Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_024211.1 Length=158750 Score E Sequences producing significant alignments: (Bits) Value seq158858 122 9e-23 seq149378 87.8 2e-12 >seq158858 Length=235449 Score = 122 bits (134), Expect = 9e-23 Identities = 464/711 (65%), Gaps = 33/711 (5%) Strand=Plus/Minus Query 24353 AGATTTCTTAGTACCATCATCCGTTTTAGGATTCTTTTG-AATTAACTTCTCTTCTCCAT 24411 |||||||||||| |||||||| ||||| |||| ||| ||| ||| | |||||||||| Sbjct 214914 AGATTTCTTAGTTCCATCATCTGTTTTTGGATCCTTGAACAATAAACGT-TCTTCTCCAT 214856 Query 24412 TTACTTGAGCCCACGTAGCCTTCATCGCAAATCCTAGAGAGTCACGAGTGTTATAAGCAT 24471 ||||| ||| | ||||| ||||| ||||| |||||||| || ||||| | ||| Sbjct 214855 TTACTACAGCATATGTAGCTTTCATAGCAAACCCTAGAGAATCGCGAGTCTGATATTGGA 214796 Query 24472 AAGTGTAAGAACCTACTCCTAATACTACGTT--TTCAATTGAGAATCCTGCATC----AA 24525 |||| ||||| || || || || || ||||| || || | || ||| || || Sbjct 214795 AAGTATAAGATCCCACGCCGAAAACAACGTTTGTTGAA--GCAAAGCCTTTTTCTTCTAA 214738 Query 24526 CTAGTCGTTGGTAAATTTCTTGCATGCGTTCGTACGTGATTGAATCTCCGTAGATTGCTC 24585 || || || || ||||| || || || || || || || |||||||| | Sbjct 214737 CTTCTCAACAATAGCTT--TTGCA--CGCTCAAGAGTAATAGAGTCACCATAGATTGCAC 214682 Query 24586 CGATATAAGGTGGTAATACTTTATAACCTTTGCTATTAACTGTGTATCCGAAGATTTCAG 24645 | |||| || ||||| ||||||||| || | ||| ||| || ||||| || Sbjct 214681 CAATATGAGTATCTAATAGTTTATAACCCTTCTCAGTAATTGTTCCACCAAAGATATCCC 214622 Query 24646 CTAATGATGCTACTAGTCCCATACGAGCCCACTTGT-TATCTGCATTAGGGTCTCCACAT 24704 ||| | | | |||||| |||| | | || | | | ||| | |||| ||| | Sbjct 214621 ATAAAGCCTCAATTAGTCCTTTACG-TTCAAGTTCTGTTTTTGCTTCTGGGTTACCA-GT 214564 Query 24705 AAG-ATATCTTCCGGCACACCAGAGTCTGGTCGAATTACTAGTTTACCATCACGAGATGT 24763 ||| ||| | || | ||| || || ||||| || | ||||||||| | Sbjct 214563 AAGAATAAGAACAGGGTCTCCACTATCAGGACGAATAACCATACGACCATCACG---TTC 214507 Query 24764 AATGATATC---TTTAAGGTTAGGTAGTACACGTGATACGTTATCCCAGAAGTCAAACGA 24820 ||||| || ||||| ||| || | | ||| ||||||| ||| ||| Sbjct 214506 CATGATTTCCTTCTTAAGACGAGGAAGAATTTCTCCTACTACTGCCCAGAAATCATACGT 214447 Query 24821 ATCTGATACAACACTCACGATACCTGTAGGGTACACTTCAGTTAATAATCGACG---GAA 24877 ||||| || ||||| | || ||| |||| || || |||||| |||| |||| | | Sbjct 214446 GTCTGAAACTACACTGAAGAAGCCTTTAGGATATACCTCAGTT-ATAA--GACGCTTGTA 214390 Query 24878 TGTTTC---TTCTTCATCTAAATTAACATCAGCCGATGCGCACATCACGCTATGCTCTGT 24934 |||| ||| ||| || |||| | ||| |||| || ||| || || Sbjct 214389 CATTTCGAATTCATCACGGCTATCTGCATCTGTGTTTGCTGACATAACTGAATGTTCAGT 214330 Query 24935 AGCACTAACAGACCCTGCAACTAATTCAGTTTCTACGTTAGCATTATAATACTCTTCTAG 24994 ||| | || | | |||||||| |||| | ||| ||||| ||||| | || || Sbjct 214329 AGCTGGTATTGATGTTCCTACTAATTCCTTTTCAATGTTCGCATTGTAATAATGCTCAAG 214270 Query 24995 ATATACGATAGCTGGGATACTATCAGTTCCTACGAATGATAGTAGGTGACC 25045 ||| | |||||||| | |||| |||||||||||||||| || ||| || Sbjct 214269 ATAAGCAATAGCTGGAACCGTATCTGTTCCTACGAATGATAATAAGTGTCC 214219 >seq149378 Length=35185 Score = 87.8 bits (96), Expect = 2e-12 Identities = 192/282 (68%), Gaps = 8/282 (3%) Strand=Plus/Plus Query 45480 ATGGCAAGTTTAGCTAACCAAACTGTCCAATCCGCAAATACCGTCT--ACTTCATGATTA 45537 ||||||| | || || ||||| || || ||| || |||| | | ||||||||| Sbjct 32791 ATGGCAACACTTGCAAAGCAAACGGTTGAAACCGGTAA--CCGTATTTATATCATGATTA 32848 Query 45538 AGAACGTACCAATCGCTCGTGCACAGTCAATCAGTTCAGAGCGTTCATTCGGTACAACTG 45597 |||||| | || | |||||| || ||| | | | || || ||||||||||| | Sbjct 32849 AGAACGAAGTTATTGGTCGTGCTCAATCATTAACTGGTGACCGCTCATTCGGTACCCAAG 32908 Query 45598 GTGTTTACGAGATTGGTTCTATCATGCCTAAAGAGCACGTTTACTTACGATATGAAGGTA 45657 |||| || || ||||||| |||||||| | || ||||| | |||| ||| |||| Sbjct 32909 GTGTGTATGAACTTGGTTCAATCATGCCACATGAACACGTATTCTTAAAGTATACGGGTA 32968 Query 45658 CTGTAACAGTTGACCGTTTCCGTATGCGTAAGGAGAACTTAGCTGCATTAG--GTTTCGC 45715 | ||| ||||||| |||| || | |||| | || | ||| || || | || | Sbjct 32969 CGGTATCAGTTGAACGTTATCGGTTACGTACTGGTAATATGTCTG-ATAAGAAGATT-AC 33026 Query 45716 CGCTCTTGGTGAAGAAGTATTACAAATGGATATCATGGACAT 45757 ||||| |||||||| || || | || |||||| | || || Sbjct 33027 TGCTCTAGGTGAAGATGTTTTGAAGATTGATATCTTAGATAT 33068 Score = 82.4 bits (90), Expect = 8e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 35550 CTGGTGTAAATGGTGCTTGGAAGATTCCAGTTGTATCCGCTGAAGATGTAAACTTCATCA 35609 ||||| | ||||| ||||||||| ||||| | | || | | |||||| || || | | Sbjct 23102 CTGGTATGAATGGCGCTTGGAAGGTTCCAATGATTTCAGGTCAAGATGCTAAGTTTGTTA 23161 Query 35610 ATATGACTCAGTCATCTAAAGATATGGAATTCGAAAGATGGTTAAACTACCTTATCAACG 35669 | ||||| ||| | ||| ||||||||||| |||| | || |||||||| || | | Sbjct 23162 ACATGACACAGACTAGTAAGGATATGGAATTTGAAAAGTTTTTGAACTACCTAATTTATG 23221 Query 35670 TTATGTGTAGTATTTTCGCAATCGACCCATCTGAGATTAACTTCCCTAACCGAGGCGGCG 35729 |||| | ||| | ||| | ||| || |||||||| ||||| || || || | Sbjct 23222 TTATTGCTGCCGTTTACCAAATTCAGCCAGAAGAAATTAACTTTCCTAATCGTGGGGGAG 23281 Query 35730 CTACAGGG 35737 |||| ||| Sbjct 23282 CTACTGGG 23289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506175529764800