Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_025415.1
Length=32799
Score E
Sequences producing significant alignments: (Bits) Value
seq232480 102 2e-17
seq206357 98.7 2e-16
>seq232480
Length=511
Score = 102 bits (112), Expect = 2e-17
Identities = 169/242 (70%), Gaps = 4/242 (2%)
Strand=Plus/Plus
Query 27355 TTGCCAAGATCCTCAAGCAAAACGGCATTAACATTGGCTCTATCAGATTGTTCGCTTGGT 27414
|||||||| | |||| || |||||| || ||||||| | | | |||||||| |||
Sbjct 1 TTGCCAAGGTAATCAAACAGAACGGCGTTGACATTGGTGCCAAGCGGTTGTTCGCATGGC 60
Query 27415 TACGTGATAACGGTTATTTAATCAAGCGGCAAGGCAGTGACTACAATTCACCAACGCAGT 27474
||||||| | || ||||| ||||| ||| || ||||| || || || || ||
Sbjct 61 TACGTGAGCAAGGATATTTGATCAAACGGATTGGTGCCGACTATAACTCGCCGACACAAC 120
Query 27475 ATTCAATGGAGCGTGGCTGGTTTGAGGTAAAAGAAACAACGGTCAACTACCCAGACGGCC 27534
| ||||||| |||| ||| ||||| ||||| || || ||| || | |||||||
Sbjct 121 GCGCGATGGAGCTAGGCTTGTTCGAGGTCAAAGAGACGGCGATCAGTCACTCGGACGGCC 180
Query 27535 --GCACCCTTGTTAAGAAGACTCCGAAAGTTACTGGAAAAGGCCAGCAATACTTCGTAAA 27592
| | | ||| ||||||| || || || || || ||||||||||| || || | ||
Sbjct 181 ATGTAACA--GTTCAGAAGACCCCAAAGGTGACCGGCAAAGGCCAGCAGTATTTTATCAA 238
Query 27593 CA 27594
||
Sbjct 239 CA 240
Score = 100 bits (110), Expect = 6e-17
Identities = 166/240 (69%), Gaps = 0/240 (0%)
Strand=Plus/Plus
Query 26432 TTGCCAAGATCCTCAAGCAAAACGGTGTTAACATTGGTTCTATTAGATTGTTCACTTGGC 26491
|||||||| | |||| || ||||| ||| |||||||| | | | |||||| | ||||
Sbjct 1 TTGCCAAGGTAATCAAACAGAACGGCGTTGACATTGGTGCCAAGCGGTTGTTCGCATGGC 60
Query 26492 TACGTGATAACTGTTACTTAATCAAGCGGCAAGGAAGTGACTACAATTCGCCAACGCAGT 26551
||||||| | | || || ||||| ||| || ||||| || ||||| || ||
Sbjct 61 TACGTGAGCAAGGATATTTGATCAAACGGATTGGTGCCGACTATAACTCGCCGACACAAC 120
Query 26552 ATTCAATGGAGCGTGGCTGGTTTGAGGTAAAAGAAACAACGGTCAATTATCCAGACGGTC 26611
| ||||||| |||| ||| ||||| ||||| || || ||| | | | ||||| |
Sbjct 121 GCGCGATGGAGCTAGGCTTGTTCGAGGTCAAAGAGACGGCGATCAGTCACTCGGACGGCC 180
Query 26612 GCACACTTGTTAAGAAGACTCCGAAAGTCACTGGAAAAGGTCAGCAATATTTCGTAAACA 26671
| ||| ||||||| || || || || || ||||| ||||| ||||| | ||||
Sbjct 181 ATGTAACAGTTCAGAAGACCCCAAAGGTGACCGGCAAAGGCCAGCAGTATTTTATCAACA 240
>seq206357
Length=299
Score = 98.7 bits (108), Expect = 2e-16
Identities = 184/266 (69%), Gaps = 6/266 (2%)
Strand=Plus/Minus
Query 26191 TTCAAGCGCTGGGTTACAAGCGAAGTTCTTCCAACGATCAGAAAGCATGGAGCATATCTC 26250
|| || || ||||| || |||||||| ||| | ||| | |||||||| || ||| |
Sbjct 263 TTTAACCGTTGGGTAACGCATGAAGTTCTCCCATCAATCCGTAAGCATGGTGCCTATATG 204
Query 26251 ACCGACCAGAA--GATCGAAGAAGTGCTTG-ACAACCCGGACACGATTATCAAGTTAGCA 26307
|| || ||| ||| || |||| | | | || || ||| |||||||| | |||
Sbjct 203 ACG--CCTGAAACGATTGA-GAAGGCCATCTATAATCCAGACTTCATTATCAATCTGGCA 147
Query 26308 ACAAAATTGAAGGAAGAGCGAGCTAAAAGTGCGGCGCTTGCGGCAGATAATGAGGAAATG 26367
|| | | ||||| || | ||| |||| ||||| ||| |||| ||||| || ||||
Sbjct 146 ACGCAGCTAAAGGACGAACAAGCCAAAACAGCGGCACTTACGGCTGATAACGAAACAATG 87
Query 26368 AGACCAAAAGCATTGTTTGCTGATTCAGTTTCTTCTAGTAGCTCAACTATCTCAGTTGGA 26427
| || |||||||||||||| || | || | | ||| | |||| |||| |||||
Sbjct 86 AAGCCTAAAGCATTGTTTGCAGACGCGGTAGCCACAAGTCACACAACCATCTTGGTTGGT 27
Query 26428 GACCTTGCCAAGATCCTCAAGCAAAA 26453
|| ||||||||| | |||| || ||
Sbjct 26 GATCTTGCCAAGGTAATCAAACAGAA 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 104502523052696
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |