Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_024369.2 Length=41569 Score E Sequences producing significant alignments: (Bits) Value seq104206 116 1e-21 >seq104206 Length=286 Score = 116 bits (128), Expect = 1e-21 Identities = 187/265 (71%), Gaps = 4/265 (2%) Strand=Plus/Minus Query 38242 CAAGATCCAGAGGTGCGCTATCTACCAAGCGGCGGCGCAGTGGCAAACATCACAATAGCA 38301 |||||||| || || || ||| | || | || || || | || || ||| ||||| Sbjct 286 CAAGATCCTGAAGTTCGTTATATGCCTAATGGTAATGCGGTAGTGAATATGACATTAGCA 227 Query 38302 ACGTCTGAGGTTTGGCGGGATAAGCAAACCGGACAGCCAAAAGAGAAAACAGAGTGGCAC 38361 || || || |||| ||||| | || ||| | ||||| ||||| || ||||| Sbjct 226 ACTTCAGAAAATTGGAAAGATAAAAATACTGGAGAAAATAAAGAAAAAACTGAATGGCAT 167 Query 38362 CGAGTTACTTTGTTTGGGAAGCTGGCTGAAGTTGCTGGCGAATACCTTCGAAAAGGATCT 38421 || | ||| ||||| || | |||||| |||| |||||||| ||||||||||| ||| Sbjct 166 AGAATAGTTTTATTTGGTAAATTAGCTGAAATTGCAGGCGAATATCTTCGAAAAGGTTCT 107 Query 38422 CATGTTTATATTGAAGG-CCAGCTTG-AAACTAAGAAGTGGCGGGATCAAAGCGGTCAGG 38479 || || ||||||||||| || ||| |||||| || |||| |||||||| ||| | Sbjct 106 CAAGTATATATTGAAGGATCA--TTGCAAACTAGAAAATGGCAGGATCAAAATGGTTTAG 49 Query 38480 ACCGATACACAATAGGCATTGTGGT 38504 | || ||||| | || ||||| || Sbjct 48 AACGCTACACTACAGAAATTGTTGT 24 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132477466649416