Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_025414.1
Length=178171
Score E
Sequences producing significant alignments: (Bits) Value
seq249645 187 3e-42
seq26767 161 1e-34
seq244327 104 3e-17
>seq249645
Length=476466
Score = 187 bits (206), Expect = 3e-42
Identities = 300/430 (70%), Gaps = 6/430 (1%)
Strand=Plus/Plus
Query 41178 TACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTTGCGTAG 41237
|||| ||||| || ||| | ||||||||||| || ||||||||||| | |||||
Sbjct 264557 TACCAACGCCAATCATGTCAGGTGTGCGTACGCCATCGCGTCAGTTTAGCTCGTGCGTCT 264616
Query 41238 TGATTGAATCAGGTGATTCCCTGGGTTCTCTGAATGCTGTAACCTCT---GCGATCGTGA 41294
| || |||| |||||| | | | ||| | || || ||| || || |||||
Sbjct 264617 TAATCGAATGTGGTGATAGCTTAGACTCTATCAACGCC---ACCACTAGCGCCATCGTAC 264673
Query 41295 AGTATATTTCACAACGTGCTGGTATCGGTGTTAATGCTGGACACATTCGCGCAATGGGTT 41354
||| | ||||| |||||||||||||| | || || || | || || || | |||
Sbjct 264674 GCTATGTGTCACAGCGTGCTGGTATCGGCATCAACGCAGGTCGTATCCGTGCCCTTGGTA 264733
Query 41355 CTAAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTGATCCCGTTCTGGAAACATATTC 41414
|||||||| ||||||||| ||||| ||| || || || | ||| | |
Sbjct 264734 GCCCTATCCGTGGCGGTGAAGCACAGCATACTGGCTGTATTCCTTTTTATAAATTGTTCC 264793
Query 41415 AGACAGCGGTTAAATCCTGTTCACAAGGTGGCGTTCGTGGTGGTGCTGCAACGTTGTATT 41474
| || || ||||||| ||| |||||||||||||| ||||| |||||||| ||||||| |
Sbjct 264794 AAACGGCCGTTAAATGCTGCTCACAAGGTGGCGTACGTGGCGGTGCTGCGACGTTGTTCT 264853
Query 41475 ATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGTGTTG 41534
| || | |||||||| |||||||| | ||||| || ||||| ||| |||||||
Sbjct 264854 ACCCACTATGGCATTTAGAAGTTGAGTCATTACTGGTACTCAAAAATAACCGCGGTGTTG 264913
Query 41535 AGAATAACCGCATTCGTCACCTGGATTATGGCGTTCAGCTTAACGATTTGATGTATAAGC 41594
| | ||||| | ||||| |||| || ||||| ||| | ||| | |||||| | ||
Sbjct 264914 AAGACAACCGTGTCCGTCATATGGACTACGGCGTACAGTTAAACAAAACGATGTACACGC 264973
Query 41595 GTTTAATCAA 41604
| | |||||
Sbjct 264974 GCCTCATCAA 264983
Score = 93.3 bits (102), Expect = 5e-14
Identities = 118/161 (73%), Gaps = 6/161 (4%)
Strand=Plus/Plus
Query 43469 TATCTGTGTATGCACGCTGTCAACGCTCTGGAAGCGATTCGTTTCTATGTCTCGTTTACC 43528
|||||||| || || ||||||| || ||||| ||||||||||||||||||||| |
Sbjct 268767 TATCTGTGCATCATGGCGGTCAACGTCCTAGAAGCCATTCGTTTCTATGTCTCGTTTGCT 268826
Query 43529 TTTACGTTCAACTTTGCCGAACAGGGCAA---GATGGAAGGTAACGCAAAGATCATGCGT 43585
| |||| ||||| | || |||| |||||||||||| || || |||||
Sbjct 268827 TGCTCGTTTGCGTTTGCTG---AGCGCAAATTGATGGAAGGTAATGCCAAAATCATTAAG 268883
Query 43586 CTGATTGCCCGTGATGAAGCACTTCATCAGAAAGGTACTCA 43626
|| || || ||||||||||| || ||| || |||||| ||
Sbjct 268884 CTCATCGCTCGTGATGAAGCGCTGCATTTGACAGGTACGCA 268924
>seq26767
Length=1149
Score = 161 bits (178), Expect = 1e-34
Identities = 286/417 (69%), Gaps = 0/417 (0%)
Strand=Plus/Minus
Query 41174 TCGTTACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTTGC 41233
|| ||||| || || |||||| |||| || | |||||||| || || ||| | ||
Sbjct 446 TCTTTACCGACACCAATTATGTCTGGAGTTAGAACTCCTACTCGACAATTTAGCTCATGT 387
Query 41234 GTAGTGATTGAATCAGGTGATTCCCTGGGTTCTCTGAATGCTGTAACCTCTGCGATCGTG 41293
|| | ||||||| | |||| || | |||| | || ||| || | | || ||
Sbjct 386 GTTTTAATTGAATGTGATGATAATCTAGATTCTATTAACGCTACTACTAGTTCTATTGTA 327
Query 41294 AAGTATATTTCACAACGTGCTGGTATCGGTGTTAATGCTGGACACATTCGCGCAATGGGT 41353
|| ||| |||| ||||| || || || ||| ||||||||||| | ||||| ||| | |||
Sbjct 326 AAATATGTTTCTCAACGAGCAGGAATTGGTATTAATGCTGGAAAAATTCGTGCAGTAGGT 267
Query 41354 TCTAAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTGATCCCGTTCTGGAAACATATT 41413
| || | ||| |||||| | ||||| || || || || | |||||| ||
Sbjct 266 AGTCCTATTAGAAATGGCGAAGCATTTCATACTGGTTGTATTCCTTTTTATAAACATTTT 207
Query 41414 CAGACAGCGGTTAAATCCTGTTCACAAGGTGGCGTTCGTGGTGGTGCTGCAACGTTGTAT 41473
|| | || || ||||||||||| ||||| || ||| | ||||| || ||||| | | |
Sbjct 206 CAAAGTGCTGTAAAATCCTGTTCTCAAGGAGGAGTTAGAGGTGGAGCGGCAACTATATTT 147
Query 41474 TATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGTGTT 41533
||||| || |||||||| ||| |||||| | | ||| | ||||| || | || ||
Sbjct 146 TATCCAATATGGCATTTTGAAATTGAAAGTTTATTAGTTTTAAAAAATAATAGGGGCATT 87
Query 41534 GAGAATAACCGCATTCGTCACCTGGATTATGGCGTTCAGCTTAACGATTTGATGTAT 41590
|| | || | | |||||| | ||||||| || || |||| | |||||||||
Sbjct 86 GAAGAAAATAGAGTACGTCACGTTGATTATGCAGTACAAATTAATAAATTGATGTAT 30
>seq244327
Length=1302
Score = 104 bits (114), Expect = 3e-17
Identities = 191/280 (68%), Gaps = 0/280 (0%)
Strand=Plus/Minus
Query 42927 TTGCCCGATATGAAGAACAAAAACATCGCGTATTCGAAACTTTGACTGAAAAACAACTAT 42986
||||||||||||| | |||||| || | || |||| || | |||||||||||| |
Sbjct 1149 TTGCCCGATATGATCAGCAAAAATATAATATTTTTGAAAAATTAATTGAAAAACAACTCT 1090
Query 42987 CATTCTTCTGGCGACCGGAAGAAGTGGATCTGTCGATCGACCGTATGCAGTATGCAAAAA 43046
| || || ||| |||| |||||| | ||||| || || | || | | | |||
Sbjct 1089 CTTTTTTTTGGAGACCTGAAGAAATAGATCTCTCTCGAGATAGAATAGATTTTCAAAATT 1030
Query 43047 TGCCGGAACACGAGAAAATCATTTTTGATTCTAACCTGCAATATCAAACCCTGTTAGATA 43106
| || ||||| || ||| |||||| | ||| | |||||||||| | |||||
Sbjct 1029 TACCTGAACATGAAAAACATATTTTTCTTAGTAATTTAAAATATCAAACATTATTAGACT 970
Query 43107 CCATTCAGGGACGTGGCCCTAACCTGGCGTTTCTCCCGATTGCCTCTGATGTTTCAATGG 43166
| ||||| ||| | | |||||| | || ||||| || ||| ||| | | | |
Sbjct 969 CTATTCAAGGAAGAAGTCCTAACATTGCTTTTCTACCAATTATTTCTATTCCGGAATTAG 910
Query 43167 AAACGTGGATCGAAACATGGGCTTTCAGTGAAACAATTCA 43206
|||| ||||| ||||||||| |||| ||||| |||||
Sbjct 909 AAACCTGGATTGAAACATGGTCTTTTTCGGAAACTATTCA 870
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 568115136365280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |