Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_024369.2
Length=41569
Score E
Sequences producing significant alignments: (Bits) Value
seq104206 116 1e-21
>seq104206
Length=286
Score = 116 bits (128), Expect = 1e-21
Identities = 187/265 (71%), Gaps = 4/265 (2%)
Strand=Plus/Minus
Query 38242 CAAGATCCAGAGGTGCGCTATCTACCAAGCGGCGGCGCAGTGGCAAACATCACAATAGCA 38301
|||||||| || || || ||| | || | || || || | || || ||| |||||
Sbjct 286 CAAGATCCTGAAGTTCGTTATATGCCTAATGGTAATGCGGTAGTGAATATGACATTAGCA 227
Query 38302 ACGTCTGAGGTTTGGCGGGATAAGCAAACCGGACAGCCAAAAGAGAAAACAGAGTGGCAC 38361
|| || || |||| ||||| | || ||| | ||||| ||||| || |||||
Sbjct 226 ACTTCAGAAAATTGGAAAGATAAAAATACTGGAGAAAATAAAGAAAAAACTGAATGGCAT 167
Query 38362 CGAGTTACTTTGTTTGGGAAGCTGGCTGAAGTTGCTGGCGAATACCTTCGAAAAGGATCT 38421
|| | ||| ||||| || | |||||| |||| |||||||| ||||||||||| |||
Sbjct 166 AGAATAGTTTTATTTGGTAAATTAGCTGAAATTGCAGGCGAATATCTTCGAAAAGGTTCT 107
Query 38422 CATGTTTATATTGAAGG-CCAGCTTG-AAACTAAGAAGTGGCGGGATCAAAGCGGTCAGG 38479
|| || ||||||||||| || ||| |||||| || |||| |||||||| ||| |
Sbjct 106 CAAGTATATATTGAAGGATCA--TTGCAAACTAGAAAATGGCAGGATCAAAATGGTTTAG 49
Query 38480 ACCGATACACAATAGGCATTGTGGT 38504
| || ||||| | || ||||| ||
Sbjct 48 AACGCTACACTACAGAAATTGTTGT 24
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 132477466649416
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |