Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_024122.1
Length=162910
Score E
Sequences producing significant alignments: (Bits) Value
seq249645 104 2e-17
seq249537 89.7 5e-13
>seq249645
Length=476466
Score = 104 bits (114), Expect = 2e-17
Identities = 273/406 (67%), Gaps = 8/406 (2%)
Strand=Plus/Plus
Query 9397 CTTCCAACACCTATTATGTCCGGCGTCCGCACCCCGACCCGACAGTTCAGCTCTTGTGTA 9456
|| ||||| || || ||||| || || || || || | || ||||| ||||| || ||
Sbjct 264556 CTACCAACGCCAATCATGTCAGGTGTGCGTACGCCATCGCGTCAGTTTAGCTCGTGCGTC 264615
Query 9457 TTAATCAAAACTGGTGATACATTGGACTCAATTAATGCCACTGCGAAAAGCATCGTGGAT 9516
|||||| || |||||||| || ||||| || || ||||| | | ||||||
Sbjct 264616 TTAATCGAATGTGGTGATAGCTTAGACTCTATCAACGCCACCACTAGCGCCATCGTACGC 264675
Query 9517 TATGTTTCCAAACGTGCTGGCATCGGATTCGATGTTGGGGCAATTCGTGGCATCGGTAGC 9576
||||| || | |||||||| ||||| || | | || || |||| | | ||||||
Sbjct 264676 TATGTGTCACAGCGTGCTGGTATCGGCATCAACGCAGGTCGTATCCGTGCCCTTGGTAGC 264735
Query 9577 CCTATCCGTAAAGGGGAAATGGTCCATACAGGTCTG-GTTCC-ATTCATCAAGTATTTGA 9634
||||||||| || ||| ||||| || ||| |||| || || || | || |
Sbjct 264736 CCTATCCGTGGCGGTGAAGCACAGCATACTGG-CTGTATTCCTTTTTATAAATTGTTCCA 264794
Query 9635 CTGGTGCCCTGAAGTCTTGCTCTCAAGGCGGTATCCGTGGTGGATCGGCAACATGCTATG 9694
| ||| | || | ||||| ||||| || | ||||| || | || || | | |
Sbjct 264795 AACG-GCCGTTAAATGCTGCTCACAAGGTGGCGTACGTGGCGGTGCTGCGACGTTGT-TC 264852
Query 9695 TTCCCA-TCTGGCATTATCAATTTGA-TGATGTCGTTGTTCTCAAAAACAACCGTGGATT 9752
| |||| | ||||||| || |||| | || | | || |||||||| ||||| || |
Sbjct 264853 TACCCACTATGGCATTTAGAAGTTGAGTCAT-TACTGGTACTCAAAAATAACCGCGGTGT 264911
Query 9753 GGAAGAGAACCGTGAACGCCGTATCGACTATGGGATTCAGATTAAC 9798
||||| ||||||| || | ||| ||||| || | ||| | |||
Sbjct 264912 TGAAGACAACCGTGTCCGTCATATGGACTACGGCGTACAGTTAAAC 264957
>seq249537
Length=1253
Score = 89.7 bits (98), Expect = 5e-13
Identities = 67/78 (86%), Gaps = 2/78 (3%)
Strand=Plus/Minus
Query 83198 TTTATTTAGTGGTGACCCTGGCTGGACTTGAACCAGCGACCAATCGATTATGAGTCGACT 83257
||||||| | || ||| |||||| |||||||||||||||| ||||||||||||| ||
Sbjct 79 TTTATTT--TAATGGCCCCTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCT 22
Query 83258 GCTCTAACCACTGAGCTA 83275
||||| ||||||||||||
Sbjct 21 GCTCTTACCACTGAGCTA 4
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 519443063025600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |