Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_024355.1 Length=93794 Score E Sequences producing significant alignments: (Bits) Value seq158858 129 4e-25 >seq158858 Length=235449 Score = 129 bits (142), Expect = 4e-25 Identities = 1102/1754 (63%), Gaps = 59/1754 (3%) Strand=Plus/Minus Query 74697 AATACCTTGATGAACGTGTTTTTGAATAGTAGCAATTAAATCCACTACTTTAAACATATC 74756 ||||||||| | ||||| ||| || |||||||||||| | || || | || Sbjct 229666 AATACCTTGGTCTACGTGAGGTTGGATTTCAGCAATTAAATCAATAACCTTCATTTGGTC 229607 Query 74757 CATATCGTATGCTTCTTTGTAATAGAACCATGTAGAATTATTTAAACCAGGCATAGGATA 74816 ||| || || || |||||| |||| |||| || ||| |||||| ||||| Sbjct 229606 CATCTCATAAGCAGACTTGTAAGAGAAGAATGTTTGTTTTGATAAGTAAGGCATTGGATA 229547 Query 74817 GAATGTTCTACTATCTCCATAAGTT---CTTTCTTCTACTCTATCAGTGATTGGCATTAC 74873 | | || | | || || |||| | ||||||| ||||| |||||||||||| Sbjct 229546 GTAAGT---AGTCGCTTTATCAGTTGAACGAGTTTCTACTTTATCAACGATTGGCATTAC 229490 Query 74874 TGATGCTGTGGCTGATTGAACATA-CGAGATGCTGCCGGTAGGTGCAATTGCTGATAAAT 74932 || ||| || || ||||| | || ||| | || |||||||| | | Sbjct 229489 GCTTGGTGTAGCGTTCTGTACATATCCTGA-GCTTTGATTCGGAGCAATTGCAAGTCTGT 229431 Query 74933 ATGAATGATACATACCATCTTCTTTTACTTTTTGAGATAATGCTTTCCAATCATCTTTTG 74992 | || || |||| |||||| || |||| | || || |||||| | ||| Sbjct 229430 AAGAGTGGTACAAACCATCACGTTGAACTTGCTTCATTAGACGTTCCCAATCCGCAGTTG 229371 Query 74993 TAGGAATATGAATACCTTCAAATAATGCTTTCACTTTGTCAGATTTAATCTCAAAATCT- 75051 | ||||| |||||||||||||||| | || ||||| ||||||| | || ||| Sbjct 229370 TTGGAATTTGAATACCTTCAAATAGTTTCTTAACTTTTTCAGATTGAGGTAAGAATTCTG 229311 Query 75052 TCATTATA-ACG-CTCAAAATATTTACCAGTTTGATAGTCTGAACCTTCAAAGCCTTTAA 75109 | ||| | || ||||||||| |||| || ||| || || || || |||| || Sbjct 229310 TTGTTAAATACTTCTCAAAATAAGTACCTTTTGCATACTCAGATTTCTCGAATCCTTCAA 229251 Query 75110 AAGTTTTATTTCTTTCTTTAGCAATGTCAGTTGA---TTCCATAATAGTCCAATAGTTTA 75166 ||| | ||||||||||||||| || || || ||| ||| ||| |||||| | Sbjct 229250 AAGATACTCCTCTTTCTTTAGCAATCTCTGTAGACTTTTCGATAG-AGTG--ATAGTTCA 229194 Query 75167 CAGTTCTAAAGAATGCGTCTACAAACTCAATAGCGTCTTTTGATTCATAAGCAATACCGT 75226 || ||||||| | |||| || | || |||| |||||| || | ||| || Sbjct 229193 GCATTGCAAAGAATACACGAGCAAAGTCTTTTGCATCTTCTGATTCGTATGGAATGAAGT 229134 Query 75227 TTTGTGCTAAATATCCATGTAGACCTAAAGCCCCCAACCCAACAGAGTGCATTTCATCAT 75286 | | || | ||||||| || | | || | || || ||||| | | | ||| Sbjct 229133 TCTTAGCAAGGAATCCATGAAGGTTCATTGTTCCAAGACCTACTGAGTGTAATGTAGCAT 229074 Query 75287 TGGCTTTTTTAACTGCTGGTGCATTTTTAATGTTTGTTTCATCAGACACTCTTGTTAATG 75346 | ||||| ||||| | || || |||| || | | ||| | || |||||| Sbjct 229073 TCGCTTTCTTAACACCAGGAGCGTTTTCGATACAAGACTTATCTGTAACATCTGTTAACA 229014 Query 75347 CTTTGATTG-AGTATCTTACTG-TTGTTTCAAAGTCTTTTTGTTTCATGACATTTCCAAT 75404 || || ||||| | || | || ||| | | ||||| | | ||| |||||| |||| Sbjct 229013 TTTCCATACCAGTATGT-ACAGCTTCTTTTACA-TCTTTGTTCTCCATTACATTTACAAT 228956 Query 75405 ATTTAATGAACCTAAATTACATGAAATATCTTGACCGATATTATCTG-GTTCTTCATAGT 75463 |||| ||||||||| ||| |||||||| | ||| || | | | || || | Sbjct 228955 GTTTAGTGAACCTAATACACAAGAAATATCATTCTTGATCCAGTCCGCGATATTG-TAAT 228897 Query 75464 CTGTA--TACTCTGATACTTCGCTGTATTGTAAAATTTCACTACAAAGATTAGAGAATTT 75521 | || ||| || | || | || || ||||| ||| ||||||||||||| | ||| Sbjct 228896 CGTTAATTACGCTTGTC--TCCATATACTGAAAAATCTCAGTACAAAGATTAGACATTTT 228839 Query 75522 TACTTTACCTAAATTATTTAATGCGTGGTCTTTGTTAACATTATCTTCAAACATAATATA 75581 || ||||||| ||||||| || | || || | || || | ||||| ||| Sbjct 228838 AACGCCGCCTAAATCTTTTAATGGATGTTGTTCATTCGCGTTTGTTTTATTCATAAAATA 228779 Query 75582 AGGATAGCCACTTTCTATTTGAGTTACAGAAATTTGCTCTAATAAATCTCTAG------G 75635 |||||||||| ||||| |||| | | || | |||| | || | || | Sbjct 228778 AGGATAGCCAGATTCTAATTGAATCGTTGCGATCTTAACTAACATCTCACGAGCTGTAAG 228719 Query 75636 GTCAATTTTTTGCTTTCTAATTTCTGGGTCGTTAATTAGTTTATCGTACCATTCTTCCAT 75695 ||| | || | || | || |||| || || | || || || || | Sbjct 228718 GTCTAACTTACGTTTACGAACCATAGGGTTTGCAACTAACTCGTCATATTTCTCATCTAA 228659 Query 75696 ATCAATTTCATCAATAGTAACGCCATA---TTTATCCCATAAATTTTTAGGATAGAATAA 75752 ||| || || || | ||| ||||| ||||| | | | | ||| |||| Sbjct 228658 ATCCATATCGTCTAGGTGAACTCCATAAGCTTTAT---AAACAGTAGCAGGTGCAAATAG 228602 Query 75753 GTACATAGGTTCATTGTTTCTT---GCTAACTCAATAAACTTGTCT-GGAATAACTACTC 75808 ||||| || |||||| | ||||||| | ||||| ||| || |||||| || Sbjct 228601 ATACATC---TCTTTGTTTTGTTCAGCTAACTGGAAGAACTT-TCTCGGTGTAACTAATC 228546 Query 75809 CAATAGATAATGTTTTAACACGTACATCTTCGTCAGCACTAAtttttttAGTGTCTAAGA 75868 |||||||||| | || || |||| | || || ||| | | |||||| | || | || Sbjct 228545 CAATAGATAAAGATTGAATACGTGTCTTCTCATCGGCATTTACTTTTTTTGAATCAAGGA 228486 Query 75869 AATCG--TAAATATCAGCATGGAACACATTTAAATAAGTAGCAAAGCTACCTTGACGTTT 75926 | || ||| | || |||||| | ||||| || | ||| | ||| | |||| Sbjct 228485 ATTCAATTAAGTCCCA--ATGGAAGATGTTTAAGTATGCAGCTCCGGCACCCGGTCGTTG 228428 Query 75927 ACCGCCTTGATTAATATGTCTTTGTGATTGGTCTAAGTTTTTCATAATAGGTACTACACC 75986 || ||||||||| | ||| | || | ||||| | |||| |||||| Sbjct 228427 TCCAAGTTGATTAATGTAAGAGAATGAATCCTCCATTAACTTCATTACCGGTAATACACC 228368 Query 75987 CATTGTTTTATTATCGTTACCCATTAAATCTTCGTTCTTAGCACGTGTTTTAGTTAAATT 76046 | | || || |||| | | | |||| | | ||||| |||| |||| || Sbjct 228367 ACTAGCAGCGTTCTCAATACCTTTAATAGCTTCAGTACGACCACGTAATTTACTTAAGTT 228308 Query 76047 AATGGAGATTCCACCTCCAAGTTTACTTAACTGTCTGGCTGTACTATTCA-TCATA-TTA 76104 ||| | ||||| || |||| |||| ||||||| | ||| ||| | | | || ||| Sbjct 228307 AATCGCAATTCCTCCACCAATTTTAGATAACTGTTTTGCT--ACTGATAAGTTGTAGTTA 228250 Query 76105 ATATCATTTAGTGAATC-TCCAGTTTCTAATAAGAAACAAGAAACCATTTCTCCTGCTTT 76163 ||| ||||| ||| || |||| ||||||||| ||| ||| ||| | ||| || || Sbjct 228249 ATACTATTTAATGAGTCATCCA-TTTCTAATAGGAAGCAACTAACTAATTCCCCAGCACG 228191 Query 76164 AAATAACCCAGCATTTAACATTGTCGGTGTTGCAGGTTGGTATTGTTGTGTCATTAATAA 76223 | | |||| |||||| ||| ||||| ||||||||||| | ||| |||| | | Sbjct 228190 AGCTTTACCAGAATTTAAATATGTTGGTGTAGCAGGTTGGTAATTTTGCTTCATGATTTG 228131 Query 76224 ATCAATATATTTCAACGCTTCGTCTATATCGCCGTTACCAAAGAACAACGCTACTACTGA 76283 | | ||| | |||| | | ||| || | ||| | || ||||| | || Sbjct 228130 GTTCACATAACGTAGTGCTTTCTTTGTATTACCTGATGCTAAGTATAAAGCTACGATTGC 228071 Query 76284 TAATCTATCTTCATAGCGCTCTAAGAAATGTTGGTTATCATGTGTTTTTAGTGCGTAAGA 76343 | ||| ||||| |||||| | || ||||| | || || || ||| Sbjct 228070 AGCACGATCCTCATAATCTTCTAAGTAGATTTTCTTATCGTCTGAACGTAATGAGTAGTC 228011 Query 76344 ATCATAGAATTTTTTAGCCGACATGTAAGACGGGAATCTAAACTTATAGTTATAAGCACG 76403 | |||||| ||| |||| | ||| || || ||||| |||||||| |||||||| Sbjct 228010 CTTATAGAACTTTGTAGCAGCCATATAGGATTGGAATTCAAACTTATGAGTATAAGCAGC 227951 Query 76404 TT--TAAATACTTT 76415 || ||||||| || Sbjct 227950 TTCATAAATACGTT 227937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299038895515540