Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_024387.1 Length=43767 Score E Sequences producing significant alignments: (Bits) Value seq1367 111 4e-20 seq99429 82.4 2e-11 >seq1367 Length=293 Score = 111 bits (122), Expect = 4e-20 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 40255 GAATTTGAATTCACGCCAGAGTTCAAAATTTGGATGGCAACTAATCACAAACCGATTATT 40314 || || ||||||| ||||| |||||| ||||| || ||||||| ||||| || |||||| Sbjct 282 GAGTTCGAATTCAAACCAGAATTCAAACTTTGGCTGTCAACTAACCACAAGCCAATTATT 223 Query 40315 CGAGGTAGAGACGATGGGATATGGCGCAGATTACATTTAGTTCCATTTACTGTGAAAATA 40374 |||| | ||| ||||| || ||||| ||||| | ||||||||||| || || Sbjct 222 AGAGGAACAGATGATGGTATCTGGCGGAGATTGATGCTGATTCCATTTACTCATCAAGTA 163 Query 40375 CCCGACGCAAAGGTCGACAAGCAGTTAAAATATAAACTTCGTCGAGAATTAACAGGTATT 40434 || | | |||| ||||| | | ||| ||||| || |||| || || || Sbjct 162 CCAGTGGATCAGGTAGACAAAAGACTCACATACAAACTCGAACGTGAATCAATCGGAATC 103 Query 40435 TTAAATTGGGCAGTAGAAGGGTTCCTTAAATGGCAAAGGGAAGGCTTAG 40483 |||||||||| || || || ||||||||||| | ||||| |||| Sbjct 102 CTAAATTGGGCCGTTGATGGAGCACTTAAATGGCAGCGTGAAGGATTAG 54 >seq99429 Length=368 Score = 82.4 bits (90), Expect = 2e-11 Identities = 134/192 (70%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 39848 TTGAATATACAGACAAGATTGACGCTCCTTTATGGCAAGAGTTCTTAAATGATATTTTTG 39907 |||||||| |||||| |||| |||| |||||||| || || ||| | | ||| Sbjct 282 TTGAATATTCAGACACTGTTGAGTGTCCTGAATGGCAAGCTTTTTTGAATCAGACTTTCA 223 Query 39908 CAGGCGATAAAGAGTTAATCACTTATATTCAAAAAGCTGTTGGATACTCACTTTCAGGCT 39967 || || || || ||||| || ||||||||||| || || || ||| | |||| | Sbjct 222 ATGGAGACAACGAATTAATTGACTACATTCAAAAAGCGGTCGGGTATTCATTAACAGGTT 163 Query 39968 CCACATCTGAA---CAAGTTATGTTTATCCTTTTTGGAAATGGTCGAAATGGTAAGTCCG 40024 | | |||| || || ||||||||||||| ||| || ||||| ||||| || | Sbjct 162 C---AGTTGAAGAGCAGGTCATGTTTATCCTTTACGGATCAGGGCGAAACGGTAAATCTG 106 Query 40025 TTTTCTTAGATA 40036 ||||| | |||| Sbjct 105 TTTTCATGGATA 94 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139488746697944