Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_024121.1 Length=167266 Score E Sequences producing significant alignments: (Bits) Value seq249645 174 2e-38 seq26767 138 1e-27 >seq249645 Length=476466 Score = 174 bits (192), Expect = 2e-38 Identities = 313/450 (70%), Gaps = 22/450 (5%) Strand=Plus/Minus Query 139725 TGCACACCGTAATCCAAGTGACGAATGCGGTTCTCTTCAACGCCTTTGTTGTTTTTCAGA 139784 || || ||||| |||| ||||| | ||||| |||||||| || ||| ||||| || Sbjct 264950 TGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTTTTGAGT 264891 Query 139785 ACAAGCAAGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAACGTCGCTGCACCACCA 139844 || || || |||||||| || ||||| | ||| ||| |||||||||| ||||| ||| Sbjct 264890 ACCAGTAATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGCACCGCCA 264831 Query 139845 CGAACACCACCTTGAGAACAGGATTTAACCGCAGTCTGGAAGTGTTTCCAGAAAGGAATT 139904 || || |||||||| || ||| ||||||| || || ||||| ||| | |||||||| Sbjct 264830 CGTACGCCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAAAGGAATA 264771 Query 139905 ACGCCAGTGTGTTTGACTTCACCGAAACCAATTTTTGAGCCTTCA---GCTCGGATTCGA 139961 |||||| || | |||||||| || || | || || || ||||| ||| Sbjct 264770 CAGCCAGTATGCTGTGCTTCACCGCCACGGATA---GGGCTACCAAGGGCACGGATACGA 264714 Query 139962 CCTGCGTTGATGCCGATTCCAGCTCGTTTAGAAATGTACTTGACAATCGATGCT-GCTGA 140020 ||||||||||||||||| ||||| || | || | || || || | ||| | | Sbjct 264713 CCTGCGTTGATGCCGATACCAGCACGCTGTGACACATAGCGTACGAT-GGCGCTAGTGGT 264655 Query 140021 GTCGTTGATACTGT-TAAGCGAATCATCAGACTCGATAACAACACACGAACTGAATTGAC 140079 | |||||||| || ||||| |||| || | ||||| | || ||||| || || |||| Sbjct 264654 GGCGTTGATAGAGTCTAAGC-TATCACCACATTCGATTAAGACGCACGAGCTAAACTGAC 264596 Query 140080 GAATCGGTGTACGGGCTCCTGCCATAATAGGAGTTGGCAATGAAACGCGCTTTTGAGATA 140139 | || ||||| | |||| ||| || || ||||| | ||| | |||||| || Sbjct 264595 GCGATGGCGTACGCACACCTGACATGATTGGCGTTGGTAGTGA-----GATTTTGA-ATT 264542 Query 140140 CT------GCATCATAGAAACGAATAACAT 140163 || ||||||||||| || | |||| Sbjct 264541 CTGAGGTCGCATCATAGAAGCGTTTGACAT 264512 >seq26767 Length=1149 Score = 138 bits (152), Expect = 1e-27 Identities = 284/419 (68%), Gaps = 4/419 (1%) Strand=Plus/Plus Query 139708 ACATCAGATCGTTGATTTGCACACCGTAATCCAAGTGACGAATGCGGTTCTCTTCAACGC 139767 |||||| | || ||||| || | ||||| | |||||| | | || ||||||| || Sbjct 32 ACATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGC 91 Query 139768 CTTTGTTGTTTTTCAGAACAAGCAAGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACA 139827 | | || ||||| | ||| | || |||||| ||| || ||||| |||||||| | | Sbjct 92 CCCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATA 151 Query 139828 ACGTCGCTGCACCACCACGAACACCACCTTGAGAACAGGATTTAACCGCAGTCTGGAAGT 139887 || || || ||||| | ||| || ||||||||||||||||| || ||| | || || | Sbjct 152 TAGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAAT 211 Query 139888 GTTTCCAGAAAGGAATTACGCCAGTGTGTTTGACTTCACCGAAACCAATTTTTGAGCCTT 139947 |||| | |||||||| ||||| || |||| || | ||| ||| Sbjct 212 GTTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTA 271 Query 139948 CAGCTCGGATTCGACCTGCGTTGATGCCGATTCCAGCTCGTTTAGAAATGTACTTGACAA 140007 | || || ||| || || || || || ||||| ||||||| ||||| || || |||| Sbjct 272 CTGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAA 331 Query 140008 TCGATGCTGCTGAGT--CGTTGATACTGTTAAGCGAATCATCAGACTCGATAACAACACA 140065 | || || | ||| |||| ||| | || ||||||| | || || | |||||| Sbjct 332 TAGA-ACTAGT-AGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACA 389 Query 140066 CGAACTGAATTGACGAATCGGTGTACGGGCTCCTGCCATAATAGGAGTTGGCAATGAAA 140124 || || ||||| ||| | || || | |||| | |||||| || || || || |||| Sbjct 390 TGAGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAA 448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 533335701218880