Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq78792 129 4e-25 seq167623 123 2e-23 seq236154 118 7e-22 seq66861 114 8e-21 seq26664 114 8e-21 seq54724 113 3e-20 seq153189 111 1e-19 seq210337 104 2e-17 seq91578 102 5e-17 seq26661 102 5e-17 >seq78792 Length=14290 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| || || | || ||||| || || || || || ||||||||||||| | Sbjct 11669 CCTCCTCTTAATCGCAGAACTAAATGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGCG 11610 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | | |||| |||||||||||||||||||| |||||||| ||||| || | || Sbjct 11609 AGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCAAAGATCAAACGTTGCTGGTCCGGTGGA 11550 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || ||| |||| |||| ||| | ||||| ||||| || Sbjct 11549 ATTCCTTCCTTGTCTTGGATCTTCGCTTTC-ACATTGTCGATTGTGTCCGAAGATTCAAC 11491 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || || || || |||| ||||| || ||||||||||| Sbjct 11490 CTCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 11443 >seq167623 Length=7090 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | || | ||| || || || || || ||||||||||||| Sbjct 2621 CACCACCACGGAGACGAAGGACGAGATGAAGCGTCGATTCCTTCTGGATGTTGTAATCGG 2562 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 ||| || || |||| || | |||||||||||| |||||||| ||||||||||| | | Sbjct 2561 CGAGAGTACGGCCGTCTTCGAGTTGTTTTCCGGCGAAAATCAATCGCTGCTGATCCGGTG 2502 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| || ||| | || |||| ||| | ||| ||| |||||| Sbjct 2501 GGATTCCTTCCTTGTCTTGGATCTTC-GCTTTGACATTGTCGATGGTATCGGATGATTCG 2443 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || ||||| || || |||| ||||| || ||||||||||| Sbjct 2442 ACCTCGAGAGTTATCGTCTTCCCGGTTAGGGTTTTCACGAAGATCTGCAT 2393 >seq236154 Length=204 Score = 118 bits (130), Expect = 7e-22 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| | ||| |||||||| || ||||| || || || |||||||| ||||| Sbjct 34 ACCACCTCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGA 93 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||||||| |||| || | ||| ||||||||||| |||||||| || || ||| | || Sbjct 94 AAGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGG 153 Query 33642 CACACCTTCTTTGTC 33656 | |||||||||||| Sbjct 154 GATACCTTCTTTGTC 168 >seq66861 Length=20397 Score = 114 bits (126), Expect = 8e-21 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || |||||||| |||| ||| || ||| |||| || | |||||||||||| ||| Sbjct 17450 TCCTTCTGGATGTTGTAGTCGGCGAGAGTACGTCCGTCTTCAAGTTGTTTTCCGGCGAAA 17391 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 ||||| || |||||||| | || | ||||| ||||| || ||| | | |||| Sbjct 17390 ATCAATCGTTGCTGATCCGGTGGGATTCCTTCCTTGTCTTGGATCTTC-GCCTTGACATT 17332 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 ||| | || ||| |||||| || || | ||| ||||| || || |||| ||||| || Sbjct 17331 GTCGATCGTATCGGATGATTCAACCTCGAGCGTTATCGTCTTCCCCGTTAGGGTTTTCAC 17272 Query 33738 AAAGATCTGCAT 33749 ||||||||||| Sbjct 17271 GAAGATCTGCAT 17260 >seq26664 Length=6282 Score = 114 bits (126), Expect = 8e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | ||| | ||| || || || || || |||||||| |||| Sbjct 5644 CACCACCACGGAGACGAAGCACGAGATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCGG 5703 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 ||| || ||| |||| || | ||||||||| || || ||||| |||||||| || | | Sbjct 5704 CGAGAGTACGTCCGTCTTCGAGTTGTTTTCCCGCGAAGATCAATCGCTGCTGGTCCGGTG 5763 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| || ||| ||| | ||| ||| | ||| ||| |||||| Sbjct 5764 GGATTCCTTCCTTGTCTTGGATCTTCGCTTTGA-CATTGTCGATGGTATCGGATGATTCG 5822 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || ||||| || || |||| ||||| || ||||||||||| Sbjct 5823 ACCTCGAGAGTTATCGTCTTCCCGGTTAGGGTTTTCACGAAGATCTGCAT 5872 >seq54724 Length=7877 Score = 113 bits (124), Expect = 3e-20 Identities = 167/233 (72%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| |||||||| || ||||| |||||| || || ||||| |||| Sbjct 2102 ACCACCACGAAGACGCAACACCAAGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCGGC 2043 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | |||| || | ||| ||||||||||| ||||| | |||||| || | || Sbjct 2042 CAGAGTTCTGCCGTCCTCGAGTTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCCGGAGG 1983 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | |||||||||||| || || |||| || | ||| | |||||| ||| | Sbjct 1982 GATACCTTCTTTGTCCTGGATCTTGGCTTTC-ACGTTGTCGATGGTGTCTGAGCT---CT 1927 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | || || |||||||| || || || || ||||||||||||||| Sbjct 1926 CAACCTCGAGGGTAATGGTTTTACCGGTCAAGGTCTTGACAAAGATCTGCATA 1874 >seq153189 Length=17048 Score = 111 bits (122), Expect = 1e-19 Identities = 166/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| |||||||| || || || ||| || || |||||||| |||| Sbjct 14508 ACCACCACGAAGACGCAACACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGC 14449 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | |||||| | || |||||||| |||||||| || ||||| | ||||||||| | || Sbjct 14448 CAAGGTGCGTCCATCTTCCAATTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGG 14389 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | |||||| ||||| || || ||| ||||| ||| | ||||| |||| | Sbjct 14388 AATACCTTCCTTGTCCTGGATCTTGGCTTT-AACATTGTCGATCGTGTCCGAGCTT---T 14333 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || | ||||| || || || || | || || || ||||||||||| Sbjct 14332 CCACCTCGAGGGTGATTGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 14281 Score = 95.1 bits (104), Expect = 8e-15 Identities = 163/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | |||||||||||| || | ||| ||| ||||| ||||||||||| | Sbjct 14736 ACCACCACGGAGACGTAACACCAAGTGCAAAGTTGACTCCTTTTGAATGTTGTAATCCGC 14677 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || || | ||||| || || || || | ||||||||| || | || Sbjct 14676 AAGTGTGCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCCGGTGG 14617 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||||| ||||| || || | | || | ||| | |||||| ||| | Sbjct 14616 GATCCCTTCCTTGTCCTGGATCTT-GGCCTTGACGTTGTCAATGGTGTCTGAGCT---CT 14561 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| || | || || || ||||| || || ||||| || |||||||||||| Sbjct 14560 CCACCTCGAGGGTAATAGTCTTACCAGTCAAGGTTTTGACGAAGATCTGCATA 14508 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | |||||||||||| || | ||| ||| ||||| ||||||||||| | Sbjct 14964 ACCACCACGGAGACGTAACACCAAGTGCAAAGTTGACTCCTTTTGAATGTTGTAATCCGC 14905 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || || | ||||| || || || || | ||||||||| || | || Sbjct 14904 AAGTGTGCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCCGGTGG 14845 Query 33642 CACACCTTCTTTGTC 33656 | ||||| ||||| Sbjct 14844 GATCCCTTCCTTGTC 14830 >seq210337 Length=1863 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | ||| | ||||| ||||||||| ||||||||| ||||||||||| | Sbjct 1041 ACCACCTCTGAGACGAAGTACCAAGTGTAGAGTGGACTCTTTTTGGATGTTGTAATCCGC 1100 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || ||| | || || | ||| || |||||||| || | | ||||||||| | || Sbjct 1101 AAGAGTACGTCCATCTTCAAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGG 1160 Query 33642 CACACCTTCTTTGTC 33656 | |||||||||||| Sbjct 1161 GATACCTTCTTTGTC 1175 >seq91578 Length=16840 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | || | ||| || || || || || |||||||| |||| Sbjct 240 CACCACCACGGAGACGAAGGACGAGATGAAGTGTTGATTCCTTCTGGATGTTGTAGTCGG 299 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 ||| || ||| |||| || | |||||||||||| |||||||| || || ||||| | | Sbjct 300 CGAGAGTACGTCCGTCTTCGAGTTGTTTTCCGGCGAAAATCAATCGTTGTTGATCCGGTG 359 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| || || | | |||| ||| | || || |||||| Sbjct 360 GGATTCCTTCCTTGTCTTGGATCTT-AGCCTTGACATTGTCGATCGTATCCGATGATTCA 418 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||| ||||| || || |||| ||||| || ||||||||||| Sbjct 419 ACCTCGAGCGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 468 >seq26661 Length=2801 Score = 102 bits (112), Expect = 5e-17 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| |||||||| || ||||| ||| ||||| |||||||| |||| Sbjct 1857 ACCACCACGAAGACGCAACACCAAGTGAAGAGTTGACTCCTTTTGGATGTTGTAGTCGGC 1798 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || |||| || | ||| |||||||| || ||||| | |||||| || | || Sbjct 1797 TAGAGTTCGACCGTCTTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGAGG 1738 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGAT---TC 33698 | |||||| ||||| ||||| ||||| || | |||||| ||| || Sbjct 1737 GATACCTTCCTTGTCCTGGATTTTTGCTTTCACGTTATCAATGGTGTC---TGAGCTCTC 1681 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || || || || || || || || |||||||||||||| Sbjct 1680 GACCTCGAGGGTAATAGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 1630 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/233 (69%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| || ||||| || ||||| || || || ||||| || |||| Sbjct 2085 ACCACCACGGAGACGCAAGACCAAGTGCAGAGTAGATTCCTTCTGAATGTTATAGTCGGC 2026 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||| || | || || | || || || || || || | ||||||||| || | || Sbjct 2025 CAGTGTACGGCCATCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGG 1966 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | |||||||||||| ||| || |||| || | ||| | |||||| ||| | Sbjct 1965 AATACCTTCTTTGTCCTGAATCTTAGCTTTC-ACGTTGTCGATGGTGTCTGAGCT---CT 1910 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| |||| || || || ||||| || || || || || ||||| |||||| Sbjct 1909 CCACCTCAAGGGTAATAGTCTTACCAGTCAAGGTCTTCACGAAGATTTGCATA 1857 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 33537 TAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTC 33596 || |||||| || || || || ||||| ||||||||||| | | || || | || Sbjct 1158 TAGCACCAAGTGAAGCGTTGATTCCTTTTGGATGTTGTAATCCGCCAAGGTACGGCCATC 1099 Query 33597 GTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656 |||||||| ||||| ||||| || | | ||||||||| | || | |||||| ||||| Sbjct 1098 TTCCAATTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGAGGAATACCTTCCTTGTC 1039 Query 33657 GGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCG 33715 || || || | ||| | ||| | ||||| |||||| || | ||||| | Sbjct 1038 CTGGATCTT-TGCCTTAACGTTGTCGATCGTGTCAGAACTTTCCACCTCGAGGGTGATAG 980 Query 33716 TTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || | ||||| || ||||||||||| Sbjct 979 TCTTTCCGGTGAGAGTTTTCACGAAGATCTGCAT 946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 327633463253760