Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_024794.1 Length=167318 Score E Sequences producing significant alignments: (Bits) Value seq26767 158 1e-33 seq249645 109 6e-19 seq244327 100 3e-16 >seq26767 Length=1149 Score = 158 bits (174), Expect = 1e-33 Identities = 278/404 (69%), Gaps = 6/404 (1%) Strand=Plus/Plus Query 141927 TTTTCATCCACACCTTTGTTATTTTTCAGAACTAATAGGTTCTCTACTTCTAAGTGCCAC 141986 ||||| || | || | |||||||| | |||||||| | || | ||| || ||||| Sbjct 79 TTTTCTTCAATGCCCCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCAT 138 Query 141987 ATCGGATAATACGCTGTAGCAGCACCGCCGCGAATACCACCTTGAGAACAAGATTTTACT 142046 || |||||| | || || || || || | || || ||||||||||| |||||||| Sbjct 139 ATTGGATAAAATATAGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACA 198 Query 142047 GCAGTTTGGAAATGTTTCCAGAATGGAATAACACCTGTATGTCGAACTTCACCCATACCG 142106 ||| |||| |||||||| | || |||||| ||| ||||| |||| || | | Sbjct 199 GCACTTTGAAAATGTTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTA 258 Query 142107 ATCTTAGAACCTTCTGCACGAAGCATGCCAACGTTGATACCGATACCAGCTCGTTTAGAA 142166 || | |||| ||||||||| | ||| | || ||||| || || ||||||| |||| Sbjct 259 ATAGGACTACCTACTGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAA 318 Query 142167 ATATATTCGATAATTGATGCTGAAGTTTTGTTAATAGATTTTAACGAATCACCGGCTTCA 142226 | ||||| | ||| || | ||| ||||||||| | || |||| | |||| Sbjct 319 ACATATTTTACAATAGAACTAGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCA 378 Query 142227 ATAACTACAC---AACTAGAGAACTGGCGAGTCGGAGTACGAGCACCTGCCATAATTGGA 142283 || | |||| | ||| || || ||||| ||||| | | | || | ||||||||| Sbjct 379 ATTAAAACACATGAGCTA---AATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGT 435 Query 142284 GTAGGCAATGAAACTTGATGAGTAGAAACGGCATCATAAAAACG 142327 || || || |||| || ||| |||| ||||| ||||||||| Sbjct 436 GTCGGTAAAGAAATTTTGAAAGTTGAAATGGCATTATAAAAACG 479 >seq249645 Length=476466 Score = 109 bits (120), Expect = 6e-19 Identities = 300/453 (66%), Gaps = 14/453 (3%) Strand=Plus/Minus Query 141903 CCGTAGTCCATATGTCGAATACGGTTTTCATCCACACCTTTGTTATTTTTCAGAACTAAT 141962 |||||||||||||| || | |||||| || || ||||| ||||||||| || || | | Sbjct 264944 CCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTTTTGAGTACCAGT 264885 Query 141963 AGGTTCTCTACTTCTAAGTGCCACATCGGATAATACGCTGTAGCAGCACCGCCGCGAATA 142022 | ||| |||||||| ||||| | || || || || ||||||||||| || | Sbjct 264884 AATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGCACCGCCACGTACG 264825 Query 142023 CCACCTTGAGAACAAGATTTTACTGCAGTTTGGAAATGTTTCCAGAATGGAATAACACCT 142082 |||||||| || || |||| || || |||||||| ||| | || |||||| || Sbjct 264824 CCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAAAGGAATACAGCCA 264765 Query 142083 GTATGTCGAACTTCACCCATACCGATCTTAGAACCTTCTGCACGAAGCATGCCAACGTTG 142142 ||||| | ||||||| || ||| ||| ||||| | || ||||| Sbjct 264764 GTATGCTGTGCTTCACCGCCACGGATAGGGCTACCAAGGGCACGGATACGACCTGCGTTG 264705 Query 142143 ATACCGATACCAGCTCGTTTAGAAATATA---TTCGATAATTGATGCT-GAAGTTTTGTT 142198 || ||||||||||| || | || | ||| | ||| || ||| | || ||| Sbjct 264704 ATGCCGATACCAGCACGCTGTGACACATAGCGTACGA----TGGCGCTAGTGGTGGCGTT 264649 Query 142199 AATAGATTTTAACGAATCACCGGCTTCAATAACTACACAACTAG-AGAACTGGCGAGTCG 142257 ||||| | ||| |||||| ||| || | || | || || ||||| || | | Sbjct 264648 GATAGAGTCTAAGCTATCACCACATTCGATTAAGACGC-ACGAGCTAAACTGACGCGATG 264590 Query 142258 GAGTACGAGCACCTGCCATAATTGGAGTAGGCAATGAAACTTGATGAGT--AGAAACGGC 142315 | ||||| |||||| ||| ||||| || || | ||| | || ||| | || || Sbjct 264589 GCGTACGCACACCTGACATGATTGGCGTTGGTAGTGAGATTT--TGAATTCTGAGGTCGC 264532 Query 142316 ATCATAAAAACGAATAATATGTTTCAAACGGTC 142348 |||||| || || | | || | ||||||||| Sbjct 264531 ATCATAGAAGCGTTTGACATAATGCAAACGGTC 264499 >seq244327 Length=1302 Score = 100 bits (110), Expect = 3e-16 Identities = 259/389 (67%), Gaps = 12/389 (3%) Strand=Plus/Plus Query 140162 AATCTCATCAAATACCTTCGATGGATCAGTATAAAGATTTCGCATAATATGAGTATATGA 140221 ||| |||||||||| |||||| | || || ||||| |||||||||||||| || Sbjct 803 AATATCATCAAATATTAAAGATGGAGAATTAACAATATTTCTAATAATATGAGTATAAGA 862 Query 140222 ACGAGAGTGAATAGTTTCACTGAATGTCCATGTAGCAACCCATGTATCTAATGAAGGGTC 140281 ||| |||||||||||||| || | |||||| ||| ||| || |||||| || Sbjct 863 ACGTGAGTGAATAGTTTCCGAAAAAGACCATGTTTCAATCCAGGTTTCTAATTCCGGAAT 922 Query 140282 AGAAATCAGTGCCATAAGTACCGCAGATGGGGC-CCTGCCTTGGATAGAATCTAATAATG 140340 |||||| | || | || | | | | || | || ||||| ||||| |||||||||| Sbjct 923 AGAAATAATTGGTAGAA-AAGCAATGTTAGGACTTCTTCCTTGAATAGAGTCTAATAATG 981 Query 140341 ATTGATACTTAAGGTTGTTTGTAAAGATGTCCTGTTGGAACTGAGGAAGCTTATTGAACT 140400 |||||| || | || | ||| || | | || | ||| | || ||||| Sbjct 982 TTTGATATTTTAAATTACTAAGAAAAATATGTTTTTCATGTTCAGGTAAATT-TTGAAAA 1040 Query 140401 GCGCAGAGTCCAACATCAAG-----TTTACCTCTTCAGGGCGCCAGAAAAATGACAATTG 140455 | | || | | || || | || |||||||| | ||| ||||| || | ||| Sbjct 1041 TC---TATTCTATC-TCGAGAGAGATCTATTTCTTCAGGTCTCCAAAAAAAAGAGAGTTG 1096 Query 140456 CTTTTCGGTCAAATCTTCAAAAACTTTATGGCGTTGAATATCATAACGCGCAATACCAAG 140515 ||||| | || | |||||||| |||| ||| |||||| || |||||| | Sbjct 1097 TTTTTCAATTAATTTTTCAAAAATATTATATTTTTGCTGATCATATCGGGCAATATTGAC 1156 Query 140516 ACCTGAACCAAAAAACATAGGTTCTTTTA 140544 | | ||||||||||||||||| |||| Sbjct 1157 AGGTTGTCCAAAAAACATAGGTTCCTTTA 1185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 533501545384640