Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_024125.2 Length=168470 Score E Sequences producing significant alignments: (Bits) Value seq26767 215 6e-51 seq249645 105 7e-18 >seq26767 Length=1149 Score = 215 bits (238), Expect = 6e-51 Identities = 321/452 (71%), Gaps = 10/452 (2%) Strand=Plus/Plus Query 140752 CATCAAATCATTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 140811 |||||| | ||| | ||| || ||||||| | ||||| | | |||||||| | ||| Sbjct 33 CATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCC 92 Query 140812 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 140871 | |||||||| ||||| | | | |||||| ||| |||||||| || |||||| | Sbjct 93 CCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATAT 152 Query 140872 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAACATGATTTAACAGCAGTCTGAAAATG 140931 ||| || || || || | || ||| || || ||||| ||||| |||||| | |||||||| Sbjct 153 AGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATG 212 Query 140932 TTTCCAAAAAGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTC 140991 ||| ||||||||||| ||||||||| | |||| || | | ||| | |||| | Sbjct 213 TTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTAC 272 Query 140992 AGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAAT 141051 |||||||| | ||| | |||||||||||||| || |||| ||| | ||||| ||||| Sbjct 273 TGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAAT 332 Query 141052 TGA---AGCGGAAGCCTTATTGATAGACTTCAATGAATCTCCTGCC--TCAATAACAACA 141106 || || | ||| ||| ||||| | | || | || | | ||||| | |||| Sbjct 333 AGAACTAGTAGTAGCGTTA---ATAGAATCTA--GATTATCATCACATTCAATTAAAACA 387 Query 141107 CATGAACTAAACTGTCGAGTCGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAATGAA 141166 ||||| ||||| |||||||| ||||| | |||| |||||| || || || || ||| Sbjct 388 CATGAGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAA 447 Query 141167 ATCTGTCGAGTAGATACTGCTTCATAAAAACG 141198 || | ||| || | || | ||||||||| Sbjct 448 ATTTTGAAAGTTGAAATGGCATTATAAAAACG 479 >seq249645 Length=476466 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 140768 TGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAAA 140827 || || || || ||||||||||| | ||||| ||||| || || ||||||||| | Sbjct 264950 TGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTTTTGAGT 264891 Query 140828 ACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 140887 || || | |||||||| |||||||| | || || | || ||||| |||||| Sbjct 264890 ACCAGTAATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGCACCGCCA 264831 Query 140888 CGAATTCCACCCTGTGAACATGATTTAACAGCAGTCTGAAAATGTTTCCAAAAAGGAATA 140947 || | ||||| ||||| || ||||||| || || || || ||| ||||||||||| Sbjct 264830 CGTACGCCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAAAGGAATA 264771 Query 140948 ACACCAGTATGGCGTACTTCACC 140970 |||||||| || ||||||| Sbjct 264770 CAGCCAGTATGCTGTGCTTCACC 264748 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 138907 TCAATATTGGGCACGACTTGATTAAAGGAGCCCTCTTTTGATTCTTTAACAGAGACTGGT 138966 ||||| | ||||||||||| || ||| ||| ||||||||| |||| | |||||| | Sbjct 265916 TCAATCTCAGGCACGACTTGCTTTAAGATGCCATCTTTTGATGCTTTGATAGAGACCAGA 265857 Query 138967 CCACGTGGAGGCTCGATACCGTTTGT 138992 |||||||| |||||||||||||| || Sbjct 265856 CCACGTGGTGGCTCGATACCGTTGGT 265831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537175631518400