Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_023717.1 Length=151924 Score E Sequences producing significant alignments: (Bits) Value seq249645 156 4e-33 seq252826 86.0 6e-12 >seq249645 Length=476466 Score = 156 bits (172), Expect = 4e-33 Identities = 241/344 (70%), Gaps = 0/344 (0%) Strand=Plus/Minus Query 122018 GATGTTGCGGATGATGTGGGTGTACGAACGAGAGTGAATAGTCTCACTGAACGCCCAAGT 122077 ||| || || ||||| || || || || |||||||| |||||| ||||| ||| || Sbjct 268574 GATATTACGAATGATATGCGTATAGCTGCGTGAGTGAATGGTCTCAGAGAACGACCATGT 268515 Query 122078 CTCCACCCAAGTTTCCAGGGTGGTGTCGGATACGATCGGCAGAAGAACTGCGTTCGGGCC 122137 ||| | ||| || || || | | || || | ||||| || || |||| || | Sbjct 268514 CTCAATCCACGTCTCAAGCTCAGGGATAGACACTAGCGGCAATAGTACCACGTTTGGACT 268455 Query 122138 ACGGCCCTGTACAGAGTCCAGAAGGATCTGATACTTCAGGTTGCTGATGAAGATGTGCTT 122197 ||| || || | |||||| || ||| |||||||||| |||||||| | || ||||||| Sbjct 268454 ACGACCTTGGATAGAGTCGAGTAGGGTCTGATACTTAAGGTTGCTCAAAAATATGTGCTG 268395 Query 122198 CTCGTGATCCGGAAGATTCATGTAGTCAATTCGGTCACGGGTCACGTTCACCTCTTCCGG 122257 |||||| | || || | | || || ||||| || | ||| | || ||||| || Sbjct 268394 CTCGTGGGATGATAGGTTGCTAAAATCCATACGGTCGCGTGACACATCAACTTCTTCTGG 268335 Query 122258 ACGCCAGAAGAATGCCAGTTGCTTTTCGATCAGCTTTTCGAACTTAGCGTGTTTTTGCTG 122317 |||||| ||||| | || |||||||| |||| | || || | | ||||||||| || Sbjct 268334 ACGCCAAAAGAACGACAACTGCTTTTCAATCAATTGCTCAAAGATTGGGTGTTTTTGTTG 268275 Query 122318 GTCATAACGAGAAACGTTCGGCGTCTCACCGAGGAACATCGGCT 122361 |||||| || | ||||| | || ||| | ||||||||||| Sbjct 268274 GTCATAGCGCGCTACGTTGACGGGCTGACCAAAGAACATCGGCT 268231 Score = 111 bits (122), Expect = 2e-19 Identities = 248/365 (68%), Gaps = 8/365 (2%) Strand=Plus/Minus Query 121479 CCAACTGCTCGCATACGCAGGTCTGTGATGTAGTCGATGTATCCGTCCAGCATCCCCTTG 121538 || || ||| |||||| | || |||||||| ||||| ||| | ||| || | ||| Sbjct 269146 CCGACCGCTTCCATACGTAAGTTAGTGATGTATTCGATATATTGGCACAGAATGTCTTTG 269087 Query 121539 TTCAGACCGATCATGGAACCATCTTTGAACAGGAAGCTGCCCCAATCCTTCTCCTGCACA 121598 || ||||| ||||| || |||||||||||||| ||| |||| || || || ||| || Sbjct 269086 TTTAGACCAATCATCGAGCCATCTTTGAACAGATAGCCTGCCCATTCTTTTTCTTGCTCA 269027 Query 121599 GAGGCGTCGATAAAGCCCTGTCG-TGCTTCC-TCGTAGCAGTCCTCCGCAA-CACGAGCA 121655 | || | | ||| | || | ||| | ||| | || || | |||| | ||| || Sbjct 269026 GCAGCTTTGCGGAAGA--TTTCAATACTTTCATCGAAACACTCTGCGGCAATCTCGACCA 268969 Query 121656 AA-CAGGTCCCCTTCGTTACCATTTTGCATTTCTCTCAGCATATACTGAGTTCCTGACAA 121714 |||| | || ||| || |||| | ||||||| ||| || |||| ||| Sbjct 268968 TCTCAGGATCGTCACG--ACCGTTGCGCATGAGGTTTAGCATATGCTGCGTACCTGTCAA 268911 Query 121715 ATGCAAGGCTTCATCACGAGCAATTAACTCGATGATGTTGGTATTGCCCAGCATAACCCC 121774 ||||| |||||||||||||| || | || ||||| |||| ||| || ||| | Sbjct 268910 ATGCAGCGCTTCATCACGAGCGATGAGCTTAATGATTTTGGCATTACCTTCCATCAATTT 268851 Query 121775 ACGCTCACCGAAAGCGAAGGAGCAGGCAAAGCTCACGTAGAAGCGGATAGCTTCGAGTGC 121834 |||||| | || || || ||||| ||||| || ||||| || || ||||| || | Sbjct 268850 GCGCTCAGCAAACGCAAACGAGCAAGCAAACGAGACATAGAAACGAATGGCTTCTAGGAC 268791 Query 121835 GTTGA 121839 ||||| Sbjct 268790 GTTGA 268786 Score = 95.1 bits (104), Expect = 1e-14 Identities = 469/729 (64%), Gaps = 31/729 (4%) Strand=Plus/Minus Query 122847 CACGAGGCGGCTCGAACCCGTTCGTTGAGTTGGTGATCTGACTTGACGTCTCGCACGGCA 122906 |||| || ||||||| ||||| || | |||| |||||||||||| || || |||||| Sbjct 265855 CACGTGGTGGCTCGATACCGTTGGTCGCATTGGCGATCTGACTTGAGGTTTCAGACGGCA 265796 Query 122907 TCATGGTTGACAGCGTAGAGTTACGCAGGCCATGGATAGCGATTTGAGAGCGAAGCCATT 122966 ||| || | || |||||||| ||||| || || || ||| | || ||| || Sbjct 265795 TCAAGGCGGTTAGGGTAGAGTTGCGCAGACCGTGCTCAGTGATCTCGCCACGTAGCGTTT 265736 Query 122967 CCCAATCCATCTTCAGTTCAGCGGTGTGGAGA--TTATCCACTTCCTTTTTGTAACGGTC 123024 ||||||| | | ||| || | | ||| ||||||| || |||||||| || Sbjct 265735 CCCAATCTAAATGTAGT--GGCTCTTGGCAGATCTTATCCAAGTCTTTTTTGTACGTATC 265678 Query 123025 AATAGGCAGAATGCCTTGGGAGTATGAGGTTTGGTCATACAGCTTACACTTCCCAAGTTC 123084 ||| |||| || ||||| ||||| | ||| | | || |||| || | || Sbjct 265677 AATCGGCAAGATACCTTGTGAGTAGGTGGTCTCATTGAACGCAGGACACGCGCCTTGCTC 265618 Query 123085 CTTCGCCAGATCCATCGACGCTTCCAGCAGGTAGAACTGGAATGCTTCTGCCAGTTCGTG 123144 || |||| | | ||||||| | || |||||||| |||||||| | || || Sbjct 265617 TTTTGCCAATTTGTTTGACGCTTTTAAGAGATAGAACTGCAATGCTTCAAAC-GT--CTG 265561 Query 123145 AACCG-CATTCGCAGCACGAGG--ATCACTGTACTTCAGTCCACGCTTCGCCAAGTAATA 123201 | | || | ||| || | ||| || || ||| || || |||||||| Sbjct 265560 ATGGGTCAGACCAAGCGCGCTGTCGTCAGAATAGCGCACGCCATTTTTGGCTAAGTAATA 265501 Query 123202 CGCCAGGTTGGTCCAGCCAATACCCAGCGTTCGACGATCCTTAGT---CTTCTCTGCCGC 123258 ||| ||| || ||| | ||| ||||| |||||| | | | || | ||||| Sbjct 265500 CGCATAGTTAATCACGCCTACACCTAGCGTACGACGACGCATGCTGCCGTTTTGAGCCGC 265441 Query 123259 CAGTACCGGGTAGTTCTGGTAGTCCAACAGACGGTCAAGTGAGCGCACCA--AGGTGCGT 123316 || || |||| |||||||| | || ||||| | ||||| | || | || Sbjct 265440 TTTGACGGGATAGTCTTGGTAGTCGAGTAGGGCATCAAGCGCACGCACGATTAGCT-CG- 265383 Query 123317 ACCGGGCCACGGAGGTCTTCCAGAC--TCTCTACCTTGCCGAGGTTGATTGCAGACAGCG 123374 | || | || ||| | ||| | || || || || | ||||| || || |||| Sbjct 265382 GCTGGCTCTTCGATGTC--GCTGACGTTTTCGACTTTACCCAAGTTGACCGCTGATAGCG 265325 Query 123375 TACAAAGTGCAATCTCGCCATCGTCCTCAGGATTTTTGAGGTCATTGA-TCGCGTGAGTA 123433 |||| || || || ||||| | || ||| |||| || || | | || || || Sbjct 265324 TACATAGGGCGATTTCGCCTGCTTCGTCA------TTGATGTTATCAAGTGGCTTG-GTC 265272 Query 123434 GGCAGGGCAATCTCCATGCACAGGTTGGACTGTTTCACCGGGGCCAGTTCTGGATTGAAC 123493 || ||||| || ||||| || ||||| ||||| | ||| || | | | || Sbjct 265271 GGTAGGGCGATTTCCATACATAGGTTTGACTGGCGAATCGGCGCAACCGTCGCGTCAAAT 265212 Query 123494 GGGCTGTTGGTGTTGCAGTGGTCAACGTGCTGAATGTAGATGCGTCCTGT-CTGACTGCG 123552 ||||||| |||||||| || || |||| || |||||||| || ||||| ||| | ||| Sbjct 265211 GGGCTGTGCGTGTTGCAATGATCGACGTTTTGGATGTAGATACGACCTGTGCTGGC-GCG 265153 Query 123553 CTCCTGCAT 123561 ||| ||||| Sbjct 265152 CTCTTGCAT 265144 >seq252826 Length=193385 Score = 86.0 bits (94), Expect = 6e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 148140 TTAGCTCAGTTGGTAGAGCAACTGATTTGTAATCAGAAGGTCGCGGGTTCGAACCCTGCA 148199 ||||||||||||||||||||||||| |||||||||| ||||||| |||||| ||| ||| Sbjct 191953 TTAGCTCAGTTGGTAGAGCAACTGACTTGTAATCAGTAGGTCGCCAGTTCGATCCCGGCA 192012 Query 148200 TCCAGCACCA 148209 | |||||| Sbjct 192013 GTCGGCACCA 192022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 484405293697920