Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_024205.1 Length=159837 Score E Sequences producing significant alignments: (Bits) Value seq82942 161 1e-34 seq158858 111 2e-19 seq149378 109 6e-19 >seq82942 Length=47844 Score = 161 bits (178), Expect = 1e-34 Identities = 336/493 (68%), Gaps = 12/493 (2%) Strand=Plus/Plus Query 7011 TTAGCTTTAAAATTGTATAAAGGTTTGATAATATCTTTGA-TA--TCGATTGTATCTTTC 7067 || |||||||| || || | || ||||| | |||||| || |||| ||||| | Sbjct 35411 TTCGCTTTAAAGTTATAGAGCGGCTTGATGA---CTTTGAGTAGCTCGACCGTATCCATT 35467 Query 7068 GTGTTCTCGATAATTTCATCCATAGGTTTGTACACCATAGGGGCTTCATCCAATGTGCTC 7127 |||||| ||| ||||| ||||| |||||||| || | || | ||||| ||| Sbjct 35468 GTGTTCCGGATGATTTCTTCCATCGGTTTGTAGACGAACGGTGACTCATCACGTGTCGAT 35527 Query 7128 TCAACAACAGAAGTTGTCCAAACGCCAGCCATTGTATTTGTAAATTCTTCGATGTCTAGT 7187 || || || ||| | | ||| ||| | ||| || | |||||| | | ||| | | Sbjct 35528 TCGACGACCGAACTCGACCAGACGTCCTGCATCGTCGCTTCAAATTCCTTCAAGTCCACT 35587 Query 7188 GAATCCTTAGCCTTTCT-GCGACTCATAATACGTCCTGCTCCATGAGGTGCTGAGAAGTT 7246 || | || ||||| ||| ||| || |||||||| || || ||||| || |||| Sbjct 35588 GATTTGA-AGGCTTTCGAGCGGGACATGATCCGTCCTGCCCCGTGTGGTGCCGAATAGTT 35646 Query 7247 CCAATCAGGATTACCTTTACCAAACGCAATGATAGAACCATCTCGCATGTTGATAGGGAT 7306 ||| || ||||| ||||| || | || | ||||| || |||||||| || || || Sbjct 35647 CCAGTCCGGATTGCCTTTTCCTTTGACGATCAGTGAACCGTCGCGCATGTTCATCGGAAT 35706 Query 7307 AATCACTCGCTCTCCTTGTTGAGCTGAGATAGCACCTTTACGCATAATCATGTTGTCCAT 7366 || | || || ||| ||||| || ||||||||||||| |||||| | || | Sbjct 35707 GATAGCGACTTCACCGGCTTGCGCTGAAATCGCACCTTTACGCAGAATCATCTGCTCGAG 35766 Query 7367 ATCGATATAGTTATGGATAGTATCGAATGAATCAGTGATTTTCCACCCCAT--CTTAGCA 7424 |||||| ||||| || || ||||||||| || || | ||| ||| ||| | Sbjct 35767 ATCGATGTAGTTGTGAATCGTATCGAATTGATTGGTCGCTGACCAGTTCATTGCTT--CC 35824 Query 7425 ACGATTACATCAATCATCGCTTGGCGGTTTAACGCAGCGTAGTATTGCGCGATTTTCATA 7484 | ||| || || |||||||||| ||||| | || |||||| ||| ||||| || | Sbjct 35825 AGGATGACGTCGGTCATCGCTTGACGGTTCAGTGCCGCGTAGCGTTGGGCGATCTTTAAG 35884 Query 7485 TCATGCATGTAGT 7497 ||||||| ||||| Sbjct 35885 TCATGCAGGTAGT 35897 >seq158858 Length=235449 Score = 111 bits (122), Expect = 2e-19 Identities = 118/150 (79%), Gaps = 8/150 (5%) Strand=Plus/Plus Query 103101 gATTGGGCGCTTTAAACTCCGTGAATTCAGAGGAAGCCTAAGTCGTAAGA----TATGGT 103156 ||||| | | ||||| | |||||||||| ||||||||| || || || |||||| Sbjct 135467 GATTGCGTTCGTTAAATTGGGTGAATTCAGGGGAAGCCTACGTGCTATGAAGCATATGGT 135526 Query 103157 AATTCTGAGCCAAGCTTAACAGGGATGTTAAGAAGGTGCAACGACTAAT-GTATACGGAC 103215 ||| ||||||| |||| | |||||| | ||||||||||||||||||| |||||| || Sbjct 135527 AATCCTGAGCCGAGCTGCATAGGGATATGCAGAAGGTGCAACGACTAATCGTATAC-CAC 135585 Query 103216 TAGAACAGTCTATGAAAC-AACACGAGCGC 103244 ||||||||| ||||| | |||||||||| Sbjct 135586 TAGAACAGT-GATGAAGCGGACACGAGCGC 135614 Score = 105 bits (116), Expect = 7e-18 Identities = 159/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 131173 ATGTTGAGTTTTATTGGAAGAGGTAGCGCATTTAATACAGAAGAAGGAAACAACAGCGCA 131232 ||| | | |||||||||||||||||| |||||||| ||| |||||||||||||| |||| Sbjct 193853 ATGCTTAATTTTATTGGAAGAGGTAGTGCATTTAACACAAAAGAAGGAAACAACTGCGCT 193912 Query 131233 TATTTTGTGCATGAAGGGGAGTTAATCCTTATTGATTGCGGTAGT--AACATTTTTGATA 131290 ||| || | || | | || | | ||||||||||||||| |||| || | Sbjct 193913 TATATTAAAAAGGATGATCATTTGTTTTTAATTGATTGCGGTAGTTCAACA--TTCGGCC 193970 Query 131291 GGCTAAAGGCTTCTAGGATGTTAGATGTATTCAAAAGAGTACGAGTGATTATTACACATA 131350 | ||| | |||| | |||||| | | || |||| || | | || ||| Sbjct 193971 GCTTAATTGAATCTAAATTACTAGATGAAGTGAAGCAAGTAACTGTACTACTCACTCATT 194030 Query 131351 CACATCCAGACCATATCGGTTCATTAGGTGATTTAATTTTCTAT 131394 |||||| |||||| | |||||| |||| ||||||||||||||| Sbjct 194031 TACATCCTGACCATGTAGGTTCACTAGGCGATTTAATTTTCTAT 194074 >seq149378 Length=35185 Score = 109 bits (120), Expect = 6e-19 Identities = 281/417 (67%), Gaps = 12/417 (3%) Strand=Plus/Plus Query 45695 TATATGGCAAGTTTAGCTAACCAAACAGTCCAATCAGCAAATACCGTAT--ATTTCATGA 45752 |||||||||| | || || ||||| || || | | || |||||| || |||||| Sbjct 32788 TATATGGCAACACTTGCAAAGCAAACGGTTGAAACCGGTAA--CCGTATTTATATCATGA 32845 Query 45753 TTAAAAACGTTCCGATTGCTCGTGCTCAATCTATCAGTTCAGAGCGTTCATTCGGTACTC 45812 |||| |||| |||| |||||||||||| | | | || || ||||||||||| | Sbjct 32846 TTAAGAACGAAGTTATTGGTCGTGCTCAATCATTAACTGGTGACCGCTCATTCGGTACCC 32905 Query 45813 AAGGTGTTTACGAGATTGGTTCTATCATGCCAAAAGAGCACGTTTACTT-ACGT-TACGA 45870 ||||||| || || ||||||| ||||||||| | || ||||| | ||| | || |||| Sbjct 32906 AAGGTGTGTATGAACTTGGTTCAATCATGCCACATGAACACGTATTCTTAAAGTATACG- 32964 Query 45871 AGGTACTGTTACGGTAGAACGTTTCCGTATGCGTAAAGAAAACTTAGCAGCT-TTAGGAT 45929 ||||| || | || ||||||| || | |||| | || | | | | | ||| Sbjct 32965 -GGTACGGTATCAGTTGAACGTTATCGGTTACGTACTGGTAATATGTCTGATAAGAAGAT 33023 Query 45930 TCGCGGCTTTAGGTGAAGAAGTACTACAAATGGACATCATGGATATCGTTCTTTACGATA 45989 | | ||| |||||||||| || | | || || ||| | ||||| | || | |||| Sbjct 33024 T-ACTGCTCTAGGTGAAGATGTTTTGAAGATTGATATCTTAGATATTAATGTTAAGGATA 33082 Query 45990 ACATCACATCCGAAGTAGTTATCGCTTACCGTGGATGTTCAATCGATACATACAGTGAAT 46049 || || | || | ||| || |||||||| ||||| | || ||| ||| Sbjct 33083 ACCAAACTGGTGCCTTAATCATCTGCTATCGTGGATGCTCAATTAACACCTACTCAGAAA 33142 Query 46050 CTGTATC-TGTTGGTGAAATCAGTTCTGAGTCTGCTCGATTCTACTTCTTGACATCA 46105 || |||| | | || || | | ||| ||||| | |||||||| |||||| ||| Sbjct 33143 CT-TATCGGGCTAACGATATTACTGGTGAATCTGCACAATTCTACTACTTGACTTCA 33198 Score = 93.3 bits (102), Expect = 4e-14 Identities = 256/385 (66%), Gaps = 18/385 (5%) Strand=Plus/Plus Query 39049 AAATCTATCGAGTGGGCTATTTTTTATGGTGACGCAGCATTATCATCTGAGGCTGATGGA 39108 ||| |||| || |||||||| || ||||||||| | | ||| | ||| | | || Sbjct 26068 AAAACTATTGAATGGGCTATCTTCTATGGTGACTCTGACTTAACTGCTGGTGAAAAGGGC 26127 Query 39109 CAAGCAGGTATCGAGTTCGATGGCTTACATAAACTGATTGACCAAGATACAAACGTAATC 39168 | | || | || || |||||||| || || || ||||| ||| || || Sbjct 26128 GATG---GTCTGGAATTTGATGGCTTGCAAAAGCTTATTGATGCTCATAACCAC---ATT 26181 Query 39169 GACCTTAAAGGTGCTCGTTTAGACG----AAGCTACTTTAAACAAAGCAGCAGTTATTGT 39224 |||||| |||||| ||| ||| ||| | ||| |||||||| || |||| | Sbjct 26182 GACCTTGAAGGTGGAGAATTA-ACGCCACAAG-TGCTT--AACAAAGCCGCTGTTAAGAT 26237 Query 39225 TGGTAAAGGTTATGGTCGCGCTACTGATGCGTTTATGCCGATAGGGGTGCAAGCTGACTT 39284 |||| |||||| ||| || |||||||| | |||||| || || || | |||||||| Sbjct 26238 TGGTGAAGGTTTCGGTGTTGCAACTGATGCTTATATGCCTATTGGTGTTAAGGCTGACTT 26297 Query 39285 CACGAATAATCTATTAGACCGTCAACGTGTAATTCAACC--GTCAACTGCTGGTGGATTC 39342 | || | | |||| |||||| | || | || ||||| ||||||| | Sbjct 26298 TATCAACCAACACTTAGGTGCACAACGTATTATGCTTCCCGGTCAAA--CTGGTGGTATG 26355 Query 39343 TCAACTGGTTTCTCTATTAACCAATTCTTATCTACTCGTGGTGCAATCAACTTACATGGT 39402 ||||||||| ||| ||| |||||||| | |||||| || || || |||||| Sbjct 26356 GAAACTGGTTTAGACATTGACCGTTTCTTATCAGCACGTGGTAACATTAAGTTGCATGGT 26415 Query 39403 TCAACAATCATGGAGAATGATAACA 39427 ||||| || ||||| ||||||| Sbjct 26416 TCAACTATTATGGACTTGGATAACA 26440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 509642310691360