Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_024216.1 Length=160541 Score E Sequences producing significant alignments: (Bits) Value seq82942 170 2e-37 seq158858 111 2e-19 seq149378 105 7e-18 seq242999 82.4 8e-11 >seq82942 Length=47844 Score = 170 bits (188), Expect = 2e-37 Identities = 336/492 (68%), Gaps = 10/492 (2%) Strand=Plus/Plus Query 7401 TTAGCTTTAAAATTGTATAAAGGTTTGATGATATCTTTGA-TA--TCGATTGTATCTTTC 7457 || |||||||| || || | || ||||||| |||||| || |||| ||||| | Sbjct 35411 TTCGCTTTAAAGTTATAGAGCGGCTTGATGA---CTTTGAGTAGCTCGACCGTATCCATT 35467 Query 7458 GTGTTCTCGATAATTTCATCCATAGGTTTGTACACCATAGGAGCTTCATCTAATGTGCTC 7517 |||||| ||| ||||| ||||| |||||||| || | || | ||||| ||| Sbjct 35468 GTGTTCCGGATGATTTCTTCCATCGGTTTGTAGACGAACGGTGACTCATCACGTGTCGAT 35527 Query 7518 TCAACAACAGAAGTTGTCCAAACGCCAGCCATTGTATTTGTAAATTCTTCGATGTCTAGT 7577 || || || ||| | | ||| ||| | ||| || | |||||| | | ||| | | Sbjct 35528 TCGACGACCGAACTCGACCAGACGTCCTGCATCGTCGCTTCAAATTCCTTCAAGTCCACT 35587 Query 7578 GAATCCTTAGCTTTTCTACGGCTCATAATACGTCCTGCTCCATGAGGTGCAGAAAAGTTC 7637 || | ||||| ||| ||| || |||||||| || || ||||| ||| ||||| Sbjct 35588 GATTTGAAGGCTTTCGAGCGGGACATGATCCGTCCTGCCCCGTGTGGTGCCGAATAGTTC 35647 Query 7638 CAATCAGGATTACCTTTACCAAACGCAATGATAGAACCATCTCGCATGTTGATAGGGATA 7697 || || ||||| ||||| || | || | ||||| || |||||||| || || || Sbjct 35648 CAGTCCGGATTGCCTTTTCCTTTGACGATCAGTGAACCGTCGCGCATGTTCATCGGAATG 35707 Query 7698 ATTACTCGTTCTCCTTGTTGAGCTGAGATAGCACCTTTACGCATAATCATATTGTCCATA 7757 || | ||| || ||| ||||| || ||||||||||||| |||||| | || | | Sbjct 35708 ATAGCGACTTCACCGGCTTGCGCTGAAATCGCACCTTTACGCAGAATCATCTGCTCGAGA 35767 Query 7758 TCGATATAGTTGTGGATAGTATCGAAAGAATCCATGATTTCCCACCCCAT--CTTAGCAA 7815 ||||| |||||||| || |||||||| || | | ||| ||| ||| | | Sbjct 35768 TCGATGTAGTTGTGAATCGTATCGAATTGATTGGTCGCTGACCAGTTCATTGCTT--CCA 35825 Query 7816 CGATTACATCAATCATCGCTTGGCGGTTTAACGCAGCGTAGTATTGTGCGATTTTCATAT 7875 ||| || || |||||||||| ||||| | || |||||| ||| ||||| || | | Sbjct 35826 GGATGACGTCGGTCATCGCTTGACGGTTCAGTGCCGCGTAGCGTTGGGCGATCTTTAAGT 35885 Query 7876 CATGCATGTAGT 7887 |||||| ||||| Sbjct 35886 CATGCAGGTAGT 35897 >seq158858 Length=235449 Score = 111 bits (122), Expect = 2e-19 Identities = 118/150 (79%), Gaps = 8/150 (5%) Strand=Plus/Plus Query 103622 GATTGGGCGCTTTAAACTCCGTGAATTCAGAGGAAGCCTAAGTCGTAAGA----TATGGT 103677 ||||| | | ||||| | |||||||||| ||||||||| || || || |||||| Sbjct 135467 GATTGCGTTCGTTAAATTGGGTGAATTCAGGGGAAGCCTACGTGCTATGAAGCATATGGT 135526 Query 103678 AATTCTGAGCCAAGCTTAACAGGGATGTTAAGAAGGTGCAACGACTAAT-GTATACGGAC 103736 ||| ||||||| |||| | |||||| | ||||||||||||||||||| |||||| || Sbjct 135527 AATCCTGAGCCGAGCTGCATAGGGATATGCAGAAGGTGCAACGACTAATCGTATAC-CAC 135585 Query 103737 TAGAACAGTCTATGAAAC-AACACGAGCGC 103765 ||||||||| ||||| | |||||||||| Sbjct 135586 TAGAACAGT-GATGAAGCGGACACGAGCGC 135614 >seq149378 Length=35185 Score = 105 bits (116), Expect = 7e-18 Identities = 280/417 (67%), Gaps = 12/417 (3%) Strand=Plus/Plus Query 45875 TATATGGCAAGTTTAGCTAACCAAACAGTCCAATCAGCAAATACCGTAT--ATTTCATGA 45932 |||||||||| | || || ||||| || || | | || |||||| || |||||| Sbjct 32788 TATATGGCAACACTTGCAAAGCAAACGGTTGAAACCGGTAA--CCGTATTTATATCATGA 32845 Query 45933 TTAAAAACGTTCCGATTGCTCGCGCTCAATCTATCAGTTCAGAGCGTTCATTCGGTACTC 45992 |||| |||| |||| ||| |||||||| | | | || || ||||||||||| | Sbjct 32846 TTAAGAACGAAGTTATTGGTCGTGCTCAATCATTAACTGGTGACCGCTCATTCGGTACCC 32905 Query 45993 AAGGTGTTTACGAGATTGGTTCTATCATGCCAAAAGAGCACGTTTACTT-ACGT-TACGA 46050 ||||||| || || ||||||| ||||||||| | || ||||| | ||| | || |||| Sbjct 32906 AAGGTGTGTATGAACTTGGTTCAATCATGCCACATGAACACGTATTCTTAAAGTATACG- 32964 Query 46051 AGGTACTGTTACGGTAGAACGTTTCCGTATGCGTAAAGAAAACTTAGCAGCT-TTAGGAT 46109 ||||| || | || ||||||| || | |||| | || | | | | | ||| Sbjct 32965 -GGTACGGTATCAGTTGAACGTTATCGGTTACGTACTGGTAATATGTCTGATAAGAAGAT 33023 Query 46110 TCGCGGCTTTAGGCGAAGAAGTATTACAAATGGACATCATGGATATCGTTCTTTACGATA 46169 | | ||| |||| ||||| || || | || || ||| | ||||| | || | |||| Sbjct 33024 T-ACTGCTCTAGGTGAAGATGTTTTGAAGATTGATATCTTAGATATTAATGTTAAGGATA 33082 Query 46170 ACATCACATCCGAAGTAGTTATCGCTTACCGTGGATGTTCAATCGATACATACAGTGAAT 46229 || || | || | ||| || |||||||| ||||| | || ||| ||| Sbjct 33083 ACCAAACTGGTGCCTTAATCATCTGCTATCGTGGATGCTCAATTAACACCTACTCAGAAA 33142 Query 46230 CTGTATC-TGTTGGTGAAATCAGTTCTGAGTCTGCTCGATTCTACTTCTTGACATCA 46285 || |||| | | || || | | ||| ||||| | |||||||| |||||| ||| Sbjct 33143 CT-TATCGGGCTAACGATATTACTGGTGAATCTGCACAATTCTACTACTTGACTTCA 33198 Score = 93.3 bits (102), Expect = 4e-14 Identities = 256/385 (66%), Gaps = 18/385 (5%) Strand=Plus/Plus Query 39228 AAATCTATCGAGTGGGCTATTTTTTATGGTGACGCAGCATTATCATCTGAGGCTGATGGA 39287 ||| |||| || |||||||| || ||||||||| | | ||| | ||| | | || Sbjct 26068 AAAACTATTGAATGGGCTATCTTCTATGGTGACTCTGACTTAACTGCTGGTGAAAAGGGC 26127 Query 39288 CAAGCAGGTATCGAGTTCGATGGCTTACATAAACTGATTGACCAAGATACAAACGTAATC 39347 | | || | || || |||||||| || || || ||||| ||| || || Sbjct 26128 GATG---GTCTGGAATTTGATGGCTTGCAAAAGCTTATTGATGCTCATAACCAC---ATT 26181 Query 39348 GACCTTAAAGGTGCTCGTTTAGACG----AAGCTACTTTAAACAAAGCAGCAGTTATTGT 39403 |||||| |||||| ||| ||| ||| | ||| |||||||| || |||| | Sbjct 26182 GACCTTGAAGGTGGAGAATTA-ACGCCACAAG-TGCTT--AACAAAGCCGCTGTTAAGAT 26237 Query 39404 TGGTAAAGGTTATGGTCGCGCTACTGATGCGTTTATGCCGATAGGGGTGCAAGCTGACTT 39463 |||| |||||| ||| || |||||||| | |||||| || || || | |||||||| Sbjct 26238 TGGTGAAGGTTTCGGTGTTGCAACTGATGCTTATATGCCTATTGGTGTTAAGGCTGACTT 26297 Query 39464 CACGAATAATCTATTAGACCGTCAACGTGTAATTCAACC--GTCAACTGCTGGTGGATTC 39521 | || | | |||| |||||| | || | || ||||| ||||||| | Sbjct 26298 TATCAACCAACACTTAGGTGCACAACGTATTATGCTTCCCGGTCAAA--CTGGTGGTATG 26355 Query 39522 TCAACTGGTTTCTCTATTAACCAATTCTTATCTACTCGTGGTGCAATCAACTTACATGGT 39581 ||||||||| ||| ||| |||||||| | |||||| || || || |||||| Sbjct 26356 GAAACTGGTTTAGACATTGACCGTTTCTTATCAGCACGTGGTAACATTAAGTTGCATGGT 26415 Query 39582 TCAACAATCATGGAGAATGATAACA 39606 ||||| || ||||| ||||||| Sbjct 26416 TCAACTATTATGGACTTGGATAACA 26440 >seq242999 Length=349438 Score = 82.4 bits (90), Expect = 8e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 141785 AAGAACAACTTGAAGAGTATAAGAGCCATAAATGGTTCGCTTGTCAAATGGATGATGGAT 141844 ||||| |||| ||||| |||| | |||||||| |||||||| ||||||||||| Sbjct 42342 AAGAAAAACTAGAAGAACGGAAGAAACGGAAATGGTTTGCTTGTCAGATGGATGATGGTA 42401 Query 141845 TTGTCGCATCTGCTGACACGTTAAAAGAACTGTTAGAGAAGTTCGGTAGGACTAGTGCTA 141904 || ||||| || | |||||| ||||||| ||||| || || ||||| | ||| | Sbjct 42402 TTATCGCAAGTGGGAATACGTTACAAGAACTATTAGAAAAATTAGGTAGACGAAATGCAA 42461 Query 141905 CACATATGTTTAAAGGTGTATACGAGTTTAAGGACTATGCAGAACAATATGGATGGACTG 141964 |||| |||| || ||||||||||| || ||| |||| ||||| Sbjct 42462 AGTATATTAGCGCAGGTCACTATGAGTTTAAGGATTACAACTCACATTATGCTTGGACAA 42521 Query 141965 TTTCGATTTATAAAGGAGCAGAC 141987 | |||||||||||| |||| Sbjct 42522 CTGATATTTATAAAGGATTAGAC 42544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511887585550880