Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_024383.1 Length=135831 Score E Sequences producing significant alignments: (Bits) Value seq78791 100 2e-16 seq151743 95.1 1e-14 >seq78791 Length=51567 Score = 100 bits (110), Expect = 2e-16 Identities = 307/464 (66%), Gaps = 18/464 (4%) Strand=Plus/Plus Query 94044 TCCAGTTGTTTTATAGATACGGTAGATGATAGTTTGCAAGGTATTTACGATAGCAATACA 94103 || || ||||| || || ||| |||| ||| | | | ||||| ||| | ||| Sbjct 45854 TCAAGCTGTTTCATTGACACGTTAGACGATTCTCTTGAGGGTATCTACTTGAACAACTTT 45913 Query 94104 GATGTTGCTAGAGTTTCTAAGCAAGGCGGAGGCGTAGGAGTCTATATAGGCAATGTAAGG 94163 ||||| ||| || || |||| ||||| || | ||||| ||| || ||| | | Sbjct 45914 GATGTAGCTCGACTTAGTAAGTCTGGCGGTGGACTTGGAGTATATGCTGGAAATATTCGT 45973 Query 94164 TCGTCAGGAGCACCTATTAGAGGAGTTCTC-GGTGCTAGTGGGGGAACGGTACCTTGGAT 94222 | || || |||||| | ||| ||| | || || || || ||| ||||||||||| Sbjct 45974 GCTCTTGGTGCTCCTATTCGTGGA-TTCGCTGGAGCAAGCGGTGGAGTTGTACCTTGGAT 46032 Query 94223 TAAACAATTAAACAATACGGCTGTTAGTGTAGACCAGCTAGG--AGCAAGAAAAGGCGCT 94280 | |||| ||||||| || ||||| |||||||| |||| ||| || || ||| Sbjct 46033 TCGACAACTAAACAACACAGCTGTCTCAGTAGACCAATTAGGTAAGC--GATCTGGAGCT 46090 Query 94281 ATAACTGTAACGTTAGATGTTTTCCACAAAGATATAGAAGCCTTTCTGGATTTAAGACTA 94340 || | || | || | ||||||||||| | ||||||| || || || |||| Sbjct 46091 GTAGCGGTTTATCTTGACATCTTCCACAAAGACGTGCAAGCCTTCCTAGACCTACGACTT 46150 Query 94341 AACAATGGAGACCAACGTTTACGGGCTCACGACATT----TTTACTTCTGTTTCTATTCC 94396 | ||| |||||| || ||| ||||| || ||| || ||| || |||||| Sbjct 46151 AGCAACGGAGACGAAAAAGAACGAGCTCATGAGATTCACCTTGGCTTATG----TATTCC 46206 Query 94397 TGATTTATTTATG-GAA-GCTGTAGAGAATAGAGGGGAATGGTATTTATTTGACCCTTAC 94454 |||||||||||| ||| |||| |||||| | || || ||| || ||||| || || Sbjct 46207 AGATTTATTTATGAGAACGCTG-AGAGAAGA-CGGAGAGTGGCATCTATTTTGTCCGTAT 46264 Query 94455 GAGGTTAAGCAGAAAAAAGGTTGGTACCTACAAGACTACTATGA 94498 || || | || | || ||| | |||||||| | ||| || Sbjct 46265 GAAGTAGAAAAGTTTATGGGATGGAAACTACAAGATTGCTACGA 46308 >seq151743 Length=442 Score = 95.1 bits (104), Expect = 1e-14 Identities = 80/95 (84%), Gaps = 4/95 (4%) Strand=Plus/Plus Query 41136 CCGTGCTAAATCAGG-CGCA--AGCTTGTAAATGCCTAACGACTAAATTTCTAGGTAGCT 41192 |||||||||||||| || | |||| ||||||||||||||||||||||||| ||||||| Sbjct 309 CCGTGCTAAATCAGCTCGTATGAGCT-GTAAATGCCTAACGACTAAATTTCTGGGTAGCT 367 Query 41193 AACCAAATGGGGTTAGTGAGAACTAGATAAGAAAA 41227 |||||| |||||||||| ||||||||||| Sbjct 368 GGTAAAATGGTACTAGTGAGAACCAGATAAGAAAA 402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433119190441536