Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_024364.1 Length=131952 Score E Sequences producing significant alignments: (Bits) Value seq151743 89.7 4e-13 seq78791 84.2 2e-11 >seq151743 Length=442 Score = 89.7 bits (98), Expect = 4e-13 Identities = 79/95 (83%), Gaps = 4/95 (4%) Strand=Plus/Minus Query 93959 TTTTCTTATCTAGTTCTCACTAACCCCATTTGGTTAGCTACCTAGAAATTTAGTCGTTAG 94018 ||||||||||| |||||||||| |||||| ||||||| ||||||||||||||||| Sbjct 402 TTTTCTTATCTGGTTCTCACTAGTACCATTTTACCAGCTACCCAGAAATTTAGTCGTTAG 343 Query 94019 GCATTTACAAGCT--TGCG-CTTGATTTAGCACGG 94050 |||||||| |||| | || ||||||||||||| Sbjct 342 GCATTTAC-AGCTCATACGAGCTGATTTAGCACGG 309 >seq78791 Length=51567 Score = 84.2 bits (92), Expect = 2e-11 Identities = 226/335 (67%), Gaps = 18/335 (5%) Strand=Plus/Minus Query 40693 TCATAGTAGTCTTGTAGGTACCAACCTTTTTTCTGCTTAACCTCGTAAGGGTCAAATAAA 40752 || ||| | |||||||| | ||| || | || | || || || || ||||| | Sbjct 46308 TCGTAGCAATCTTGTAGTTTCCATCCCATAAACTTTTCTACTTCATACGGACAAAATAGA 46249 Query 40753 TACCATTCCCCTCTATTCTCTACTGC-TTC-CATAAATAAATCAGGAATAGAAACAGAAG 40810 | ||| || || | |||||| | || ||| |||||||||||| |||||| || ||| Sbjct 46248 TGCCACTCTCCG-TCTTCTCT-CAGCGTTCTCATAAATAAATCTGGAATA----CATAAG 46195 Query 40811 TAAA----AATGTCATGAGCTCGTAAACGTTGGTCTCCGTTGTTTAGTCTTAAATCCAGA 40866 || ||| |||||||||||| || |||||||||| | |||| || || || Sbjct 46194 CCAAGGTGAATCTCATGAGCTCGTTCTTTTTCGTCTCCGTTGCTAAGTCGTAGGTCTAGG 46135 Query 40867 AAAGCTTCTATATCTTTGTGGAAAACATCTAACGTTACAGTTATAGCGCCTTTTCTTGCT 40926 || |||| | ||||||||||| | || | || | || ||| || || ||| Sbjct 46134 AAGGCTTGCACGTCTTTGTGGAAGATGTCAAGATAAACCGCTACAGCTCCAGATC--GCT 46077 Query 40927 --CCTAGTTGGTCTACACTAACAGCCGTGTTATTCAACTGTTTAATCCAAGGTACTGTTC 40984 |||| ||||||||| ||||| ||||| || | ||| |||||||||||| || Sbjct 46076 TACCTAATTGGTCTACTGAGACAGCTGTGTTGTTTAGTTGTCGAATCCAAGGTACAACTC 46017 Query 40985 CTCCACTAGCACC-GAGAACTCCTCTAATGGGTGC 41018 | || || || || | ||| ||| | ||| || || Sbjct 46016 CACCGCTTGCTCCAGCGAA-TCCACGAATAGGAGC 45983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420746816960604