Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_025415.1 Length=32799 Score E Sequences producing significant alignments: (Bits) Value seq232480 102 2e-17 seq206357 98.7 2e-16 >seq232480 Length=511 Score = 102 bits (112), Expect = 2e-17 Identities = 169/242 (70%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 27355 TTGCCAAGATCCTCAAGCAAAACGGCATTAACATTGGCTCTATCAGATTGTTCGCTTGGT 27414 |||||||| | |||| || |||||| || ||||||| | | | |||||||| ||| Sbjct 1 TTGCCAAGGTAATCAAACAGAACGGCGTTGACATTGGTGCCAAGCGGTTGTTCGCATGGC 60 Query 27415 TACGTGATAACGGTTATTTAATCAAGCGGCAAGGCAGTGACTACAATTCACCAACGCAGT 27474 ||||||| | || ||||| ||||| ||| || ||||| || || || || || Sbjct 61 TACGTGAGCAAGGATATTTGATCAAACGGATTGGTGCCGACTATAACTCGCCGACACAAC 120 Query 27475 ATTCAATGGAGCGTGGCTGGTTTGAGGTAAAAGAAACAACGGTCAACTACCCAGACGGCC 27534 | ||||||| |||| ||| ||||| ||||| || || ||| || | ||||||| Sbjct 121 GCGCGATGGAGCTAGGCTTGTTCGAGGTCAAAGAGACGGCGATCAGTCACTCGGACGGCC 180 Query 27535 --GCACCCTTGTTAAGAAGACTCCGAAAGTTACTGGAAAAGGCCAGCAATACTTCGTAAA 27592 | | | ||| ||||||| || || || || || ||||||||||| || || | || Sbjct 181 ATGTAACA--GTTCAGAAGACCCCAAAGGTGACCGGCAAAGGCCAGCAGTATTTTATCAA 238 Query 27593 CA 27594 || Sbjct 239 CA 240 Score = 100 bits (110), Expect = 6e-17 Identities = 166/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 26432 TTGCCAAGATCCTCAAGCAAAACGGTGTTAACATTGGTTCTATTAGATTGTTCACTTGGC 26491 |||||||| | |||| || ||||| ||| |||||||| | | | |||||| | |||| Sbjct 1 TTGCCAAGGTAATCAAACAGAACGGCGTTGACATTGGTGCCAAGCGGTTGTTCGCATGGC 60 Query 26492 TACGTGATAACTGTTACTTAATCAAGCGGCAAGGAAGTGACTACAATTCGCCAACGCAGT 26551 ||||||| | | || || ||||| ||| || ||||| || ||||| || || Sbjct 61 TACGTGAGCAAGGATATTTGATCAAACGGATTGGTGCCGACTATAACTCGCCGACACAAC 120 Query 26552 ATTCAATGGAGCGTGGCTGGTTTGAGGTAAAAGAAACAACGGTCAATTATCCAGACGGTC 26611 | ||||||| |||| ||| ||||| ||||| || || ||| | | | ||||| | Sbjct 121 GCGCGATGGAGCTAGGCTTGTTCGAGGTCAAAGAGACGGCGATCAGTCACTCGGACGGCC 180 Query 26612 GCACACTTGTTAAGAAGACTCCGAAAGTCACTGGAAAAGGTCAGCAATATTTCGTAAACA 26671 | ||| ||||||| || || || || || ||||| ||||| ||||| | |||| Sbjct 181 ATGTAACAGTTCAGAAGACCCCAAAGGTGACCGGCAAAGGCCAGCAGTATTTTATCAACA 240 >seq206357 Length=299 Score = 98.7 bits (108), Expect = 2e-16 Identities = 184/266 (69%), Gaps = 6/266 (2%) Strand=Plus/Minus Query 26191 TTCAAGCGCTGGGTTACAAGCGAAGTTCTTCCAACGATCAGAAAGCATGGAGCATATCTC 26250 || || || ||||| || |||||||| ||| | ||| | |||||||| || ||| | Sbjct 263 TTTAACCGTTGGGTAACGCATGAAGTTCTCCCATCAATCCGTAAGCATGGTGCCTATATG 204 Query 26251 ACCGACCAGAA--GATCGAAGAAGTGCTTG-ACAACCCGGACACGATTATCAAGTTAGCA 26307 || || ||| ||| || |||| | | | || || ||| |||||||| | ||| Sbjct 203 ACG--CCTGAAACGATTGA-GAAGGCCATCTATAATCCAGACTTCATTATCAATCTGGCA 147 Query 26308 ACAAAATTGAAGGAAGAGCGAGCTAAAAGTGCGGCGCTTGCGGCAGATAATGAGGAAATG 26367 || | | ||||| || | ||| |||| ||||| ||| |||| ||||| || |||| Sbjct 146 ACGCAGCTAAAGGACGAACAAGCCAAAACAGCGGCACTTACGGCTGATAACGAAACAATG 87 Query 26368 AGACCAAAAGCATTGTTTGCTGATTCAGTTTCTTCTAGTAGCTCAACTATCTCAGTTGGA 26427 | || |||||||||||||| || | || | | ||| | |||| |||| ||||| Sbjct 86 AAGCCTAAAGCATTGTTTGCAGACGCGGTAGCCACAAGTCACACAACCATCTTGGTTGGT 27 Query 26428 GACCTTGCCAAGATCCTCAAGCAAAA 26453 || ||||||||| | |||| || || Sbjct 26 GATCTTGCCAAGGTAATCAAACAGAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104502523052696