGTAAAGCCTTGTTCCACTACCACCTGCTAAGATA 26776 || || || || |||| ||||| | || || || || |||||||| | || Sbjct 29268 TGCTTTGATACAATTTGGGTAAGGGGGTACAATCTAGTACCGCTCCCACCTGCAAGAATG 29327 Query 26777 ATACCTTTCAT 26787 ||||||||||| Sbjct 29328 ATACCTTTCAT 29338 >seq204058 Length=43643 Score = 167 bits (184), Expect = 2e-36 Identities = 458/695 (66%), Gaps = 15/695 (2%) Strand=Plus/Plus Query 26095 TTCATGTGTTCCTGTATCCAGCCAAGTGAAACCTCTTCCTAGTTTACAGACACGTAAAGT 26154 |||||||||||||||||| ||||| | || || | || ||| ||||| || | Sbjct 23738 TTCATGTGTTCCTGTATCGAGCCATGCAAATCCGCGACCGAGTAACTCAACACGCAAGGA 23797 Query 26155 CTTTTCTTTCCAGTA-CATCTCATTTATATCCGTAATCTCTAACTCCCCTCTAGCAGAAG 26213 || |||| ||| ||| | |||| ||| ||||| || | || ||||| | ||||| Sbjct 23798 ATTGTCTTCAAGGTAGCATTTG-TTTAGATCTGTAATTTCGAGTTCTCCTCTTGGAGAAG 23856 Query 26214 GTTT-AACGCTCTTAGCTTTCTGTATAACAGAATTATCGTAAAAGTACAAGCCTGTGATT 26272 |||| |||| | ||||| | | ||| |||||| ||||| || | || || || Sbjct 23857 GTTTTAACGAT-TTAGCAAAATCAACAACTCGATTATCATAAAAATAAAGTCCAGTAATA 23915 Query 26273 GCGTAGTTGCtttttggtgtttttggtttttCTTCAATACTCACCACTGTACCTTCAGAA 26332 |||||||| || || | || ||||||||||| || | || | | | Sbjct 23916 GCGTAGTTACTCTTAGCGACTTCAGGTTTTTCTTCGATTGAAATAACGTTCTGATTATCG 23975 Query 26333 TCAAACTCAACAACACCAAATCTTTCAGGATCATTTACGTGATACCCAAAGATATTAGCT 26392 ||||| |||||||| ||||| | ||| ||||| | || ||||| ||||| | | | | | Sbjct 23976 TCAAATTCAACAACGCCAAAACGTTCTGGATCGTGAACATGATAACCAAAAACAGTTGAT 24035 Query 26393 CCACCATTCTTTTCAATATGTT-CTTTAGCAGAATCTAAAATGCTACCAAAACTCTGACC 26451 || ||||||| || | | | |||| | ||| | | ||||| ||||| Sbjct 24036 CC----TTCTTTTGAAGAAGCTGCTTTT------TTTAATAAGTCCGTAAAACCATGACC 24085 Query 26452 AAAGAATAAATTATCACCTAGCACAAGTGCTACAGAATCTTCACCAATAAAGTTCTCACC 26511 | || | | || || ||||| ||||| |||| || || | ||||||||| | || || Sbjct 24086 ATAGTAAATGTTGTCTCCTAGTACAAGGGCTATTGAGTCATTACCAATAAATTCTTCTCC 24145 Query 26512 AATAATAAACGCTTCTGCTAAACCTTTTGGGCTATCCTGTATTGCATACTGTAGGGAAAT 26571 ||| ||||| |||| || | ||| | || | || ||| |||| || ||||| Sbjct 24146 AATTATAAATGCTTGAGCAAGACCATCAGGTGATTTTTGAATTTCATAAGATAATGAAAT 24205 Query 26572 ACCAAAAGAAGAACCATCACCTAGAAGATTTACAAAATTAATTTGATCTTCTGGTGTTGT 26631 || | | |||||||||| | | | ||||| | ||| ||||| |||| Sbjct 24206 TCCGAGTTCACTTCCATCACCTAATAATTGTTCAAAACGTGGTGTATCCTCTGGAGTTGA 24265 Query 26632 AATTATTAGTATTTCCCTAATTCCAGAAAGCATTAGGACAGAGAGTGGATAATAAATCAT 26691 ||| |||| |||||| |||| || | | ||||| ||| | || ||| ||||||| Sbjct 24266 AATGATTAAGATTTCCTTAATACCTGCTAACATTAACGTAGACATCGGGTAAAAAATCAT 24325 Query 26692 AGGTTTATCGTAAATTGGTAATAGTTGTTTACTAACCCCTTTAGTAACTGGGTAAAGCCT 26751 |||||||| || | ||| | | ||||| | || || | ||| || | || Sbjct 24326 TGGTTTATCATATACTGGAAGCAACTGTTTTGAGATAGACTTTGTTAGTGGATATAATCT 24385 Query 26752 TGTTCCACTACCACCTGCTAAGATAATACCTTTCA 26786 ||||||||||| ||||| || ||||||||||||| Sbjct 24386 AGTTCCACTACCTCCTGCCAAAATAATACCTTTCA 24420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473842296063360