Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_024360.1 Length=138036 Score E Sequences producing significant alignments: (Bits) Value seq78791 104 2e-17 seq206067 89.7 5e-13 >seq78791 Length=51567 Score = 104 bits (114), Expect = 2e-17 Identities = 358/548 (65%), Gaps = 18/548 (3%) Strand=Plus/Plus Query 102853 GAGGCTTACTGGGCGTTAAGTAACTTGTATATGACAGTGGCAACTCCTAC-ATTAGCAAA 102911 |||| ||| || | ||||||| | || ||| |||| ||||| || || || || Sbjct 45770 GAGGGATACGAGGAGCTAAGTAAGCTTAATGGTACAATGGCTACTCCAACTATGAGTAA- 45828 Query 102912 TGCAGGTAAAGTAGGCGGGCAACTATCTAGTTGTTTTATAGATACGGTAGACGACAGTTT 102971 ||| |||| ||| || | || || ||||| || || ||| ||||||| | | Sbjct 45829 TGCCTCGAAAGCTTTCGGTCAGTTGTCAAGCTGTTTCATTGACACGTTAGACGATTCTCT 45888 Query 102972 GCAAGGTATTTACGATAGTAATACAGATGTTGCTAGAGTTTCTAAGCAAGGCGGAGGCGT 103031 | ||||| ||| | || ||||| ||| || || |||| ||||| || | Sbjct 45889 TGAGGGTATCTACTTGAACAACTTTGATGTAGCTCGACTTAGTAAGTCTGGCGGTGGACT 45948 Query 103032 AGGAGTCTATATAGGCAATGTAAGGTCATCAGGGGCACCCATTAGAGGAGTTCTTGGTGC 103091 ||||| ||| || ||| | | | || || || ||| | ||| | ||| || Sbjct 45949 TGGAGTATATGCTGGAAATATTCGTGCTCTTGGTGCTCCTATTCGTGGATTCGCTGGAGC 46008 Query 103092 TAGTGGAGGAACGGTACCTTGGATTAAACAGTTGAATAACACGGCTGTTAGTGTAGACCA 103151 || || ||| |||||||||||| ||| | || ||||| ||||| |||||||| Sbjct 46009 AAGCGGTGGAGTTGTACCTTGGATTCGACAACTAAACAACACAGCTGTCTCAGTAGACCA 46068 Query 103152 ACTAGG--AGCAAGAAAAGGCGCTATAACTGTAACGTTAGACGTTTTCCACAAAGATATA 103209 | |||| ||| || || ||| || | || | ||| | ||||||||||| | Sbjct 46069 ATTAGGTAAGC--GATCTGGAGCTGTAGCGGTTTATCTTGACATCTTCCACAAAGACGTG 46126 Query 103210 GAAGCCTTTCTGGATTTAAGACTAAACAACGGAGACCAACGTTTACGAGCTCACGACATT 103269 ||||||| || || || |||| | |||||||||| || ||||||||| || ||| Sbjct 46127 CAAGCCTTCCTAGACCTACGACTTAGCAACGGAGACGAAAAAGAACGAGCTCATGAGATT 46186 Query 103270 ----TTTACTTCTGTTTCTATTCCTGATTTATTTATG-GAA-GCTGTAGAGAATAGAGGG 103323 || ||| || |||||| |||||||||||| ||| |||| |||||| | || Sbjct 46187 CACCTTGGCTTATG----TATTCCAGATTTATTTATGAGAACGCTG-AGAGAAGA-CGGA 46240 Query 103324 GAATGGTATTTATTTGACCCTTACGAGGTTAAGCAGAAAAAAGGCTGGTACCTACAAGAC 103383 || ||| || ||||| || || || || | || | || ||| | |||||||| Sbjct 46241 GAGTGGCATCTATTTTGTCCGTATGAAGTAGAAAAGTTTATGGGATGGAAACTACAAGAT 46300 Query 103384 TACTATGA 103391 | ||| || Sbjct 46301 TGCTACGA 46308 >seq206067 Length=18993 Score = 89.7 bits (98), Expect = 5e-13 Identities = 195/291 (67%), Gaps = 6/291 (2%) Strand=Plus/Plus Query 103774 ATTCAAGTTAGGATGCTAGACAATGTAATTGAGTTAAACAAACTACCTGTACCACAAGCT 103833 |||||| | ||||||| || || || || || | |||| | ||| || ||||| Sbjct 12510 ATTCAAATGCGGATGCTCGATAACGTCATCGATCTCAACACGATTGATGTGCCGCAAGCA 12569 Query 103834 CTAATTACTAACCAGAAGTATAGGGCAGTGGGATTAGGAACTTTTGGGTGGCACCACCTA 103893 | || || |||||||| || ||||||| ||| | || || || || ||||| ||||| Sbjct 12570 CAGATCACGAACCAGAAATACCGGGCAGTTGGACTCGGGACATTCGGCTGGCATCACCTG 12629 Query 103894 CTAGCTAAAAAAGGTATTCATTGGGACAGTGAAGAGGCTACTAATTTTGCAGATAGCCTG 103953 || || |||| || | |||||| | |||||| | | | || ||| | || Sbjct 12630 CTCGCACTCGAAGGCATCCGTTGGGAATCGGTCGAGGCTGTTCAGTACGCCGATCGTCTC 12689 Query 103954 TATGAAAGAATTGCTTTCCACACTATCGAAGCAAGTATGAAACTAGCCGAGGAAAAAGGA 104013 || |||| ||| || | | || || || ||| ||| |||| || | |||||||| Sbjct 12690 TACGAAAAAATCGCATACTTGACGATTGATGCATCAATGCAACTGGCGAAAGAAAAAGGG 12749 Query 104014 GCTTACCCATACTTTAAAGACAGTTCG---TGGGATACAGGGGAGTACTTC 104061 ||||||| |||| ||| | ||| ||| | |||||||||||| || Sbjct 12750 GCTTACCGTCTCTTTGAAG---GATCGGAGTGGCAAACAGGGGAGTACATC 12797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440112144196480