Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq78792 129 4e-25
seq167623 123 2e-23
seq236154 118 7e-22
seq66861 114 8e-21
seq26664 114 8e-21
seq54724 113 3e-20
seq153189 111 1e-19
seq210337 104 2e-17
seq91578 102 5e-17
seq26661 102 5e-17
>seq78792
Length=14290
Score = 129 bits (142), Expect = 4e-25
Identities = 167/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|| ||||| || || | || ||||| || || || || || ||||||||||||| |
Sbjct 11669 CCTCCTCTTAATCGCAGAACTAAATGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGCG 11610
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
||||| | | |||| |||||||||||||||||||| |||||||| ||||| || | ||
Sbjct 11609 AGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCAAAGATCAAACGTTGCTGGTCCGGTGGA 11550
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||||| ||||| || ||| |||| |||| ||| | ||||| ||||| ||
Sbjct 11549 ATTCCTTCCTTGTCTTGGATCTTCGCTTTC-ACATTGTCGATTGTGTCCGAAGATTCAAC 11491
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | || || || || || |||| ||||| || |||||||||||
Sbjct 11490 CTCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 11443
>seq167623
Length=7090
Score = 123 bits (136), Expect = 2e-23
Identities = 167/230 (73%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580
||||||| | | ||| | || | ||| || || || || || |||||||||||||
Sbjct 2621 CACCACCACGGAGACGAAGGACGAGATGAAGCGTCGATTCCTTCTGGATGTTGTAATCGG 2562
Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640
||| || || |||| || | |||||||||||| |||||||| ||||||||||| | |
Sbjct 2561 CGAGAGTACGGCCGTCTTCGAGTTGTTTTCCGGCGAAAATCAATCGCTGCTGATCCGGTG 2502
Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699
| | ||||| ||||| || ||| | || |||| ||| | ||| ||| ||||||
Sbjct 2501 GGATTCCTTCCTTGTCTTGGATCTTC-GCTTTGACATTGTCGATGGTATCGGATGATTCG 2443
Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| || | || ||||| || || |||| ||||| || |||||||||||
Sbjct 2442 ACCTCGAGAGTTATCGTCTTCCCGGTTAGGGTTTTCACGAAGATCTGCAT 2393
>seq236154
Length=204
Score = 118 bits (130), Expect = 7e-22
Identities = 107/135 (79%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||||| | ||| |||||||| || ||||| || || || |||||||| |||||
Sbjct 34 ACCACCTCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGA 93
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
||||||||| |||| || | ||| ||||||||||| |||||||| || || ||| | ||
Sbjct 94 AAGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGG 153
Query 33642 CACACCTTCTTTGTC 33656
| ||||||||||||
Sbjct 154 GATACCTTCTTTGTC 168
>seq66861
Length=20397
Score = 114 bits (126), Expect = 8e-21
Identities = 142/192 (74%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618
|| || || |||||||| |||| ||| || ||| |||| || | |||||||||||| |||
Sbjct 17450 TCCTTCTGGATGTTGTAGTCGGCGAGAGTACGTCCGTCTTCAAGTTGTTTTCCGGCGAAA 17391
Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678
||||| || |||||||| | || | ||||| ||||| || ||| | | ||||
Sbjct 17390 ATCAATCGTTGCTGATCCGGTGGGATTCCTTCCTTGTCTTGGATCTTC-GCCTTGACATT 17332
Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737
||| | || ||| |||||| || || | ||| ||||| || || |||| ||||| ||
Sbjct 17331 GTCGATCGTATCGGATGATTCAACCTCGAGCGTTATCGTCTTCCCCGTTAGGGTTTTCAC 17272
Query 33738 AAAGATCTGCAT 33749
|||||||||||
Sbjct 17271 GAAGATCTGCAT 17260
>seq26664
Length=6282
Score = 114 bits (126), Expect = 8e-21
Identities = 165/230 (72%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580
||||||| | | ||| | ||| | ||| || || || || || |||||||| ||||
Sbjct 5644 CACCACCACGGAGACGAAGCACGAGATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGG 5703
Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640
||| || ||| |||| || | ||||||||| || || ||||| |||||||| || | |
Sbjct 5704 CGAGAGTACGTCCGTCTTCGAGTTGTTTTCCCGCGAAGATCAATCGCTGCTGGTCCGGTG 5763
Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699
| | ||||| ||||| || ||| ||| | ||| ||| | ||| ||| ||||||
Sbjct 5764 GGATTCCTTCCTTGTCTTGGATCTTCGCTTTGA-CATTGTCGATGGTATCGGATGATTCG 5822
Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| || | || ||||| || || |||| ||||| || |||||||||||
Sbjct 5823 ACCTCGAGAGTTATCGTCTTCCCGGTTAGGGTTTTCACGAAGATCTGCAT 5872
>seq54724
Length=7877
Score = 113 bits (124), Expect = 3e-20
Identities = 167/233 (72%), Gaps = 8/233 (3%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | | ||| |||||||| || ||||| |||||| || || ||||| ||||
Sbjct 2102 ACCACCACGAAGACGCAACACCAAGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCGGC 2043
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| || | |||| || | ||| ||||||||||| ||||| | |||||| || | ||
Sbjct 2042 CAGAGTTCTGCCGTCCTCGAGTTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCCGGAGG 1983
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697
| |||||||||||| || || |||| || | ||| | |||||| ||| |
Sbjct 1982 GATACCTTCTTTGTCCTGGATCTTGGCTTTC-ACGTTGTCGATGGTGTCTGAGCT---CT 1927
Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || || | || || |||||||| || || || || |||||||||||||||
Sbjct 1926 CAACCTCGAGGGTAATGGTTTTACCGGTCAAGGTCTTGACAAAGATCTGCATA 1874
>seq153189
Length=17048
Score = 111 bits (122), Expect = 1e-19
Identities = 166/232 (72%), Gaps = 8/232 (3%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | | ||| |||||||| || || || ||| || || |||||||| ||||
Sbjct 14508 ACCACCACGAAGACGCAACACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGC 14449
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
| |||||| | || |||||||| |||||||| || ||||| | ||||||||| | ||
Sbjct 14448 CAAGGTGCGTCCATCTTCCAATTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGG 14389
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697
| |||||| ||||| || || ||| ||||| ||| | ||||| |||| |
Sbjct 14388 AATACCTTCCTTGTCCTGGATCTTGGCTTT-AACATTGTCGATCGTGTCCGAGCTT---T 14333
Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|||| || | ||||| || || || || | || || || |||||||||||
Sbjct 14332 CCACCTCGAGGGTGATTGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 14281
Score = 95.1 bits (104), Expect = 8e-15
Identities = 163/233 (70%), Gaps = 8/233 (3%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | | |||||||||||| || | ||| ||| ||||| ||||||||||| |
Sbjct 14736 ACCACCACGGAGACGTAACACCAAGTGCAAAGTTGACTCCTTTTGAATGTTGTAATCCGC 14677
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|||||||| | || || | ||||| || || || || | ||||||||| || | ||
Sbjct 14676 AAGTGTGCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCCGGTGG 14617
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697
| ||||| ||||| || || | | || | ||| | |||||| ||| |
Sbjct 14616 GATCCCTTCCTTGTCCTGGATCTT-GGCCTTGACGTTGTCAATGGTGTCTGAGCT---CT 14561
Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
|||| || | || || || ||||| || || ||||| || ||||||||||||
Sbjct 14560 CCACCTCGAGGGTAATAGTCTTACCAGTCAAGGTTTTGACGAAGATCTGCATA 14508
Score = 82.4 bits (90), Expect = 5e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | | |||||||||||| || | ||| ||| ||||| ||||||||||| |
Sbjct 14964 ACCACCACGGAGACGTAACACCAAGTGCAAAGTTGACTCCTTTTGAATGTTGTAATCCGC 14905
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|||||||| | || || | ||||| || || || || | ||||||||| || | ||
Sbjct 14904 AAGTGTGCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCCGGTGG 14845
Query 33642 CACACCTTCTTTGTC 33656
| ||||| |||||
Sbjct 14844 GATCCCTTCCTTGTC 14830
>seq210337
Length=1863
Score = 104 bits (114), Expect = 2e-17
Identities = 104/135 (77%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
||||||||| | ||| | ||||| ||||||||| ||||||||| ||||||||||| |
Sbjct 1041 ACCACCTCTGAGACGAAGTACCAAGTGTAGAGTGGACTCTTTTTGGATGTTGTAATCCGC 1100
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| || ||| | || || | ||| || |||||||| || | | ||||||||| | ||
Sbjct 1101 AAGAGTACGTCCATCTTCAAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGG 1160
Query 33642 CACACCTTCTTTGTC 33656
| ||||||||||||
Sbjct 1161 GATACCTTCTTTGTC 1175
>seq91578
Length=16840
Score = 102 bits (112), Expect = 5e-17
Identities = 162/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580
||||||| | | ||| | || | ||| || || || || || |||||||| ||||
Sbjct 240 CACCACCACGGAGACGAAGGACGAGATGAAGTGTTGATTCCTTCTGGATGTTGTAGTCGG 299
Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640
||| || ||| |||| || | |||||||||||| |||||||| || || ||||| | |
Sbjct 300 CGAGAGTACGTCCGTCTTCGAGTTGTTTTCCGGCGAAAATCAATCGTTGTTGATCCGGTG 359
Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699
| | ||||| ||||| || || | | |||| ||| | || || ||||||
Sbjct 360 GGATTCCTTCCTTGTCTTGGATCTT-AGCCTTGACATTGTCGATCGTATCCGATGATTCA 418
Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| || | ||| ||||| || || |||| ||||| || |||||||||||
Sbjct 419 ACCTCGAGCGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 468
>seq26661
Length=2801
Score = 102 bits (112), Expect = 5e-17
Identities = 162/231 (70%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | | ||| |||||||| || ||||| ||| ||||| |||||||| ||||
Sbjct 1857 ACCACCACGAAGACGCAACACCAAGTGAAGAGTTGACTCCTTTTGGATGTTGTAGTCGGC 1798
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| || || |||| || | ||| |||||||| || ||||| | |||||| || | ||
Sbjct 1797 TAGAGTTCGACCGTCTTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGAGG 1738
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGAT---TC 33698
| |||||| ||||| ||||| ||||| || | |||||| ||| ||
Sbjct 1737 GATACCTTCCTTGTCCTGGATTTTTGCTTTCACGTTATCAATGGTGTC---TGAGCTCTC 1681
Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| || | || || || || || || || || || ||||||||||||||
Sbjct 1680 GACCTCGAGGGTAATAGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 1630
Score = 86.0 bits (94), Expect = 4e-12
Identities = 161/233 (69%), Gaps = 8/233 (3%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | | ||| || ||||| || ||||| || || || ||||| || ||||
Sbjct 2085 ACCACCACGGAGACGCAAGACCAAGTGCAGAGTAGATTCCTTCTGAATGTTATAGTCGGC 2026
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
||||| || | || || | || || || || || || | ||||||||| || | ||
Sbjct 2025 CAGTGTACGGCCATCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGG 1966
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697
| |||||||||||| ||| || |||| || | ||| | |||||| ||| |
Sbjct 1965 AATACCTTCTTTGTCCTGAATCTTAGCTTTC-ACGTTGTCGATGGTGTCTGAGCT---CT 1910
Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
|||| |||| || || || ||||| || || || || || ||||| ||||||
Sbjct 1909 CCACCTCAAGGGTAATAGTCTTACCAGTCAAGGTCTTCACGAAGATTTGCATA 1857
Score = 82.4 bits (90), Expect = 5e-11
Identities = 148/214 (69%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 33537 TAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTC 33596
|| |||||| || || || || ||||| ||||||||||| | | || || | ||
Sbjct 1158 TAGCACCAAGTGAAGCGTTGATTCCTTTTGGATGTTGTAATCCGCCAAGGTACGGCCATC 1099
Query 33597 GTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656
|||||||| ||||| ||||| || | | ||||||||| | || | |||||| |||||
Sbjct 1098 TTCCAATTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGAGGAATACCTTCCTTGTC 1039
Query 33657 GGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCG 33715
|| || || | ||| | ||| | ||||| |||||| || | ||||| |
Sbjct 1038 CTGGATCTT-TGCCTTAACGTTGTCGATCGTGTCAGAACTTTCCACCTCGAGGGTGATAG 980
Query 33716 TTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || || || | ||||| || |||||||||||
Sbjct 979 TCTTTCCGGTGAGAGTTTTCACGAAGATCTGCAT 946
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 327633463253760
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