Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_024354.1 Length=149162 Score E Sequences producing significant alignments: (Bits) Value seq249645 176 4e-39 >seq249645 Length=476466 Score = 176 bits (194), Expect = 4e-39 Identities = 267/380 (70%), Gaps = 0/380 (0%) Strand=Plus/Minus Query 118886 CATGATGTCATCAAAGACGATCGACGGATCTGCCAGGATGTTACGGATGATATGGGTGTA 118945 ||| || |||||||||| || ||||| | ||| ||||| |||||||| || || Sbjct 268610 CATAATATCATCAAAGATAATATTTGGATCATTGACGATATTACGAATGATATGCGTATA 268551 Query 118946 TGAGCGAGAGTGGATAGTCTCACTGAACGCCCAAGTCTCTACCCATGTTTCCAGGGTTGT 119005 ||| ||||| || |||||| ||||| ||| ||||| | ||| || || || | Sbjct 268550 GCTGCGTGAGTGAATGGTCTCAGAGAACGACCATGTCTCAATCCACGTCTCAAGCTCAGG 268491 Query 119006 GTCGGACACGATCGGGAGCAGAACTGCGTTCGGCCCACGGCCCTGTACAGAATCCAGAAG 119065 | ||||| | ||| | || || |||| || | ||| || || | ||| || || || Sbjct 268490 GATAGACACTAGCGGCAATAGTACCACGTTTGGACTACGACCTTGGATAGAGTCGAGTAG 268431 Query 119066 GATCTGGTACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGCAGATTCATGTA 119125 | |||| ||||| |||||||| | || ||||||| |||||| | || || | | Sbjct 268430 GGTCTGATACTTAAGGTTGCTCAAAAATATGTGCTGCTCGTGGGATGATAGGTTGCTAAA 268371 Query 119126 GTCGATACGGTCACGGGTCACGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTTGCTT 119185 || |||||||| || | ||| | ||||||||| |||||||| ||||||| || ||||| Sbjct 268370 ATCCATACGGTCGCGTGACACATCAACTTCTTCTGGACGCCAAAAGAACGACAACTGCTT 268311 Query 119186 CTCGATCAGCTTCTCGAACTTGGCGTGTTTCTGCTGGTCATAGCGAGAAACGTTCGGTGT 119245 || |||| | ||| || | | |||||| || ||||||||||| | ||||| | Sbjct 268310 TTCAATCAATTGCTCAAAGATTGGGTGTTTTTGTTGGTCATAGCGCGCTACGTTGACGGG 268251 Query 119246 CTCGCCGAGGAACATCGGCT 119265 || || | ||||||||||| Sbjct 268250 CTGACCAAAGAACATCGGCT 268231 Score = 111 bits (122), Expect = 1e-19 Identities = 247/368 (67%), Gaps = 6/368 (2%) Strand=Plus/Minus Query 118379 CAGGCCAACCGCTCGCATACGCTGGTCGGTGATGTAGTCGATGTAACCGTCCAGCATACC 118438 || ||| |||||| |||||| || |||||||| ||||| || | ||| || | Sbjct 269150 CAAGCCGACCGCTTCCATACGTAAGTTAGTGATGTATTCGATATATTGGCACAGAATGTC 269091 Query 118439 TTTGTTCAGGCCGATCATCGAACCGTCTTTGAACAGGAAGCTGCCCCAGTCTTTCTCCTG 118498 |||||| || || |||||||| || ||||||||||| ||| |||| ||||| || || Sbjct 269090 TTTGTTTAGACCAATCATCGAGCCATCTTTGAACAGATAGCCTGCCCATTCTTTTTCTTG 269031 Query 118499 CACCGATGCGTCGATAAAGCCCTGTCGTGCCTCTTCGTAGCAATCTTCTGCCACACGTGC 118558 | | | || | | ||| | || || ||| | | || ||||| || | Sbjct 269030 CTCAGCAGCTTTGCGGAAGA--TTTCAATACT-TTCATCGAAACACTCTGCGGCAATCTC 268974 Query 118559 AAACAGGTCACCTTCGTTAC---CGTTCTGCATTTCTTTCAGCATATACTGAGTTCCGGA 118615 | || ||| |||| || |||| |||| || ||||||| ||| || || | Sbjct 268973 GACCATCTCAGGATCGTCACGACCGTTGCGCATGAGGTTTAGCATATGCTGCGTACCTGT 268914 Query 118616 CAAATGCAAGGCTTCATCACGAGCAATCAGTTCAATAATGTTGGTGTTACCCAGCATTAC 118675 |||||||| |||||||||||||| || || | ||| || |||| ||||| ||| | Sbjct 268913 CAAATGCAGCGCTTCATCACGAGCGATGAGCTTAATGATTTTGGCATTACCTTCCATCAA 268854 Query 118676 GCCGCGCTCACCGAAAGCGAAGGAGCAGGCGAAGCTCACGTAGAAACGGATCGCTTCCAG 118735 ||||||| | || || || ||||| || || || |||||||| || ||||| || Sbjct 268853 TTTGCGCTCAGCAAACGCAAACGAGCAAGCAAACGAGACATAGAAACGAATGGCTTCTAG 268794 Query 118736 TGCATTGA 118743 | |||| Sbjct 268793 GACGTTGA 268786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475596417047360