Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_023693.1
Length=148612
Score E
Sequences producing significant alignments: (Bits) Value
seq111334 230 2e-55
seq204058 167 2e-36
>seq111334
Length=48914
Score = 230 bits (254), Expect = 2e-55
Identities = 534/791 (68%), Gaps = 27/791 (3%)
Strand=Plus/Plus
Query 26006 TTTTTAAAAGCAATCTCTTCCAGGCATGCAACCTTCATACCTTGTTGCTTCTCTATTGCA 26065
|||||||| ||||| ||||| | || || || || | || ||| || || || |
Sbjct 28566 TTTTTAAATGCAATTTCTTCTAAACAGGCTACTTTTAAACTCTGTCTTTTTTCAATCGTT 28625
Query 26066 TGAACAAATTGAGATGCTTCCA-TAA-GACTTTCATGTGTTCCTGTATCCAGCCAAGTGA 26123
| | |||||| | |||||| | ||| || ||| ||||| |||||||||||||| |
Sbjct 28626 TCTATAAATTGTGCTGCTTCTAATAATGA--TTCGTGTGTGCCTGTATCCAGCCATGCAT 28683
Query 26124 AACCTCTTCCTAGTT-TACAGACACGTAAAG-TCTTTTCTTTCCAGTACATCTCATTTAT 26181
| |||||||| | | | || || ||| || |||| | || | |||||
Sbjct 28684 AGCCTCTTCCCAATAATTCA-ACTTCTAATTCTCCCATCTTAAGA-TATTCTTTGTTTAT 28741
Query 26182 ATCCGTAATCTCTAACTCCCCTCTAGCAGAAGGTTTAACGCTCTTAGCTTTCTGTATAAC 26241
||| || |||||||| || || | | ||| ||||| | | | || ||| | | ||| ||
Sbjct 28742 ATCTGTTATCTCTAATTCTCCACGACTAGACGGTTTTATGGTTTTTGCTATTTCTATCAC 28801
Query 26242 AGAATTATCGTAAAAGTACAAGCCTGTGATTGCGTAGTTGCtttttggtgtttttggttt 26301
| ||||| ||||| |||| || || | ||| ||||| ||||||| ||||| ||
Sbjct 28802 ACGTTTATCATAAAAATACAGACCAGTTACTGCATAGTTTGATTTTGGTTCCTTTGGCTT 28861
Query 26302 ttCTTCAATACTCACCACTGTACCTTCAGAATCAAACTCAACAACACCAAATCTTTCAGG 26361
||| ||| | | || || |||||||||||| || || ||||| | || ||
Sbjct 28862 TTCCATGATATTAATTACATGCTTTTTAGAATCAAACTCTACTACTCCAAAACGCTCTGG 28921
Query 26362 ATCATTTACGTGATACCCAAAGATATTAGCTCCACCATTCTTTTCAATATGTTCTT-TAG 26420
|||||| || | ||| ||||| | ||||||| | ||||| | || | | || |||
Sbjct 28922 ATCATTGACATAATAACCAAAAACTGTAGCTCCCCTTTTCTTCTTAACAGCCTTTTCTAG 28981
Query 26421 CAGAATCTAAAATGCTA--CCAAAACTCTGACCAAAGAATAAATTATCACCTAGCACAAG 26478
| | ||| | || ||| |||||| | || | |||||| || || | |
Sbjct 28982 TA-ATTCT-----GTTAGTCCA------TGACCATAAAAGATATTATCGCCAAGAATTAA 29029
Query 26479 TGCTACAGAATCTTCACCAATAAAGTTCTCACCAATAATAAACGCTTCTGCTAAACCTTT 26538
|||||| ||| | |||||||| | |||| | || ||||| |||| ||||| |||||
Sbjct 29030 AGCTACATTATCATTTCCAATAAACTCCTCAGCGATTATAAATGCTTGTGCTATACCTTC 29089
Query 26539 TGGGCTATCCTGTATTGCATACTGTAGGGAAATACCAAAAGAAGAACCATCACCTAGAAG 26598
||| | ||| | | ||| || | ||| ||| | |||||||||||| ||
Sbjct 29090 TGGATAAGGCTGAACAGTATATGAAAGAGTAATTCCATATTTTGAACCATCACCT--AAC 29147
Query 26599 ATTT--ACAAAATTAATTTGATCTTCTGGTGTTGTAATTATTAGTATTTCCCTAATTCCA 26656
|||| |||| ||| | ||||| |||||||| ||| |||||||| || || || ||
Sbjct 29148 ATTTGCTCAAATTTATTAATATCTTGTGGTGTTGAAATAATTAGTATCTCTCTTATCCCC 29207
Query 26657 GAAAGCATTAGGACAGAGAGTGGATAATAAATCATAGGTTTATCGTAAATTGGTAATAGT 26716
| | |||||| || || | |||||||||||||| |||||||| || || ||||||| |
Sbjct 29208 GCCAACATTAGTACTGATAAAGGATAATAAATCATGGGTTTATCATAGATAGGTAATAAT 29267
Query 26717 TGTTTACTAACCCCTTTAGTAACTGGGTAAAGCCTTGTTCCACTACCACCTGCTAAGATA 26776
|| || || || |||| ||||| | || || || || |||||||| | ||
Sbjct 29268 TGCTTTGATACAATTTGGGTAAGGGGGTACAATCTAGTACCGCTCCCACCTGCAAGAATG 29327
Query 26777 ATACCTTTCAT 26787
|||||||||||
Sbjct 29328 ATACCTTTCAT 29338
>seq204058
Length=43643
Score = 167 bits (184), Expect = 2e-36
Identities = 458/695 (66%), Gaps = 15/695 (2%)
Strand=Plus/Plus
Query 26095 TTCATGTGTTCCTGTATCCAGCCAAGTGAAACCTCTTCCTAGTTTACAGACACGTAAAGT 26154
|||||||||||||||||| ||||| | || || | || ||| ||||| || |
Sbjct 23738 TTCATGTGTTCCTGTATCGAGCCATGCAAATCCGCGACCGAGTAACTCAACACGCAAGGA 23797
Query 26155 CTTTTCTTTCCAGTA-CATCTCATTTATATCCGTAATCTCTAACTCCCCTCTAGCAGAAG 26213
|| |||| ||| ||| | |||| ||| ||||| || | || ||||| | |||||
Sbjct 23798 ATTGTCTTCAAGGTAGCATTTG-TTTAGATCTGTAATTTCGAGTTCTCCTCTTGGAGAAG 23856
Query 26214 GTTT-AACGCTCTTAGCTTTCTGTATAACAGAATTATCGTAAAAGTACAAGCCTGTGATT 26272
|||| |||| | ||||| | | ||| |||||| ||||| || | || || ||
Sbjct 23857 GTTTTAACGAT-TTAGCAAAATCAACAACTCGATTATCATAAAAATAAAGTCCAGTAATA 23915
Query 26273 GCGTAGTTGCtttttggtgtttttggtttttCTTCAATACTCACCACTGTACCTTCAGAA 26332
|||||||| || || | || ||||||||||| || | || | | |
Sbjct 23916 GCGTAGTTACTCTTAGCGACTTCAGGTTTTTCTTCGATTGAAATAACGTTCTGATTATCG 23975
Query 26333 TCAAACTCAACAACACCAAATCTTTCAGGATCATTTACGTGATACCCAAAGATATTAGCT 26392
||||| |||||||| ||||| | ||| ||||| | || ||||| ||||| | | | | |
Sbjct 23976 TCAAATTCAACAACGCCAAAACGTTCTGGATCGTGAACATGATAACCAAAAACAGTTGAT 24035
Query 26393 CCACCATTCTTTTCAATATGTT-CTTTAGCAGAATCTAAAATGCTACCAAAACTCTGACC 26451
|| ||||||| || | | | |||| | ||| | | ||||| |||||
Sbjct 24036 CC----TTCTTTTGAAGAAGCTGCTTTT------TTTAATAAGTCCGTAAAACCATGACC 24085
Query 26452 AAAGAATAAATTATCACCTAGCACAAGTGCTACAGAATCTTCACCAATAAAGTTCTCACC 26511
| || | | || || ||||| ||||| |||| || || | ||||||||| | || ||
Sbjct 24086 ATAGTAAATGTTGTCTCCTAGTACAAGGGCTATTGAGTCATTACCAATAAATTCTTCTCC 24145
Query 26512 AATAATAAACGCTTCTGCTAAACCTTTTGGGCTATCCTGTATTGCATACTGTAGGGAAAT 26571
||| ||||| |||| || | ||| | || | || ||| |||| || |||||
Sbjct 24146 AATTATAAATGCTTGAGCAAGACCATCAGGTGATTTTTGAATTTCATAAGATAATGAAAT 24205
Query 26572 ACCAAAAGAAGAACCATCACCTAGAAGATTTACAAAATTAATTTGATCTTCTGGTGTTGT 26631
|| | | |||||||||| | | | ||||| | ||| ||||| ||||
Sbjct 24206 TCCGAGTTCACTTCCATCACCTAATAATTGTTCAAAACGTGGTGTATCCTCTGGAGTTGA 24265
Query 26632 AATTATTAGTATTTCCCTAATTCCAGAAAGCATTAGGACAGAGAGTGGATAATAAATCAT 26691
||| |||| |||||| |||| || | | ||||| ||| | || ||| |||||||
Sbjct 24266 AATGATTAAGATTTCCTTAATACCTGCTAACATTAACGTAGACATCGGGTAAAAAATCAT 24325
Query 26692 AGGTTTATCGTAAATTGGTAATAGTTGTTTACTAACCCCTTTAGTAACTGGGTAAAGCCT 26751
|||||||| || | ||| | | ||||| | || || | ||| || | ||
Sbjct 24326 TGGTTTATCATATACTGGAAGCAACTGTTTTGAGATAGACTTTGTTAGTGGATATAATCT 24385
Query 26752 TGTTCCACTACCACCTGCTAAGATAATACCTTTCA 26786
||||||||||| ||||| || |||||||||||||
Sbjct 24386 AGTTCCACTACCTCCTGCCAAAATAATACCTTTCA 24420
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 473842296063360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |