Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_024360.1
Length=138036
Score E
Sequences producing significant alignments: (Bits) Value
seq78791 104 2e-17
seq206067 89.7 5e-13
>seq78791
Length=51567
Score = 104 bits (114), Expect = 2e-17
Identities = 358/548 (65%), Gaps = 18/548 (3%)
Strand=Plus/Plus
Query 102853 GAGGCTTACTGGGCGTTAAGTAACTTGTATATGACAGTGGCAACTCCTAC-ATTAGCAAA 102911
|||| ||| || | ||||||| | || ||| |||| ||||| || || || ||
Sbjct 45770 GAGGGATACGAGGAGCTAAGTAAGCTTAATGGTACAATGGCTACTCCAACTATGAGTAA- 45828
Query 102912 TGCAGGTAAAGTAGGCGGGCAACTATCTAGTTGTTTTATAGATACGGTAGACGACAGTTT 102971
||| |||| ||| || | || || ||||| || || ||| ||||||| | |
Sbjct 45829 TGCCTCGAAAGCTTTCGGTCAGTTGTCAAGCTGTTTCATTGACACGTTAGACGATTCTCT 45888
Query 102972 GCAAGGTATTTACGATAGTAATACAGATGTTGCTAGAGTTTCTAAGCAAGGCGGAGGCGT 103031
| ||||| ||| | || ||||| ||| || || |||| ||||| || |
Sbjct 45889 TGAGGGTATCTACTTGAACAACTTTGATGTAGCTCGACTTAGTAAGTCTGGCGGTGGACT 45948
Query 103032 AGGAGTCTATATAGGCAATGTAAGGTCATCAGGGGCACCCATTAGAGGAGTTCTTGGTGC 103091
||||| ||| || ||| | | | || || || ||| | ||| | ||| ||
Sbjct 45949 TGGAGTATATGCTGGAAATATTCGTGCTCTTGGTGCTCCTATTCGTGGATTCGCTGGAGC 46008
Query 103092 TAGTGGAGGAACGGTACCTTGGATTAAACAGTTGAATAACACGGCTGTTAGTGTAGACCA 103151
|| || ||| |||||||||||| ||| | || ||||| ||||| ||||||||
Sbjct 46009 AAGCGGTGGAGTTGTACCTTGGATTCGACAACTAAACAACACAGCTGTCTCAGTAGACCA 46068
Query 103152 ACTAGG--AGCAAGAAAAGGCGCTATAACTGTAACGTTAGACGTTTTCCACAAAGATATA 103209
| |||| ||| || || ||| || | || | ||| | ||||||||||| |
Sbjct 46069 ATTAGGTAAGC--GATCTGGAGCTGTAGCGGTTTATCTTGACATCTTCCACAAAGACGTG 46126
Query 103210 GAAGCCTTTCTGGATTTAAGACTAAACAACGGAGACCAACGTTTACGAGCTCACGACATT 103269
||||||| || || || |||| | |||||||||| || ||||||||| || |||
Sbjct 46127 CAAGCCTTCCTAGACCTACGACTTAGCAACGGAGACGAAAAAGAACGAGCTCATGAGATT 46186
Query 103270 ----TTTACTTCTGTTTCTATTCCTGATTTATTTATG-GAA-GCTGTAGAGAATAGAGGG 103323
|| ||| || |||||| |||||||||||| ||| |||| |||||| | ||
Sbjct 46187 CACCTTGGCTTATG----TATTCCAGATTTATTTATGAGAACGCTG-AGAGAAGA-CGGA 46240
Query 103324 GAATGGTATTTATTTGACCCTTACGAGGTTAAGCAGAAAAAAGGCTGGTACCTACAAGAC 103383
|| ||| || ||||| || || || || | || | || ||| | ||||||||
Sbjct 46241 GAGTGGCATCTATTTTGTCCGTATGAAGTAGAAAAGTTTATGGGATGGAAACTACAAGAT 46300
Query 103384 TACTATGA 103391
| ||| ||
Sbjct 46301 TGCTACGA 46308
>seq206067
Length=18993
Score = 89.7 bits (98), Expect = 5e-13
Identities = 195/291 (67%), Gaps = 6/291 (2%)
Strand=Plus/Plus
Query 103774 ATTCAAGTTAGGATGCTAGACAATGTAATTGAGTTAAACAAACTACCTGTACCACAAGCT 103833
|||||| | ||||||| || || || || || | |||| | ||| || |||||
Sbjct 12510 ATTCAAATGCGGATGCTCGATAACGTCATCGATCTCAACACGATTGATGTGCCGCAAGCA 12569
Query 103834 CTAATTACTAACCAGAAGTATAGGGCAGTGGGATTAGGAACTTTTGGGTGGCACCACCTA 103893
| || || |||||||| || ||||||| ||| | || || || || ||||| |||||
Sbjct 12570 CAGATCACGAACCAGAAATACCGGGCAGTTGGACTCGGGACATTCGGCTGGCATCACCTG 12629
Query 103894 CTAGCTAAAAAAGGTATTCATTGGGACAGTGAAGAGGCTACTAATTTTGCAGATAGCCTG 103953
|| || |||| || | |||||| | |||||| | | | || ||| | ||
Sbjct 12630 CTCGCACTCGAAGGCATCCGTTGGGAATCGGTCGAGGCTGTTCAGTACGCCGATCGTCTC 12689
Query 103954 TATGAAAGAATTGCTTTCCACACTATCGAAGCAAGTATGAAACTAGCCGAGGAAAAAGGA 104013
|| |||| ||| || | | || || || ||| ||| |||| || | ||||||||
Sbjct 12690 TACGAAAAAATCGCATACTTGACGATTGATGCATCAATGCAACTGGCGAAAGAAAAAGGG 12749
Query 104014 GCTTACCCATACTTTAAAGACAGTTCG---TGGGATACAGGGGAGTACTTC 104061
||||||| |||| ||| | ||| ||| | |||||||||||| ||
Sbjct 12750 GCTTACCGTCTCTTTGAAG---GATCGGAGTGGCAAACAGGGGAGTACATC 12797
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 440112144196480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |