Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_024792.1 Length=160281 Score E Sequences producing significant alignments: (Bits) Value seq158858 114 1e-20 seq149378 93.3 4e-14 >seq158858 Length=235449 Score = 114 bits (126), Expect = 1e-20 Identities = 307/465 (66%), Gaps = 11/465 (2%) Strand=Plus/Minus Query 66667 GCTTTTTTATATCCGTTTCCTTTTTGGCTAAAGAAGTCGAATGACTTTGTTTTTGTGTTA 66726 |||||| |||||| |||||||| ||||| || | || |||||||| | Sbjct 230793 GCTTTTACATATCCATTTCCTTTAACAGAGAAGAAATCATGTTGTTTCGTTTTTGTTTGT 230734 Query 66727 AGCCCGTTGAGAACGATAGGGTTAACGTCCTCTTCTTCAAAGATTCCTTCGTACCCTAGG 66786 || || || ||||||| || || || | ||| || |||||| | ||||| |||| Sbjct 230733 AGTCCATTTTGAACGATTGGATTTACATACTCATCATCAAAGTATTGGTCGTATCCTAAA 230674 Query 66787 TTATTGAGCGCTTTGTTGCCATTATATCGAACAAACTTCTTAACATC--CGTAGACAGCC 66844 || | | ||||| || | ||||| || | ||||| || || || || | | Sbjct 230673 TTCATCATTGCTTTATTTGCGTTATAACGTAGGAACTTATTTACTTCTTCGATCATGTCT 230614 Query 66845 CTACAGCGTCG----TACACATCAGCGGTGTACTCTAGTTCATTTTCGTACAACGTTTGG 66900 | | || | ||||||||| ||||| |||| |||||| |||| ||| ||| Sbjct 230613 TTTCCAAGTGGAGCATACACATCATTCGTGTAATCTAATTCATTCGCGTATAACATTTCT 230554 Query 66901 AACAAGTCTAATGCGTAAGTATGAAGCTCTTTTTGT---GTTTTAGCATCCTGTTTATTG 66957 || || | | ||| | ||| | ||||| ||| | || || | || || | Sbjct 230553 AATAATTGAATTGCTTCTTTATCTACCTCTTGCTGTTCAGCTTCAGTAAGTTGGTTTTCA 230494 Query 66958 TAAATCTCTTGAGCCAACATACCGAC-GTAAGCTCCGTGAATTGCTTCGTCTCGGATGAT 67016 |||||||||||||| || ||||| | || | | ||||| ||||| || |||| | ||| Sbjct 230493 TAAATCTCTTGAGCGAAGATACCACCTGTTA-CCCCGTGGATTGCCTCATCTCTTAAGAT 230435 Query 67017 CAAGTTAATAATTTCTCCGGAGTTCATCAGTTTACCTTGTCCGTAGAAGTATAACGGGTA 67076 || ||| ||||| ||||| | || | |||||||| ||| ||||||| || Sbjct 230434 TAATGCAATGATTTCACCGGAAGCAGTTAGCTGTCCTTGTCCCGCTAAGAATAACGGATA 230375 Query 67077 GTAGAAACCACTGTAGAACAAGAAGCTCTCTAGGAAAACAGAAGC 67121 | |||| || |||||||| || ||||| |||| ||| || || || Sbjct 230374 GAAGAACCCGCTGTAGAATAAAAAGCTTTCTAAGAATACTGATGC 230330 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 65203 TCTGTAGGGAACACATAGTAGTTATAGTGACCTACAAAACTCTTCTTAGCGGTAGACTTG 65262 ||| |||| | ||| |||| ||| | || || |||| | ||||| || || | Sbjct 216401 TCTTTAGGCATTACAAAGTAATTAAAATGTCCGCAAAAAGTTTTCTTTGCTTTACTTCTA 216342 Query 65263 AAGTCTGCGTAGGACACCTTAAGTTCAAAGCATCTCCATATACCTTTAGTATCGTAGGTC 65322 || || || || || |||| |||| |||||| ||| ||||| ||||| ||||| ||| Sbjct 216341 AAATCAGCAAGTGAAACTTTAATTTCATAGCATCGCCAAATACCCTTAGTGTCGTAAGTC 216282 Query 65323 ATATAATCGACTCGTTCTTTGCC 65345 ||||||||||||||||| || || Sbjct 216281 ATATAATCGACTCGTTCATTTCC 216259 >seq149378 Length=35185 Score = 93.3 bits (102), Expect = 4e-14 Identities = 165/238 (69%), Gaps = 6/238 (3%) Strand=Plus/Minus Query 123181 TAAAGTCAGCTTGTACACCGATAGGCATGAATGCATCAGTAGCAATACCATAACCTTTAC 123240 |||||||||| | ||||| |||||||| | |||||||| |||| ||| |||||| || Sbjct 26299 TAAAGTCAGCCTTAACACCAATAGGCATATAAGCATCAGTTGCAACACCGAAACCTTCAC 26240 Query 123241 CAACGATAACAGATGCTTTGTTAAGGATTTGTTCAGTAAGTCCTTCGCCTCGAATGTCAA 123300 ||| |||||| ||||||||||| | |||| || | | || | ||| || ||||| Sbjct 26239 CAATCTTAACAGCGGCTTTGTTAAGCACTTGTGGCGTTAATTCTCCACCTTCAAGGTCAA 26180 Query 123301 GAACGTTAGTCTTCTGATCAATAAGTTTGTGTAAACCGTCAAACTCTAGTCCTGCTTGGT 123360 |||| | ||||||||| || || || || ||||| || || || | | Sbjct 26179 TGTGGTTA---TGAGCATCAATAAGCTTTTGCAAGCCATCAAATTCCAGACC--ATCGCC 26125 Query 123361 CGTCTAACTCGTTAGATAGAGCAGCGTCTCCGTAGAATGTAGCCCACTCAATAGTCTT 123418 | | | || | || || ||| ||| || ||||| ||||||| |||||||| || Sbjct 26124 CTTTTCAC-CAGCAGTTAAGTCAGAGTCACCATAGAAGATAGCCCATTCAATAGTTTT 26068 Score = 86.0 bits (94), Expect = 6e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 126407 CCAGTTGCTCCTCCTCGGTTCGGGAAGTTGATTTCTGATGGGTCAATAGAATAGATAGAA 126466 ||||| ||||| || || || || ||||| |||||| ||| | ||| || | | | Sbjct 23288 CCAGTAGCTCCCCCACGATTAGGAAAGTTAATTTCTTCTGGCTGAATTTGGTAAACGGCA 23229 Query 126467 CAGATAACGTTGATCAGGTAGTTAAGCCACTTCTCAAACTCCATATCTTTAGAAGACTGG 126526 ||||| | || |||||||| | |||| ||||| |||||||| ||| || ||| Sbjct 23228 GCAATAACATAAATTAGGTAGTTCAAAAACTTTTCAAATTCCATATCCTTACTAGTCTGT 23169 Query 126527 GTCATGTTAACGAATTTGACATCCTCAGCAGTAATAACAGGAATTTTCCATGCTCCATTG 126586 ||||||||||| || || |||| | | | | ||| | |||| ||||| || ||||| Sbjct 23168 GTCATGTTAACAAACTTAGCATCTTGACCTGAAATCATTGGAACCTTCCAAGCGCCATTC 23109 Query 126587 ATTCC 126591 || || Sbjct 23108 ATACC 23104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511058364722080