Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_024213.1 Length=158100 Score E Sequences producing significant alignments: (Bits) Value seq149378 87.8 2e-12 >seq149378 Length=35185 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 34434 CTGGTGTAAATGGAGCTTGGAAGATTCCAGTTGTATCTGCTGAAGATGTAAACTTCATCA 34493 ||||| | ||||| ||||||||| ||||| | | || | | |||||| || || | | Sbjct 23102 CTGGTATGAATGGCGCTTGGAAGGTTCCAATGATTTCAGGTCAAGATGCTAAGTTTGTTA 23161 Query 34494 ATATGACTCAGTCGTCTAAAGATATGGAATTCGAAAGATGGTTAAACTACCTTATCAACG 34553 | ||||| ||| | ||| ||||||||||| |||| | || |||||||| || | | Sbjct 23162 ACATGACACAGACTAGTAAGGATATGGAATTTGAAAAGTTTTTGAACTACCTAATTTATG 23221 Query 34554 TTATGTGTAGTATTTTCGCAATCGACCCATCTGAGATTAACTTCCCTAACCGAGGCGGAG 34613 |||| | ||| | ||| | ||| || |||||||| ||||| || || |||| Sbjct 23222 TTATTGCTGCCGTTTACCAAATTCAGCCAGAAGAAATTAACTTTCCTAATCGTGGGGGAG 23281 Query 34614 CTACAGGG 34621 |||| ||| Sbjct 23282 CTACTGGG 23289 Score = 84.2 bits (92), Expect = 2e-11 Identities = 191/282 (68%), Gaps = 8/282 (3%) Strand=Plus/Plus Query 44450 ATGGCAAGTTTAGCTAACCAAACTGTCCAATCCGCAAATACCGTCT--ACTTCATGATTA 44507 ||||||| | || || ||||| || || ||| || |||| | | ||||||||| Sbjct 32791 ATGGCAACACTTGCAAAGCAAACGGTTGAAACCGGTAA--CCGTATTTATATCATGATTA 32848 Query 44508 AAAACGTACCAATCGCTCGTGCACAGTCAATCAGTTCAGAGCGTTCATTCGGTACAACTG 44567 | |||| | || | |||||| || ||| | | | || || ||||||||||| | Sbjct 32849 AGAACGAAGTTATTGGTCGTGCTCAATCATTAACTGGTGACCGCTCATTCGGTACCCAAG 32908 Query 44568 GTGTTTACGAGATTGGTTCTATCATGCCTAAAGAGCACGTTTACTTACGATATGAAGGTA 44627 |||| || || ||||||| |||||||| | || ||||| | |||| ||| |||| Sbjct 32909 GTGTGTATGAACTTGGTTCAATCATGCCACATGAACACGTATTCTTAAAGTATACGGGTA 32968 Query 44628 CTGTAACAGTTGACCGTTTCCGTATGCGTAAGGAGAACTTAGCTGCATTAG--GTTTCGC 44685 | ||| ||||||| |||| || | |||| | || | ||| || || | || | Sbjct 32969 CGGTATCAGTTGAACGTTATCGGTTACGTACTGGTAATATGTCTG-ATAAGAAGATT-AC 33026 Query 44686 CGCTCTTGGTGAAGAAGTATTACAAATGGATATCATGGACAT 44727 ||||| |||||||| || || | || |||||| | || || Sbjct 33027 TGCTCTAGGTGAAGATGTTTTGAAGATTGATATCTTAGATAT 33068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504102477692800