Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_025414.1 Length=178171 Score E Sequences producing significant alignments: (Bits) Value seq249645 187 3e-42 seq26767 161 1e-34 seq244327 104 3e-17 >seq249645 Length=476466 Score = 187 bits (206), Expect = 3e-42 Identities = 300/430 (70%), Gaps = 6/430 (1%) Strand=Plus/Plus Query 41178 TACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTTGCGTAG 41237 |||| ||||| || ||| | ||||||||||| || ||||||||||| | ||||| Sbjct 264557 TACCAACGCCAATCATGTCAGGTGTGCGTACGCCATCGCGTCAGTTTAGCTCGTGCGTCT 264616 Query 41238 TGATTGAATCAGGTGATTCCCTGGGTTCTCTGAATGCTGTAACCTCT---GCGATCGTGA 41294 | || |||| |||||| | | | ||| | || || ||| || || ||||| Sbjct 264617 TAATCGAATGTGGTGATAGCTTAGACTCTATCAACGCC---ACCACTAGCGCCATCGTAC 264673 Query 41295 AGTATATTTCACAACGTGCTGGTATCGGTGTTAATGCTGGACACATTCGCGCAATGGGTT 41354 ||| | ||||| |||||||||||||| | || || || | || || || | ||| Sbjct 264674 GCTATGTGTCACAGCGTGCTGGTATCGGCATCAACGCAGGTCGTATCCGTGCCCTTGGTA 264733 Query 41355 CTAAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTGATCCCGTTCTGGAAACATATTC 41414 |||||||| ||||||||| ||||| ||| || || || | ||| | | Sbjct 264734 GCCCTATCCGTGGCGGTGAAGCACAGCATACTGGCTGTATTCCTTTTTATAAATTGTTCC 264793 Query 41415 AGACAGCGGTTAAATCCTGTTCACAAGGTGGCGTTCGTGGTGGTGCTGCAACGTTGTATT 41474 | || || ||||||| ||| |||||||||||||| ||||| |||||||| ||||||| | Sbjct 264794 AAACGGCCGTTAAATGCTGCTCACAAGGTGGCGTACGTGGCGGTGCTGCGACGTTGTTCT 264853 Query 41475 ATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGTGTTG 41534 | || | |||||||| |||||||| | ||||| || ||||| ||| ||||||| Sbjct 264854 ACCCACTATGGCATTTAGAAGTTGAGTCATTACTGGTACTCAAAAATAACCGCGGTGTTG 264913 Query 41535 AGAATAACCGCATTCGTCACCTGGATTATGGCGTTCAGCTTAACGATTTGATGTATAAGC 41594 | | ||||| | ||||| |||| || ||||| ||| | ||| | |||||| | || Sbjct 264914 AAGACAACCGTGTCCGTCATATGGACTACGGCGTACAGTTAAACAAAACGATGTACACGC 264973 Query 41595 GTTTAATCAA 41604 | | ||||| Sbjct 264974 GCCTCATCAA 264983 Score = 93.3 bits (102), Expect = 5e-14 Identities = 118/161 (73%), Gaps = 6/161 (4%) Strand=Plus/Plus Query 43469 TATCTGTGTATGCACGCTGTCAACGCTCTGGAAGCGATTCGTTTCTATGTCTCGTTTACC 43528 |||||||| || || ||||||| || ||||| ||||||||||||||||||||| | Sbjct 268767 TATCTGTGCATCATGGCGGTCAACGTCCTAGAAGCCATTCGTTTCTATGTCTCGTTTGCT 268826 Query 43529 TTTACGTTCAACTTTGCCGAACAGGGCAA---GATGGAAGGTAACGCAAAGATCATGCGT 43585 | |||| ||||| | || |||| |||||||||||| || || ||||| Sbjct 268827 TGCTCGTTTGCGTTTGCTG---AGCGCAAATTGATGGAAGGTAATGCCAAAATCATTAAG 268883 Query 43586 CTGATTGCCCGTGATGAAGCACTTCATCAGAAAGGTACTCA 43626 || || || ||||||||||| || ||| || |||||| || Sbjct 268884 CTCATCGCTCGTGATGAAGCGCTGCATTTGACAGGTACGCA 268924 >seq26767 Length=1149 Score = 161 bits (178), Expect = 1e-34 Identities = 286/417 (69%), Gaps = 0/417 (0%) Strand=Plus/Minus Query 41174 TCGTTACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTTGC 41233 || ||||| || || |||||| |||| || | |||||||| || || ||| | || Sbjct 446 TCTTTACCGACACCAATTATGTCTGGAGTTAGAACTCCTACTCGACAATTTAGCTCATGT 387 Query 41234 GTAGTGATTGAATCAGGTGATTCCCTGGGTTCTCTGAATGCTGTAACCTCTGCGATCGTG 41293 || | ||||||| | |||| || | |||| | || ||| || | | || || Sbjct 386 GTTTTAATTGAATGTGATGATAATCTAGATTCTATTAACGCTACTACTAGTTCTATTGTA 327 Query 41294 AAGTATATTTCACAACGTGCTGGTATCGGTGTTAATGCTGGACACATTCGCGCAATGGGT 41353 || ||| |||| ||||| || || || ||| ||||||||||| | ||||| ||| | ||| Sbjct 326 AAATATGTTTCTCAACGAGCAGGAATTGGTATTAATGCTGGAAAAATTCGTGCAGTAGGT 267 Query 41354 TCTAAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTGATCCCGTTCTGGAAACATATT 41413 | || | ||| |||||| | ||||| || || || || | |||||| || Sbjct 266 AGTCCTATTAGAAATGGCGAAGCATTTCATACTGGTTGTATTCCTTTTTATAAACATTTT 207 Query 41414 CAGACAGCGGTTAAATCCTGTTCACAAGGTGGCGTTCGTGGTGGTGCTGCAACGTTGTAT 41473 || | || || ||||||||||| ||||| || ||| | ||||| || ||||| | | | Sbjct 206 CAAAGTGCTGTAAAATCCTGTTCTCAAGGAGGAGTTAGAGGTGGAGCGGCAACTATATTT 147 Query 41474 TATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGTGTT 41533 ||||| || |||||||| ||| |||||| | | ||| | ||||| || | || || Sbjct 146 TATCCAATATGGCATTTTGAAATTGAAAGTTTATTAGTTTTAAAAAATAATAGGGGCATT 87 Query 41534 GAGAATAACCGCATTCGTCACCTGGATTATGGCGTTCAGCTTAACGATTTGATGTAT 41590 || | || | | |||||| | ||||||| || || |||| | ||||||||| Sbjct 86 GAAGAAAATAGAGTACGTCACGTTGATTATGCAGTACAAATTAATAAATTGATGTAT 30 >seq244327 Length=1302 Score = 104 bits (114), Expect = 3e-17 Identities = 191/280 (68%), Gaps = 0/280 (0%) Strand=Plus/Minus Query 42927 TTGCCCGATATGAAGAACAAAAACATCGCGTATTCGAAACTTTGACTGAAAAACAACTAT 42986 ||||||||||||| | |||||| || | || |||| || | |||||||||||| | Sbjct 1149 TTGCCCGATATGATCAGCAAAAATATAATATTTTTGAAAAATTAATTGAAAAACAACTCT 1090 Query 42987 CATTCTTCTGGCGACCGGAAGAAGTGGATCTGTCGATCGACCGTATGCAGTATGCAAAAA 43046 | || || ||| |||| |||||| | ||||| || || | || | | | ||| Sbjct 1089 CTTTTTTTTGGAGACCTGAAGAAATAGATCTCTCTCGAGATAGAATAGATTTTCAAAATT 1030 Query 43047 TGCCGGAACACGAGAAAATCATTTTTGATTCTAACCTGCAATATCAAACCCTGTTAGATA 43106 | || ||||| || ||| |||||| | ||| | |||||||||| | ||||| Sbjct 1029 TACCTGAACATGAAAAACATATTTTTCTTAGTAATTTAAAATATCAAACATTATTAGACT 970 Query 43107 CCATTCAGGGACGTGGCCCTAACCTGGCGTTTCTCCCGATTGCCTCTGATGTTTCAATGG 43166 | ||||| ||| | | |||||| | || ||||| || ||| ||| | | | | Sbjct 969 CTATTCAAGGAAGAAGTCCTAACATTGCTTTTCTACCAATTATTTCTATTCCGGAATTAG 910 Query 43167 AAACGTGGATCGAAACATGGGCTTTCAGTGAAACAATTCA 43206 |||| ||||| ||||||||| |||| ||||| ||||| Sbjct 909 AAACCTGGATTGAAACATGGTCTTTTTCGGAAACTATTCA 870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568115136365280