Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_024137.1 Length=152778 Score E Sequences producing significant alignments: (Bits) Value seq158858 659 0.0 seq82942 114 1e-20 seq149378 93.3 4e-14 >seq158858 Length=235449 Score = 659 bits (730), Expect = 0.0 Identities = 728/965 (75%), Gaps = 6/965 (1%) Strand=Plus/Plus Query 147675 ATGAAAATCGTAAACTTTGGAAGCACATTTAAAATCTACGGAGACGACTTAAAAACATTT 147734 |||||||| | ||||| ||||| || | |||||| ||||| || ||||||||||| | | Sbjct 171607 ATGAAAATTATTAACTTCGGAAGTACTTATAAAATTTACGGTGATGACTTAAAAACTTAT 171666 Query 147735 GACCAATTACCTGCTGCTACATATAAGGTAGATTTCCACCCAATGCAAGGTTTCTCCTTA 147794 ||| || |||| ||||||||||| || ||||| ||| | |||| ||||||||| ||| Sbjct 171667 GACAAACTACCAGCTGCTACATACAAAGTAGAATTCAATCCAAGATCAGGTTTCTCTTTA 171726 Query 147795 GAGAAGATTGACAACTTCGAATCTAAGGAACAAAAGATTTACGGAAGCCACCAAGACAAG 147854 ||||||||||| ||||| ||||| | |||| ||||||||| ||||| |||| ||| || Sbjct 171727 GAGAAGATTGATAACTTTGAATCAACGGAAGCAAAGATTTATGGAAGTCACCCAGAAAAA 171786 Query 147855 ATTGATAAGGTGTTACGATCCTACGGCAAGTTTGAACGCAGTCTAGGTATCATTCTAAGC 147914 ||| |||| || ||| ||| || | || |||||||| || ||||| | || | || Sbjct 171787 ATTAATAAAGTATTAAAATCATATGAAAAATTTGAACGTAGCTTAGGTCTTATCTTGAGT 171846 Query 147915 GGCCACAAAGGTATGGGTAAATCAATGTTCGTTCAATTAATTGCAGAAGCAGTAGTAGCT 147974 || ||||||| ||||||||||| ||||| |||||| | |||||||||||||| || Sbjct 171847 GGTAACAAAGGAATGGGTAAATCTATGTTTGTTCAACTTATTGCAGAAGCAGTTGTTAAA 171906 Query 147975 AAAGGTATTCCTGTAATCATGGTTACGAAAGCATATCCAGGGATCGCAGACTTCATTGAA 148034 || | || || || || |||||||| || |||| |||||||| || || ||||||||| Sbjct 171907 AAGGAAATCCCGGTTATTATGGTTACAAAGGCATTCCCAGGGATTGCTGATTTCATTGAA 171966 Query 148035 GAGATTGACCAAGAAGCGTTAGTAGTGTTCGATGAGTTTGAGAAGATGTTCAACCCACGT 148094 | |||||||||||||| ||| | | || ||||||||||| ||||||||||| || ||| Sbjct 171967 CAAATTGACCAAGAAGCATTAATTATCTTGGATGAGTTTGAAAAGATGTTCAATCCTCGT 172026 Query 148095 AACGATAAAGCAGAAACACAGGACAACCTGTTAGGTCTATTCGATGGTACGTCTCAGAAG 148154 || || ||||||||| |||||| ||| | | || |||| |||||||| ||||||||| Sbjct 172027 AATGAAGAAGCAGAAAAACAGGAAAACTTACTGGGGTTATTTGATGGTACTTCTCAGAAG 172086 Query 148155 AAGCGTATGTACGCTATCACAGTTAACGA-CTTATACAAAGTGAATGAGTTCATGTTAAG 148213 || ||||| || || || || || ||||| |||| | || || |||||||| |||||||| Sbjct 172087 AAACGTATCTATGCGATTACGGTAAACGATCTTA-ATAAGGTAAATGAGTTTATGTTAAG 172145 Query 148214 TCGTCCTGGTCGATTCCACTACCACATTCGTTTCGACTACCCAACGGCTACGGAAATCGA 148273 ||||||||||||||||| ||||| || || || || || ||||| ||||| ||||| || Sbjct 172146 CCGTCCTGGTCGATTCCATTACCATATCCGATTTGATTATCCAACTGCTACTGAAATTGA 172205 Query 148274 AATCTACTTAAAAGATAAGATTGATCCTAAATACTACGGACAAATTAAACAGGTTGTTAG 148333 ||||||| ||||||| || |||| | | || | || |||| || || ||||| Sbjct 172206 AATCTACCTAAAAGACAAAATTGCTGAACAGTATCATGGTGAAATCAAGCATGTTGTAGC 172265 Query 148334 TTTCGCAAACCGTGTGAAACTGAACTACGATTCATTACGTGCCATCGCATTCGAATTAAA 148393 || ||||| ||||| || | || ||||| |||||||| || || || |||||||| Sbjct 172266 ATTTGCAAATCGTGTAAAGTTAAATTACGACAGCTTACGTGCGATTGCGTTTGAATTAAA 172325 Query 148394 TGAAGGGTATCCGTTCCGTGCTGCTATCGGTGACTTAAACATCTTAGCAACTGATTCACA 148453 ||| || ||| | |||||| ||||||| ||||| ||||| |||||| |||| |||||||| Sbjct 172326 TGAGGGTTATACATTCCGTTCTGCTATTGGTGATTTAAATATCTTAACAACAGATTCACA 172385 Query 148454 ACGTTACGATGTAAAAGTTACACTAGGTAACGGTAAAGTATTCGACTTAAAACGTAAAGA 148513 ||| || || || ||||| | || | |||||||||| |||| |||| | |||| Sbjct 172386 ACGATATGACGTTAAAGTGATTCTTGATAACGGTAAATCTATCGAATTAAGAAGTAAGAG 172445 Query 148514 AATCAACTTATTCAGTGAAGAGGTTCGTCTAGACGGATACATGGGGGGAGGAGACTACTT 148573 ||||| | ||||||||| | ||| || || || ||| || || || ||||| Sbjct 172446 TATCAATCTGTTCAGTGAAACGATTCAACTTAGTGGTTATATGCATGGTGGGGATTACTT 172505 Query 148574 CTCATTATCA--TTCAACCCTGAGAACATCGAAGAAGATTTAGACAAAATGACAGTGGAC 148631 ||| ||| | || ||||| | || |||| ||||| | | |||||| || || Sbjct 172506 CTC--TATGAGTTTTAACCCAGCAAATATCGTTGAAGAAACACATAAAATGCTTGTTGAT 172563 Query 148632 GGAGA 148636 ||||| Sbjct 172564 GGAGA 172568 Score = 370 bits (410), Expect = 1e-97 Identities = 493/677 (73%), Gaps = 6/677 (1%) Strand=Plus/Plus Query 115175 AGGAGGAATTGAAAATGGATAAATTCGGGAACCGCATGAAAGGTTATGAAAATGCTTATA 115234 ||||||||| | |||||| | | || | |||||||| | || || ||||| ||| Sbjct 146972 AGGAGGAATAGTTAATGGACAGCATTGGAGATCGCATGAAGAGATACGAGAATGCATATC 147031 Query 115235 GAACAAAGTTACCACAGAGAATGCCAGTAATCGTACGTATTGATGGTAAGGCA-TTCCAC 115293 | | |||||||| | |||||||| || || ||| | |||||||| | || || || Sbjct 147032 GCATTAAGTTACCTGAAAGAATGCCCGTGATTGTAAGGATTGATGG-AGCACACTTTCAT 147090 Query 115294 ACTTATACAAAAGGTATGAACCGA-CCATTCGATTCAACAT-TAGCATACACAATGTGGG 115351 || |||||||||||| || | | || || || || || ||||| | || | |||| Sbjct 147091 ACATATACAAAAGGT-TGCGCTAAGCCTTTTGAC-CAGGATCTAGCAGAAGCATTTTGGG 147148 Query 115352 AAACTTGCCAGTACTTAGCGAAGAACGTTATGGGTTGTAAACTAGCATACACGCAATCTG 115411 |||| ||| | |||||||| | ||| ||||||| ||| ||| ||| || || | Sbjct 147149 AAACATGCAAATACTTAGCTCAAAACATTATGGGCGCGAAATTAGTTTACCATCAGTCGG 147208 Query 115412 ACGAAATTAGTCTATTAATCACAAACTATGAAAAGCTAACAACTCAATCATGGTTCGATA 115471 | || |||||| | | || || |||||||| ||||| ||||||||||| ||||| || | Sbjct 147209 ATGAGATTAGTATTCTTATTACGAACTATGACAAGCTTACAACTCAATCTTGGTTTGAAA 147268 Query 115472 ACAACTTACAGAAGATCGTTTCAGTGGCCGCATCGCTCGCTACAGCGAAGTTTAACGAAG 115531 | ||| | || ||||| | ||| || | || || | || || || |||||||| |||| Sbjct 147269 ATAACCTTCAAAAGATAGCTTCTGTTTCGGCTTCTATGGCAACTGCAAAGTTTAATGAAG 147328 Query 115532 TTATGAGGGAATCATACCCTAAGAAGGAACTAGCTCTATTTGACGCTAGAGCGTGGGTCT 115591 ||||||| || ||| || | || ||| ||| |||||| | | | || ||| | Sbjct 147329 TTATGAGAGAGAAATATCCGGACAAACCACTTGCTACATTTGATGGTCGCGCACAGGTAT 147388 Query 115592 TACCACAAGATGAGGTAAATAACTACTTCTTATGGAGACAACAGGACGCTACAAAGAATA 115651 | |||||||||||||| ||||| ||| | ||||||||||| || ||| ||||||||| Sbjct 147389 TGCCACAAGATGAGGTTGCAAACTATTTCATTTGGAGACAACAAGATGCTTCAAAGAATA 147448 Query 115652 GTATCTCAATGGTAGCACAAGCAAACTTCCCACACAAAGCTCTGCAAGGTCTAAACGGTA 115711 | ||||||||||| || ||||| ||||| ||||| || ||||||| || || |||| Sbjct 147449 GCATCTCAATGGTTGCTCAAGCTAACTTTCCACATAAGCAATTGCAAGGCCTTAATGGTA 147508 Query 115712 AGCAGCTACAAGATAAGTTAATGCTAGAGAAGGACATTAATTGGAACGACTTACCTGTAT 115771 || | | || |||||||||||| ||||| | || || ||||| ||||||||||||| Sbjct 147509 AGGATATGCAGGATAAGTTAATGACTGAGAAAAATATCAACTGGAATGACTTACCTGTAT 147568 Query 115772 GGCAGAAACGAGGAGTGTGCATCGTAAAAGAGTTCTACACAAAAAACGGAGCTTTACGAT 115831 |||| ||||| || | |||||| | |||||||||||| ||| || || |||||| || Sbjct 147569 GGCAAAAACGTGGTATATGCATCATTAAAGAGTTCTACGAAAAGAATGGTGCTTTAAGAA 147628 Query 115832 CCCGTTGGGCAGTAGAT 115848 || ||| |||||||| Sbjct 147629 GTCGATGGTCAGTAGAT 147645 Score = 239 bits (264), Expect = 4e-58 Identities = 481/711 (68%), Gaps = 18/711 (3%) Strand=Plus/Plus Query 93188 TGGATGGAAGAGAGAACAATCTTATTAACACCGTATGGTAGCCGTTTATACGGAACGGAC 93247 ||| | ||||| ||||||||| | || | || ||||| | || ||||| || Sbjct 232469 TGGTTAGAAGATAGAACAATCCTCTTGTCTCCTACAGGTAGTTATGCCTATGGAACAGAT 232528 Query 93248 ACAGAGAACTCGGATTGGGATTTCAAAGGAGTTTGTATCCCACCAAAAGAGTACTTCTTA 93307 ||||| | || ||| ||| | || || || || ||||||||| ||||| | |||| Sbjct 232529 ACAGATACATCAGATAAGGACTATAAGGGTGTATGCATCCCACCAGTTGAGTATTACTTA 232588 Query 93308 GGACTAGAGACATTTAATGAGTATAACAACACTGGTGGTAAAACATTCAAGAACACGAAG 93367 || | || ||||||||||||| |||| | |||||||||| |||| ||||||||| Sbjct 232589 GGTTTGGATTCATTTAATGAGTACAACACATCAGGTGGTAAAAACTTCAGAAACACGAAG 232648 Query 93368 GACGATGTTGACATCAATATCATTCATGTAAGTAAGTTCGTAAAAGATGCTATGCACGGA 93427 || ||||| || | || ||||||||||| | ||||| || | |||||||||||| | Sbjct 232649 GATGATGTCGATGTAAACATCATTCATGTGAACAAGTTTGTTAGAGATGCTATGCAAAGC 232708 Query 93428 GTACCGAATAACATCGAAGTATTATTTGCTAGAGAGCAAGACTATATCATCTTGACTGAA 93487 ||||| ||||||||||| | |||||| | | | | || || |||| | ||| | Sbjct 232709 GTACCTAATAACATCGAGATCCTATTTGTTCGTCCGGAGGATTACATCAAGGTTACTCCA 232768 Query 93488 CTTGGACAAGTCCTACGTGATAACCGACACCTGTTCCTATCAAAACAAATCA--TCACGA 93545 || |||||| || || |||||||| ||| | ||| |||||||| | || | | ||| Sbjct 232769 CTCGGACAAATCTTAATCGATAACCGTCACTTATTCTTATCAAAAAACATTAAGTACCGA 232828 Query 93546 AGTTTGGAGGGTACACACGATCCTTAACAAACAAGCTGAAGAAT------------GGTG 93593 || || || || || || || | ||||| |||||| || Sbjct 232829 --TTCGGTGGATATGCAAATTCACAAATCCAAAAGCTAAAGAATAAGAACTCAAACGGAA 232886 Query 93594 CAGGTCGTCAAGAGTTAGTCGAAGAGTTTGGTTATGATACAAAGAACTTTATGCAAGGTG 93653 |||| | | || ||| ||| | ||| || ||||||||| ||||||||| || Sbjct 232887 CAGGCAGACGTGACTTAATCGGTGCTCATGGCTACGATACAAAGTTCTTTATGCACAGTA 232946 Query 93654 TACGACTACAGTTGTCTGCAATCGAAATCCTAGAAACAGGTGATTACAGTACATACCGTC 93713 | ||| ||| ||||| |||||| | || |||||| |||||||||| || |||| Sbjct 232947 TCCGATTACTAACAAGTGCAACAGAAATCTTGGAGACAGGTAATTACAGTACGTATCGTC 233006 Query 93714 CTGAGCGTG-ACTTCTTACTAGGATGTCGAAACGGGGAATACACTCGTGAGCAAGCACTA 93772 || | || | ||||| || ||| ||||| || || |||||||| || |||| || Sbjct 233007 CTAACCGAGAACTTC-TATTAGATTGTCGTAATGGTAAATACACTTTCGAAGAAGCTTTA 233065 Query 93773 GCATTAGTAGAATCATATGATGAGAGGTTACAAGTAGCGCACGAGAATTCGAAGCTGCCT 93832 | | | || ||| || || | ||| || ||| | ||||| || |||| || Sbjct 233066 GAAATGGTTGAAATGTACGACAATGAATTAGCAGCAGCCTATGAGAAATCAGAGCTTCCG 233125 Query 93833 GAGAAACCTGACTATAACAAAATCAACGGTATGTTAATGGCTATCAATGAA 93883 | ||| |||| ||| |||| ||||| |||||||||| ||||||| || Sbjct 233126 GCAAAAGCTGATTATGACAAGATCAATAAGATGTTAATGGATATCAATAAA 233176 >seq82942 Length=47844 Score = 114 bits (126), Expect = 1e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 11420 GGCTTTTGTACGGCTCATAAGTCGTCCTGCTCCGTGTGGTGCTGAGAAGTTCCAGTCTGC 11479 |||||| | ||| ||| | |||||||| ||||||||||| || |||||||||| | Sbjct 35596 GGCTTTCGAGCGGGACATGATCCGTCCTGCCCCGTGTGGTGCCGAATAGTTCCAGTCCGG 35655 Query 11480 ATTACCTTTACCTTCTGCGATAAGAGAACCATCACGCATGTTGATTGGTACGATAATACG 11539 ||| ||||| |||| |||| || ||||| || |||||||| || || | |||| Sbjct 35656 ATTGCCTTTTCCTTTGACGATCAGTGAACCGTCGCGCATGTTCATCGGAATGATAGCGAC 35715 Query 11540 TTCACCTTTCTGTGCAGATACTGCCCCTTTGCGAAGAACCATGTGCTCCATGTCAATGTA 11599 |||||| || || || | || ||||| || |||| ||| ||||| | || ||||| Sbjct 35716 TTCACCGGCTTGCGCTGAAATCGCACCTTTACGCAGAATCATCTGCTCGAGATCGATGTA 35775 Query 11600 GTTATGGATCGTTGTGAATTG 11620 ||| || ||||| |||||| Sbjct 35776 GTTGTGAATCGTATCGAATTG 35796 >seq149378 Length=35185 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/225 (71%), Gaps = 7/225 (3%) Strand=Plus/Plus Query 36405 GGGATCAACGGGGCTTGGAAAATTCCTGTTATCTCTGCCGAAGATGTTAAGTTCGTTAAC 36464 || || || || |||||||| |||| | || || | |||||| |||||| |||||| Sbjct 23104 GGTATGAATGGCGCTTGGAAGGTTCCAATGATTTCAGGTCAAGATGCTAAGTTTGTTAAC 23163 Query 36465 ATGACGCA-ATCATCAAGAGATATGGAGTTCGAGAAGTGGTTGAACTACTTAATTAACGT 36523 ||||| || | | ||| |||||||| || || |||| ||||||||| ||||| | || Sbjct 23164 ATGACACAGACTAGTAAG-GATATGGAATTTGAAAAGTTTTTGAACTACCTAATTTATGT 23222 Query 36524 ATGTTGCT-CTATCTACGCTATCGACCCATCGGAGATTAACTTCCCGAATAGAGGTGGAG 36582 | ||||| | | ||| || | ||| || |||||||| || ||| | || |||| Sbjct 23223 -TATTGCTGCCGTTTACCAAATTCAGCCAGAAGAAATTAACTTTCCTAATCGTGGGGGAG 23281 Query 36583 CTACAG---GTAGTAGTGGTAACACTCTAAATGAAGGTAGCACAA 36624 |||| | || | | || ||| || | |||||||||| |||| Sbjct 23282 CTACTGGGCGTGGCGGAGGAAACTCTGTTAATGAAGGTAATACAA 23326 Score = 86.0 bits (94), Expect = 6e-12 Identities = 142/203 (70%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 46080 ACTACATGGCATCTGTAACTAACCAAACGGTACAGACTGGTAATACAGTAT--ACTTCAT 46137 |||| |||||| | | | || |||||||| | || ||||| | |||| | |||| Sbjct 32786 ACTATATGGCAACACTTGCAAAGCAAACGGTTGAAACCGGTAA--CCGTATTTATATCAT 32843 Query 46138 GATTAAAAACGTACCGATTGCTCGTGCTCAGTCTATCTCAGCAGAGCGTAGCTTTGGTAC 46197 |||||| |||| | |||| ||||||||| || | | | || || || ||||| Sbjct 32844 GATTAAGAACGAAGTTATTGGTCGTGCTCAATCATTAACTGGTGACCGCTCATTCGGTAC 32903 Query 46198 AACTGGGGTATACCAAATCGGTTCTATCATGCCACAAGAACACGTTTACTTAAAGTACGA 46257 || || || || | ||||| ||||||||||| |||||||| | ||||||||| Sbjct 32904 CCAAGGTGTGTATGAACTTGGTTCAATCATGCCACATGAACACGTATTCTTAAAGTATAC 32963 Query 46258 AGGTTCTGTAACAGTAGAACGTT 46280 ||| | ||| |||| ||||||| Sbjct 32964 GGGTACGGTATCAGTTGAACGTT 32986 Score = 82.4 bits (90), Expect = 7e-11 Identities = 152/221 (69%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 39744 AGTACTTAACAAAGCGGCTGTAATCGTAGGTAAAGGTTACGGTAAAGCTACAGATGCGTT 39803 ||| ||||||||||| ||||| | | ||| |||||| |||| || || ||||| | Sbjct 26211 AGTGCTTAACAAAGCCGCTGTTAAGATTGGTGAAGGTTTCGGTGTTGCAACTGATGCTTA 26270 Query 39804 TATGCCGATTGGGGTGCAAGCTGAATTTACGAATAACCTATTAGACCGTCAACGTGTAAT 39863 |||||| ||||| || | ||||| |||| || | | |||| |||||| | || Sbjct 26271 TATGCCTATTGGTGTTAAGGCTGACTTTATCAACCAACACTTAGGTGCACAACGTATTAT 26330 Query 39864 TCAACC--GTCTAGTGCAGGTGGATTCTCAACTGGTTTCACTATCAACCAATTCTTATCA 39921 | || ||| | | ||||| | ||||||||| || ||| ||||||||| Sbjct 26331 GCTTCCCGGTCAA--ACTGGTGGTATGGAAACTGGTTTAGACATTGACCGTTTCTTATCA 26388 Query 39922 GCTCGTGGTGCTATCAACTTACACGGTTCTACTATCATGGA 39962 || |||||| || || || || ||||| ||||| ||||| Sbjct 26389 GCACGTGGTAACATTAAGTTGCATGGTTCAACTATTATGGA 26429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 487128965189440