Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_024207.1 Length=159656 Score E Sequences producing significant alignments: (Bits) Value seq82942 167 2e-36 seq158858 105 7e-18 seq149378 105 7e-18 >seq82942 Length=47844 Score = 167 bits (184), Expect = 2e-36 Identities = 335/492 (68%), Gaps = 10/492 (2%) Strand=Plus/Plus Query 7343 TTAGCTTTAAAATTGTATAAAGGTTTGATGATATCTTTGA-TA--TCGATTGTATCTTTC 7399 || |||||||| || || | || ||||||| |||||| || |||| ||||| | Sbjct 35411 TTCGCTTTAAAGTTATAGAGCGGCTTGATGA---CTTTGAGTAGCTCGACCGTATCCATT 35467 Query 7400 GTGTTCTCGATAATTTCATCCATAGGTTTGTACACCATAGGAGCTTCATCTAATGTGCTC 7459 |||||| ||| ||||| ||||| |||||||| || | || | ||||| ||| Sbjct 35468 GTGTTCCGGATGATTTCTTCCATCGGTTTGTAGACGAACGGTGACTCATCACGTGTCGAT 35527 Query 7460 TCAACAACAGAAGTTGTCCAAACGCCAGCCATTGTATTTGTAAATTCTTCGATGTCTAGT 7519 || || || ||| | | ||| ||| | ||| || | |||||| | | ||| | | Sbjct 35528 TCGACGACCGAACTCGACCAGACGTCCTGCATCGTCGCTTCAAATTCCTTCAAGTCCACT 35587 Query 7520 GAATCCTTAGCTTTTCTACGGCTCATAATACGTCCTGCTCCATGAGGTGCAGAAAAGTTC 7579 || | ||||| ||| ||| || |||||||| || || ||||| ||| ||||| Sbjct 35588 GATTTGAAGGCTTTCGAGCGGGACATGATCCGTCCTGCCCCGTGTGGTGCCGAATAGTTC 35647 Query 7580 CAATCAGGATTACCTTTACCAAACGCAATGATAGAACCATCTCGCATGTTGATAGGGATA 7639 || || ||||| ||||| || | || | ||||| || |||||||| || || || Sbjct 35648 CAGTCCGGATTGCCTTTTCCTTTGACGATCAGTGAACCGTCGCGCATGTTCATCGGAATG 35707 Query 7640 ATTACTCGTTCTCCTTGTTGAGCTGAGATAGCACCTTTACGCATAATCATATTGTCCATA 7699 || | ||| || ||| ||||| || ||||||||||||| |||||| | || | | Sbjct 35708 ATAGCGACTTCACCGGCTTGCGCTGAAATCGCACCTTTACGCAGAATCATCTGCTCGAGA 35767 Query 7700 TCGATATAGTTATGGATAGTATCGAAAGAATCCATGATTTCCCACCCCAT--CTTAGCAA 7757 ||||| ||||| || || |||||||| || | | ||| ||| ||| | | Sbjct 35768 TCGATGTAGTTGTGAATCGTATCGAATTGATTGGTCGCTGACCAGTTCATTGCTT--CCA 35825 Query 7758 CGATTACATCAATCATCGCTTGGCGGTTTAACGCAGCGTAGTATTGTGCGATTTTCATAT 7817 ||| || || |||||||||| ||||| | || |||||| ||| ||||| || | | Sbjct 35826 GGATGACGTCGGTCATCGCTTGACGGTTCAGTGCCGCGTAGCGTTGGGCGATCTTTAAGT 35885 Query 7818 CATGCATGTAGT 7829 |||||| ||||| Sbjct 35886 CATGCAGGTAGT 35897 >seq158858 Length=235449 Score = 105 bits (116), Expect = 7e-18 Identities = 159/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 131091 ATGTTGAATTTTATTGGAAGAGGTAGTGCATTTAACACAGAAGAAGGAAACAACAGTGCA 131150 ||| | ||||||||||||||||||||||||||||||||| |||||||||||||| | || Sbjct 193853 ATGCTTAATTTTATTGGAAGAGGTAGTGCATTTAACACAAAAGAAGGAAACAACTGCGCT 193912 Query 131151 TACTTTGTACATGAAGGGGAGTTAATCCTTATTGATTGCGGCAGT--AACATTTTTGATA 131208 || || | | || | | || | | ||||||||||| ||| |||| || | Sbjct 193913 TATATTAAAAAGGATGATCATTTGTTTTTAATTGATTGCGGTAGTTCAACA--TTCGGCC 193970 Query 131209 GGCTAAAAGCTTCTAGGATGTTAGATGTATTCAAAAGAGTACGAGTGATTGTTACACATA 131268 | ||| | |||| | |||||| | | || |||| || | | || ||| Sbjct 193971 GCTTAATTGAATCTAAATTACTAGATGAAGTGAAGCAAGTAACTGTACTACTCACTCATT 194030 Query 131269 CACATCCAGACCATATCGGTTCGTTAGGTGATTTAATTTTCTAT 131312 |||||| |||||| | ||||| |||| ||||||||||||||| Sbjct 194031 TACATCCTGACCATGTAGGTTCACTAGGCGATTTAATTTTCTAT 194074 >seq149378 Length=35185 Score = 105 bits (116), Expect = 7e-18 Identities = 280/417 (67%), Gaps = 12/417 (3%) Strand=Plus/Plus Query 45608 TATATGGCAAGTTTAGCTAACCAAACAGTCCAATCAGCAAATACCGTAT--ATTTCATGA 45665 |||||||||| | || || ||||| || || | | || |||||| || |||||| Sbjct 32788 TATATGGCAACACTTGCAAAGCAAACGGTTGAAACCGGTAA--CCGTATTTATATCATGA 32845 Query 45666 TTAAAAACGTTCCGATTGCTCGTGCTCAGTCTATCAGTTCAGAGCGTTCATTCGGTACTC 45725 |||| |||| |||| ||||||||| || | | | || || ||||||||||| | Sbjct 32846 TTAAGAACGAAGTTATTGGTCGTGCTCAATCATTAACTGGTGACCGCTCATTCGGTACCC 32905 Query 45726 AAGGTGTTTACGAGATTGGTTCTATCATGCCAAAAGAGCACGTTTACTT-ACGT-TACGA 45783 ||||||| || || ||||||| ||||||||| | || ||||| | ||| | || |||| Sbjct 32906 AAGGTGTGTATGAACTTGGTTCAATCATGCCACATGAACACGTATTCTTAAAGTATACG- 32964 Query 45784 AGGTACTGTTACGGTAGAACGTTTCCGTATGCGTAAAGAAAACTTAGCAGCT-TTAGGAT 45842 ||||| || | || ||||||| || | |||| | || | | | | | ||| Sbjct 32965 -GGTACGGTATCAGTTGAACGTTATCGGTTACGTACTGGTAATATGTCTGATAAGAAGAT 33023 Query 45843 TCGCGGCTTTAGGCGAAGAAGTACTACAAATGGATATCATGGATATCGTTCTTTACGATA 45902 | | ||| |||| ||||| || | | || |||||| | ||||| | || | |||| Sbjct 33024 T-ACTGCTCTAGGTGAAGATGTTTTGAAGATTGATATCTTAGATATTAATGTTAAGGATA 33082 Query 45903 ACATCACATCCGAAGTAGTTATCGCTTACCGTGGATGTTCAATCGATACATACAGTGAAT 45962 || || | || | ||| || |||||||| ||||| | || ||| ||| Sbjct 33083 ACCAAACTGGTGCCTTAATCATCTGCTATCGTGGATGCTCAATTAACACCTACTCAGAAA 33142 Query 45963 CTGTATC-TGTTGGTGAAATCAGTTCTGAGTCTGCTCGATTCTACTTCTTGACATCA 46018 || |||| | | || || | | ||| ||||| | |||||||| |||||| ||| Sbjct 33143 CT-TATCGGGCTAACGATATTACTGGTGAATCTGCACAATTCTACTACTTGACTTCA 33198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 509065045422080