Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_023856.1 Length=152460 Score E Sequences producing significant alignments: (Bits) Value seq249645 96.9 3e-15 >seq249645 Length=476466 Score = 96.9 bits (106), Expect = 3e-15 Identities = 269/405 (66%), Gaps = 6/405 (1%) Strand=Plus/Plus Query 31479 CTTCCAACACCCATCATGTCCGGCGTTCGTACCCCAACCCGCCAATTCAGTTCTTGTGTT 31538 || ||||| || |||||||| || || ||||| ||| | || || || || || || || Sbjct 264556 CTACCAACGCCAATCATGTCAGGTGTGCGTACGCCATCGCGTCAGTTTAGCTCGTGCGTC 264615 Query 31539 CTTATCAAAACCGGTGACACTTTGGACTCAATCAATGCTACAGCCAAAAGTATTGTTGAT 31598 | ||| || ||||| | || ||||| ||||| || || | | || || Sbjct 264616 TTAATCGAATGTGGTGATAGCTTAGACTCTATCAACGCCACCACTAGCGCCATCGTACGC 264675 Query 31599 TATGTATCCAAACGCGCTGGGATCGGATTTGATGTTGGAGCAATTCGTGGCATCGGTAGC 31658 ||||| || | || ||||| ||||| | | | || || |||| | | |||||| Sbjct 264676 TATGTGTCACAGCGTGCTGGTATCGGCATCAACGCAGGTCGTATCCGTGCCCTTGGTAGC 264735 Query 31659 CCTATCCGAAAAGGTGAAATGGTGCACACAGGCCTGGTTCC-TTTCATAAAATATCTGAC 31717 |||||||| |||||| ||| || ||| |||| ||| ||||| | | | Sbjct 264736 CCTATCCGTGGCGGTGAAGCACAGCATACTGGCTGTATTCCTTTTTATAAATTGTTCCAA 264795 Query 31718 TGGGGCATTAAAGTCTTGCTCTCAAGGCGGTATTCGTGGCGGATCAGCAAC-TTGCTATA 31776 || | ||||| | ||||| ||||| || | |||||||| | || || ||| | || Sbjct 264796 ACGGCCGTTAAA-TGCTGCTCACAAGGTGGCGTACGTGGCGGTGCTGCGACGTTGTTCTA 264854 Query 31777 TCCCTATCTGGCATTATCAATTTGA-TGATGTTGTGGTCCTGAAGAACAACCGTGGTCTT 31835 ||| | ||||||| || |||| | || | |||| || || || ||||| ||| || Sbjct 264855 -CCCACTATGGCATTTAGAAGTTGAGTCAT-TACTGGTACTCAAAAATAACCGCGGTGTT 264912 Query 31836 GAAGAGAACCGTGAACGCCGTATCGACTATGGTATTCAGATCAAC 31880 ||||| ||||||| || | ||| ||||| || | ||| | ||| Sbjct 264913 GAAGACAACCGTGTCCGTCATATGGACTACGGCGTACAGTTAAAC 264957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 486114764329600