Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_024122.1 Length=162910 Score E Sequences producing significant alignments: (Bits) Value seq249645 104 2e-17 seq249537 89.7 5e-13 >seq249645 Length=476466 Score = 104 bits (114), Expect = 2e-17 Identities = 273/406 (67%), Gaps = 8/406 (2%) Strand=Plus/Plus Query 9397 CTTCCAACACCTATTATGTCCGGCGTCCGCACCCCGACCCGACAGTTCAGCTCTTGTGTA 9456 || ||||| || || ||||| || || || || || | || ||||| ||||| || || Sbjct 264556 CTACCAACGCCAATCATGTCAGGTGTGCGTACGCCATCGCGTCAGTTTAGCTCGTGCGTC 264615 Query 9457 TTAATCAAAACTGGTGATACATTGGACTCAATTAATGCCACTGCGAAAAGCATCGTGGAT 9516 |||||| || |||||||| || ||||| || || ||||| | | |||||| Sbjct 264616 TTAATCGAATGTGGTGATAGCTTAGACTCTATCAACGCCACCACTAGCGCCATCGTACGC 264675 Query 9517 TATGTTTCCAAACGTGCTGGCATCGGATTCGATGTTGGGGCAATTCGTGGCATCGGTAGC 9576 ||||| || | |||||||| ||||| || | | || || |||| | | |||||| Sbjct 264676 TATGTGTCACAGCGTGCTGGTATCGGCATCAACGCAGGTCGTATCCGTGCCCTTGGTAGC 264735 Query 9577 CCTATCCGTAAAGGGGAAATGGTCCATACAGGTCTG-GTTCC-ATTCATCAAGTATTTGA 9634 ||||||||| || ||| ||||| || ||| |||| || || || | || | Sbjct 264736 CCTATCCGTGGCGGTGAAGCACAGCATACTGG-CTGTATTCCTTTTTATAAATTGTTCCA 264794 Query 9635 CTGGTGCCCTGAAGTCTTGCTCTCAAGGCGGTATCCGTGGTGGATCGGCAACATGCTATG 9694 | ||| | || | ||||| ||||| || | ||||| || | || || | | | Sbjct 264795 AACG-GCCGTTAAATGCTGCTCACAAGGTGGCGTACGTGGCGGTGCTGCGACGTTGT-TC 264852 Query 9695 TTCCCA-TCTGGCATTATCAATTTGA-TGATGTCGTTGTTCTCAAAAACAACCGTGGATT 9752 | |||| | ||||||| || |||| | || | | || |||||||| ||||| || | Sbjct 264853 TACCCACTATGGCATTTAGAAGTTGAGTCAT-TACTGGTACTCAAAAATAACCGCGGTGT 264911 Query 9753 GGAAGAGAACCGTGAACGCCGTATCGACTATGGGATTCAGATTAAC 9798 ||||| ||||||| || | ||| ||||| || | ||| | ||| Sbjct 264912 TGAAGACAACCGTGTCCGTCATATGGACTACGGCGTACAGTTAAAC 264957 >seq249537 Length=1253 Score = 89.7 bits (98), Expect = 5e-13 Identities = 67/78 (86%), Gaps = 2/78 (3%) Strand=Plus/Minus Query 83198 TTTATTTAGTGGTGACCCTGGCTGGACTTGAACCAGCGACCAATCGATTATGAGTCGACT 83257 ||||||| | || ||| |||||| |||||||||||||||| ||||||||||||| || Sbjct 79 TTTATTT--TAATGGCCCCTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCT 22 Query 83258 GCTCTAACCACTGAGCTA 83275 ||||| |||||||||||| Sbjct 21 GCTCTTACCACTGAGCTA 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 519443063025600