Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_024124.2 Length=169148 Score E Sequences producing significant alignments: (Bits) Value seq26767 167 3e-36 seq249645 107 2e-18 seq244327 93.3 5e-14 >seq26767 Length=1149 Score = 167 bits (184), Expect = 3e-36 Identities = 280/404 (69%), Gaps = 6/404 (1%) Strand=Plus/Minus Query 27212 CGTTTTTATGATGCCGTTTCTACTCATCAAGTTTCATTGCCTACTCCAATTATGGCAGGT 27271 ||||||||| ||||| |||| ||| || |||| || || || ||||||||| | || Sbjct 479 CGTTTTTATAATGCCATTTCAACTTTCAAAATTTCTTTACCGACACCAATTATGTCTGGA 420 Query 27272 GCTCGTACTCCAACTCGCCAGTTCTCTAGTT---GTGTAGTTATTGAAGCCGGTGATTCG 27328 | | | ||||| ||||| || || ||| | |||| | |||||| | |||| Sbjct 419 GTTAGAACTCCTACTCGACAATT---TAGCTCATGTGTTTTAATTGAATGTGATGATAAT 363 Query 27329 TTAAAATCTATTAACAAAACTTCAGCATCAATTATTGAATATATTTCTAAACGAGCTGGT 27388 || | ||||||||| ||| | || ||| | ||||| ||||| ||||||| || Sbjct 362 CTAGATTCTATTAACGCTACTACTAGTTCTATTGTAAAATATGTTTCTCAACGAGCAGGA 303 Query 27389 ATAGGTATCAACGTTGGTATGCTTCGTGCAGAAGGTTCTAAGATCGGTATGGGTGAAGTT 27448 || ||||| || | ||| | ||||||||| |||| | || | | || |||| Sbjct 302 ATTGGTATTAATGCTGGAAAAATTCGTGCAGTAGGTAGTCCTATTAGAAATGGCGAAGCA 243 Query 27449 CGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGTTCT 27508 ||||| ||| |||||| || | |||||||| |||| ||| |||||||| |||||| Sbjct 242 TTTCATACTGGTTGTATTCCTTTTTATAAACATTTTCAAAGTGCTGTAAAATCCTGTTCT 183 Query 27509 CAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAAGTA 27568 ||||| || || | ||||| || || || | |||||| || ||||| || ||| | Sbjct 182 CAAGGAGGAGTTAGAGGTGGAGCGGCAACTATATTTTATCCAATATGGCATTTTGAAATT 123 Query 27569 GAGAACCTATTAGTTCTGAAAAATAATAAAGGTGTGGATGAAAA 27612 || | |||||||| | |||||||||| || | || ||||| Sbjct 122 GAAAGTTTATTAGTTTTAAAAAATAATAGGGGCATTGAAGAAAA 79 >seq249645 Length=476466 Score = 107 bits (118), Expect = 2e-18 Identities = 298/450 (66%), Gaps = 8/450 (2%) Strand=Plus/Plus Query 27191 GACCGTTTGAAACATATTATTCGTTTTTATGATGCCGTTTCT--ACTCATCAAGTTTCAT 27248 ||||||||| | || | | || || |||||||| || | ||| || | ||| Sbjct 264499 GACCGTTTGCATTATGTCAAACGCTTCTATGATGCGACCTCAGAATTCA--AAATCTCAC 264556 Query 27249 TGCCTACTCCAATTATGGCAGGTGCTCGTACTCCAACTCGCCAGTTCT-CTAGTTGTGTA 27307 | || || ||||| ||| |||||| ||||| ||| | || ||||| || || | || Sbjct 264557 TACCAACGCCAATCATGTCAGGTGTGCGTACGCCATCGCGTCAGTTTAGCTCGT-GCGTC 264615 Query 27308 GTTATTGAAGCCGGTGATTCGTTAAAATCTATTAACAAAACTTC-AGCATCAATTATTGA 27366 | || ||| |||||| ||| | ||||| ||| || | ||| || | | Sbjct 264616 TTAATCGAATGTGGTGATAGCTTAGACTCTATCAACGCCACCACTAGCGCCA-TCGTACG 264674 Query 27367 ATATATTTCTAAACGAGCTGGTATAGGTATCAACGTTGGTATGCTTCGTGCAGAAGGTTC 27426 ||| | || | || |||||||| || ||||||| ||| | ||||| ||| Sbjct 264675 CTATGTGTCACAGCGTGCTGGTATCGGCATCAACGCAGGTCGTATCCGTGCCCTTGGTAG 264734 Query 27427 TAAGATCGGTATGGGTGAAGTTCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCA 27486 ||| || ||||||| | ||||| || |||||| || | ||| ||||| Sbjct 264735 CCCTATCCGTGGCGGTGAAGCACAGCATACTGGCTGTATTCCTTTTTATAAATTGTTCCA 264794 Query 27487 AACTGCAGTAAAATCTTGTTCTCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTA 27546 ||| || || |||| || || |||||||| | ||||| |||||||| || || || Sbjct 264795 AACGGCCGTTAAATGCTGCTCACAAGGTGGCGTACGTGGCGGTGCTGCGACGTTGTTCTA 264854 Query 27547 TCCGATGTGGCACTTAGAAGTAGAGAACCTATTAGTTCTGAAAAATAATAAAGGTGTGGA 27606 || | ||||| |||||||| ||| || | || || |||||||| ||||| || Sbjct 264855 CCCACTATGGCATTTAGAAGTTGAGTCATTACTGGTACTCAAAAATAACCGCGGTGTTGA 264914 Query 27607 TGAAAACCGTATTCGACATATGGACTACGG 27636 || |||||| | || |||||||||||||| Sbjct 264915 AGACAACCGTGTCCGTCATATGGACTACGG 264944 >seq244327 Length=1302 Score = 93.3 bits (102), Expect = 5e-14 Identities = 136/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 29187 AAGTATCAATCATTATTAGATTCTATCCAAGGCAGA-GCCCCATCTGCGGTACTTATGGC 29245 || |||||| |||||||||| ||||| ||||| ||| | || | | | | || | | Sbjct 991 AAATATCAAACATTATTAGACTCTATTCAAGGAAGAAGTCCTAACATTGCTT-TTCTACC 933 Query 29246 ACTGATTTCTGACCCTTCATTAGATACATGGGTTGCAACATGGACATTCAGTGAAACTAT 29305 | | |||||| || |||||| || ||| ||| ||||||| | || |||||||| Sbjct 932 AATTATTTCTATTCCGGAATTAGAAACCTGGATTGAAACATGGTCTTTTTCGGAAACTAT 873 Query 29306 TCACTCTCGTTCATATACTCATATCATGCGAAATCTTTATACAGACCCATCTAAGGTATT 29365 |||||| ||||| ||||||||||| || ||||| || || |||||| |||| Sbjct 872 TCACTCACGTTCTTATACTCATATTATTAGAAATATTGTTAATTCTCCATCTTTAATATT 813 Query 29366 TGATGAGATT 29375 |||||| ||| Sbjct 812 TGATGATATT 803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539337984295040