Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_024207.1
Length=159656
Score E
Sequences producing significant alignments: (Bits) Value
seq82942 167 2e-36
seq158858 105 7e-18
seq149378 105 7e-18
>seq82942
Length=47844
Score = 167 bits (184), Expect = 2e-36
Identities = 335/492 (68%), Gaps = 10/492 (2%)
Strand=Plus/Plus
Query 7343 TTAGCTTTAAAATTGTATAAAGGTTTGATGATATCTTTGA-TA--TCGATTGTATCTTTC 7399
|| |||||||| || || | || ||||||| |||||| || |||| ||||| |
Sbjct 35411 TTCGCTTTAAAGTTATAGAGCGGCTTGATGA---CTTTGAGTAGCTCGACCGTATCCATT 35467
Query 7400 GTGTTCTCGATAATTTCATCCATAGGTTTGTACACCATAGGAGCTTCATCTAATGTGCTC 7459
|||||| ||| ||||| ||||| |||||||| || | || | ||||| |||
Sbjct 35468 GTGTTCCGGATGATTTCTTCCATCGGTTTGTAGACGAACGGTGACTCATCACGTGTCGAT 35527
Query 7460 TCAACAACAGAAGTTGTCCAAACGCCAGCCATTGTATTTGTAAATTCTTCGATGTCTAGT 7519
|| || || ||| | | ||| ||| | ||| || | |||||| | | ||| | |
Sbjct 35528 TCGACGACCGAACTCGACCAGACGTCCTGCATCGTCGCTTCAAATTCCTTCAAGTCCACT 35587
Query 7520 GAATCCTTAGCTTTTCTACGGCTCATAATACGTCCTGCTCCATGAGGTGCAGAAAAGTTC 7579
|| | ||||| ||| ||| || |||||||| || || ||||| ||| |||||
Sbjct 35588 GATTTGAAGGCTTTCGAGCGGGACATGATCCGTCCTGCCCCGTGTGGTGCCGAATAGTTC 35647
Query 7580 CAATCAGGATTACCTTTACCAAACGCAATGATAGAACCATCTCGCATGTTGATAGGGATA 7639
|| || ||||| ||||| || | || | ||||| || |||||||| || || ||
Sbjct 35648 CAGTCCGGATTGCCTTTTCCTTTGACGATCAGTGAACCGTCGCGCATGTTCATCGGAATG 35707
Query 7640 ATTACTCGTTCTCCTTGTTGAGCTGAGATAGCACCTTTACGCATAATCATATTGTCCATA 7699
|| | ||| || ||| ||||| || ||||||||||||| |||||| | || | |
Sbjct 35708 ATAGCGACTTCACCGGCTTGCGCTGAAATCGCACCTTTACGCAGAATCATCTGCTCGAGA 35767
Query 7700 TCGATATAGTTATGGATAGTATCGAAAGAATCCATGATTTCCCACCCCAT--CTTAGCAA 7757
||||| ||||| || || |||||||| || | | ||| ||| ||| | |
Sbjct 35768 TCGATGTAGTTGTGAATCGTATCGAATTGATTGGTCGCTGACCAGTTCATTGCTT--CCA 35825
Query 7758 CGATTACATCAATCATCGCTTGGCGGTTTAACGCAGCGTAGTATTGTGCGATTTTCATAT 7817
||| || || |||||||||| ||||| | || |||||| ||| ||||| || | |
Sbjct 35826 GGATGACGTCGGTCATCGCTTGACGGTTCAGTGCCGCGTAGCGTTGGGCGATCTTTAAGT 35885
Query 7818 CATGCATGTAGT 7829
|||||| |||||
Sbjct 35886 CATGCAGGTAGT 35897
>seq158858
Length=235449
Score = 105 bits (116), Expect = 7e-18
Identities = 159/224 (71%), Gaps = 4/224 (2%)
Strand=Plus/Plus
Query 131091 ATGTTGAATTTTATTGGAAGAGGTAGTGCATTTAACACAGAAGAAGGAAACAACAGTGCA 131150
||| | ||||||||||||||||||||||||||||||||| |||||||||||||| | ||
Sbjct 193853 ATGCTTAATTTTATTGGAAGAGGTAGTGCATTTAACACAAAAGAAGGAAACAACTGCGCT 193912
Query 131151 TACTTTGTACATGAAGGGGAGTTAATCCTTATTGATTGCGGCAGT--AACATTTTTGATA 131208
|| || | | || | | || | | ||||||||||| ||| |||| || |
Sbjct 193913 TATATTAAAAAGGATGATCATTTGTTTTTAATTGATTGCGGTAGTTCAACA--TTCGGCC 193970
Query 131209 GGCTAAAAGCTTCTAGGATGTTAGATGTATTCAAAAGAGTACGAGTGATTGTTACACATA 131268
| ||| | |||| | |||||| | | || |||| || | | || |||
Sbjct 193971 GCTTAATTGAATCTAAATTACTAGATGAAGTGAAGCAAGTAACTGTACTACTCACTCATT 194030
Query 131269 CACATCCAGACCATATCGGTTCGTTAGGTGATTTAATTTTCTAT 131312
|||||| |||||| | ||||| |||| |||||||||||||||
Sbjct 194031 TACATCCTGACCATGTAGGTTCACTAGGCGATTTAATTTTCTAT 194074
>seq149378
Length=35185
Score = 105 bits (116), Expect = 7e-18
Identities = 280/417 (67%), Gaps = 12/417 (3%)
Strand=Plus/Plus
Query 45608 TATATGGCAAGTTTAGCTAACCAAACAGTCCAATCAGCAAATACCGTAT--ATTTCATGA 45665
|||||||||| | || || ||||| || || | | || |||||| || ||||||
Sbjct 32788 TATATGGCAACACTTGCAAAGCAAACGGTTGAAACCGGTAA--CCGTATTTATATCATGA 32845
Query 45666 TTAAAAACGTTCCGATTGCTCGTGCTCAGTCTATCAGTTCAGAGCGTTCATTCGGTACTC 45725
|||| |||| |||| ||||||||| || | | | || || ||||||||||| |
Sbjct 32846 TTAAGAACGAAGTTATTGGTCGTGCTCAATCATTAACTGGTGACCGCTCATTCGGTACCC 32905
Query 45726 AAGGTGTTTACGAGATTGGTTCTATCATGCCAAAAGAGCACGTTTACTT-ACGT-TACGA 45783
||||||| || || ||||||| ||||||||| | || ||||| | ||| | || ||||
Sbjct 32906 AAGGTGTGTATGAACTTGGTTCAATCATGCCACATGAACACGTATTCTTAAAGTATACG- 32964
Query 45784 AGGTACTGTTACGGTAGAACGTTTCCGTATGCGTAAAGAAAACTTAGCAGCT-TTAGGAT 45842
||||| || | || ||||||| || | |||| | || | | | | | |||
Sbjct 32965 -GGTACGGTATCAGTTGAACGTTATCGGTTACGTACTGGTAATATGTCTGATAAGAAGAT 33023
Query 45843 TCGCGGCTTTAGGCGAAGAAGTACTACAAATGGATATCATGGATATCGTTCTTTACGATA 45902
| | ||| |||| ||||| || | | || |||||| | ||||| | || | ||||
Sbjct 33024 T-ACTGCTCTAGGTGAAGATGTTTTGAAGATTGATATCTTAGATATTAATGTTAAGGATA 33082
Query 45903 ACATCACATCCGAAGTAGTTATCGCTTACCGTGGATGTTCAATCGATACATACAGTGAAT 45962
|| || | || | ||| || |||||||| ||||| | || ||| |||
Sbjct 33083 ACCAAACTGGTGCCTTAATCATCTGCTATCGTGGATGCTCAATTAACACCTACTCAGAAA 33142
Query 45963 CTGTATC-TGTTGGTGAAATCAGTTCTGAGTCTGCTCGATTCTACTTCTTGACATCA 46018
|| |||| | | || || | | ||| ||||| | |||||||| |||||| |||
Sbjct 33143 CT-TATCGGGCTAACGATATTACTGGTGAATCTGCACAATTCTACTACTTGACTTCA 33198
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 509065045422080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |